Lsi02G021600 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G021600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionStructural maintenance of chromosomes protein
Locationchr02 : 28032058 .. 28035171 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAATGGAAGAAGAAAACATCTGCTGCTACAACTAGCATATCAAAATTGAATCGTCAGATTAATTCTAAGGTTCGTTTCACTAGATTTTGAAATGTGTAGTGAAGTATTGACACTGGCATGTGTAAGACCTATGTGCCCGATATCAAACACATAGACACTCTAGACGTGTATCAAATCCTTGTTAAGCACAATAGTTAATGTGTCGGATTGGCATGATAACACTCAACAAAAGGTCTTGATATTTAAATCGTTGGTTGGCATACAAGAGATTAACCAACCAAGGAATCTAATTGCCAACTAATTCAACAACGAATTCCTAACTTTTGACCAATTAAAAACTGACAACTCAAATTAAAATTACCAAATTATTACTAACACTATTTTGAGGGTGCATTTAAAAGCTTTTTTTTTTTTTTTTGTTGGAATACATGTAAAAGTATTAGTATTAAGGGTGCTCTTTTACACGTATAAGTGCATAATCATACCTAACTCCCTTTTGTACTAAAAGAACAAAACAAAAGAAGACAAAACTCCTCTTTATAAGATATGAAACTGTTGAGAAAAATACAAATCAAATTAAAATTACCAAATTATTACCAACACTATTTTGAGGGTGCATTTAAAAGCATTTTTTCTTTTGCTGGAATACATGTAAAAGTATTAAGTGTGCTCTTTTACATGTGCATAATCATACCTAACTCCCTTTTGTACTAAAAAAAAAAAAGACAAAACTCCTTTTAATAAGATATGAAGCTATTGAGAAAAACGTTAAGTTAGTTTTAGATATTTAACACGATTGCATAAACATAGCTAATTCCCTTTCTATATGTTCTGAAACTGTTTTAAATGTTCTTTTAATATTTTGATATAAGGTATTGCATTATCTAAATTAGGTCATGAGTGATAGTTTCTTCAACCCCTTGATGTATATTGCATTTTCATCACTCACTTCACTTTTCTTTTTTCATATGAAAATATCATAAATTAACAAATCTTTAACGGGTAATCCTTTTCTAAAAACAAATCTTTAACGGGAAAATTGCTGAAACATTTTATATAATAATAATTGTGTCCTTGCTCTCTTATTCAGATTTTTTGTGCTTCTTTGCTCTTAATTCGTTAGATAAGTATATAATTTGAATAAACCATGATGGGTATCCACCATATTTTTCTTCCAGGAGACAAATATTGAACAACTGATCACCCAGAAGCAGGAAATAGTGGAAAAATGTGAATTAGAAAATATAGTCCTCCCCACTATCTCAGACCCCATGGAGACTGAATCCTTGACTCCTGGCCCAGTTTTTGATTTTAGCCAGCTGATTAAATCCTATGAACTGGATAAGAAATCATCTGATAGAGAGAAACTTGAGACAAAGTTTAAACGTGATATAGATGCCCTGGTATCAGAAATTGACAGAACTGCACCAAATTTGAAAGCACTAGATCAATATGAAGCTTTGAAAGAAAAGGAAAGAGTAATATCTGAGGAGTTTGAAGCCGCTAGGAAAGAGGAGAAAGAGGTGGCTGACAAATTCAATTCTATTAAGCAAAAGAGGTGATCTTTTTTATTTGCATCTTTATGTGTCTATTAGTTACATCGAGAAGCATATTCTTAACTCTAGTGTAATATGAAATGTATGTATGAATGTAAAGTTGTCGTTGACTTAGGGGTGTTCAGAAGACTATCACTCTTACTCAAACTAATCCATTATAGGGTTGGGTTGAGTTGATTCACCTAACTAAAATCAACAATTGTGTTGTGTCATCTTTCAACCTAGTCCAGTTCAAGAACACACCTGGATTATTTATGGTCATATTCTTTTGTTCTGTACATGTTAACACCAACCATACAATGTAAGGGCGTCTTTGCCTCACTATTATGTTTATATCTTTCCACTTTATCTATTCTGAGACATCTGAATACTGTTATTATACTTGGATGTCGTACTCCAACAAAACATTGGTTATTGACAATATGGTCCTACCCAAATGACGGGTTATAAGTCATGGAGAAATCTTGATTCATTAAGTTTTCTGATGCTTCAATTGCTGCATTAATTTGCAGTTCGTATTATTGCTAAGTTTGTCTTGACAACTGCAGGTATGAGTTGTTTATGGATGCTTTCAACCACATTTCTGGAAATATCGATAAGATATATAAGCAATTGACAAAAAGTAACACACATCCCTTGGGTGGAACGGCGTATTTGAACTTGGAAAATGAAGATGAACCATTTTTACATGGTATCAAGTATACTGCTATGCCACCAACAAAGCGGTTTCGTGACATGGAACAGTTGTCTGGTGGAGAAAAGACTGTCGCAGCATTAGCATTACTTTTTTCCATTCATAGGTATGATGATATGGATGCTTGATCTTACATATATGAGTTTTCATTGTGAATGATTTGATTGCTTATGGCTGACGAGTTTATTACTCTACTTGATCATGTATTTTCTACTTAACTTGAATCCCTTGCCAATGTCCTCCGGTTGGGCCAATAGGATAAGGTGGTGGTTATTATTAAACTACATCATTGGCTGTCAAGGACCTTCTGTTATATATAGAGTATTTTGGTGCCACTTTCTATATTTCCAGGGAAAGCCAATTAACTTATCTAGAGCCACAAATTACTGTCAACTGATGGATGTTCACATTATTCCCTGTATTTCAGTTTTAGGCCTTCGCCCTTTTTCATATTGGATGAAGTGGATGCTGCCTTAGATAACTTGAATGTTGCAAAGGTCGCTGGTTTCATTCGTTCGAAGTCATGTGAAGGTGCCAGGATGATTCAGGACGTGGATGGAAGCAGTGGTTTTCAAAGTATTGTTATATCACTGAAGGATAGCTTTTATGACAAAGCCGAAGCTTTAGTAGGGGTATACCGGGATTGTGAAAGAAGGTAACCTCATAAAAAATATTTCATGCATAAATGTATATGAATGATTGAATATGCAAGGCCATCATTCTGTTACATTTATTGTCTAGCCTAAATATCTTGTTTCCTGGTAGGATGGCCAAACTGTCTTAACAAATAATGCACTTGTGTTTCACAGCTGCTCGAGAACGTTGACATTCGACCTTACCAAATATCGGGAATCGTAG

mRNA sequence

ATGCAGGAATGGAAGAAGAAAACATCTGCTGCTACAACTAGCATATCAAAATTGAATCGTCAGATTAATTCTAAGGAGACAAATATTGAACAACTGATCACCCAGAAGCAGGAAATAGTGGAAAAATGTGAATTAGAAAATATAGTCCTCCCCACTATCTCAGACCCCATGGAGACTGAATCCTTGACTCCTGGCCCAGTTTTTGATTTTAGCCAGCTGATTAAATCCTATGAACTGGATAAGAAATCATCTGATAGAGAGAAACTTGAGACAAAGTTTAAACGTGATATAGATGCCCTGGTATCAGAAATTGACAGAACTGCACCAAATTTGAAAGCACTAGATCAATATGAAGCTTTGAAAGAAAAGGAAAGAGTAATATCTGAGGAGTTTGAAGCCGCTAGGAAAGAGGAGAAAGAGGTGGCTGACAAATTCAATTCTATTAAGCAAAAGAGGTATGAGTTGTTTATGGATGCTTTCAACCACATTTCTGGAAATATCGATAAGATATATAAGCAATTGACAAAAAGTAACACACATCCCTTGGGTGGAACGGCGTATTTGAACTTGGAAAATGAAGATGAACCATTTTTACATGGTATCAAGTATACTGCTATGCCACCAACAAAGCGGTTTCGTGACATGGAACAGTTGTCTGGTGGAGAAAAGACTGTCGCAGCATTAGCATTACTTTTTTCCATTCATAGTTTTAGGCCTTCGCCCTTTTTCATATTGGATGAAGTGGATGCTGCCTTAGATAACTTGAATGTTGCAAAGGTCGCTGGTTTCATTCGTTCGAAGTCATGTGAAGGTGCCAGGATGATTCAGGACGTGGATGGAAGCAGTGGTTTTCAAAGTATTGTTATATCACTGAAGGATAGCTTTTATGACAAAGCCGAAGCTTTAGTAGGGGATGGCCAAACTGTCTTAACAAATAATGCACTTGTGTTTCACAGCTGCTCGAGAACGTTGACATTCGACCTTACCAAATATCGGGAATCGTAG

Coding sequence (CDS)

ATGCAGGAATGGAAGAAGAAAACATCTGCTGCTACAACTAGCATATCAAAATTGAATCGTCAGATTAATTCTAAGGAGACAAATATTGAACAACTGATCACCCAGAAGCAGGAAATAGTGGAAAAATGTGAATTAGAAAATATAGTCCTCCCCACTATCTCAGACCCCATGGAGACTGAATCCTTGACTCCTGGCCCAGTTTTTGATTTTAGCCAGCTGATTAAATCCTATGAACTGGATAAGAAATCATCTGATAGAGAGAAACTTGAGACAAAGTTTAAACGTGATATAGATGCCCTGGTATCAGAAATTGACAGAACTGCACCAAATTTGAAAGCACTAGATCAATATGAAGCTTTGAAAGAAAAGGAAAGAGTAATATCTGAGGAGTTTGAAGCCGCTAGGAAAGAGGAGAAAGAGGTGGCTGACAAATTCAATTCTATTAAGCAAAAGAGGTATGAGTTGTTTATGGATGCTTTCAACCACATTTCTGGAAATATCGATAAGATATATAAGCAATTGACAAAAAGTAACACACATCCCTTGGGTGGAACGGCGTATTTGAACTTGGAAAATGAAGATGAACCATTTTTACATGGTATCAAGTATACTGCTATGCCACCAACAAAGCGGTTTCGTGACATGGAACAGTTGTCTGGTGGAGAAAAGACTGTCGCAGCATTAGCATTACTTTTTTCCATTCATAGTTTTAGGCCTTCGCCCTTTTTCATATTGGATGAAGTGGATGCTGCCTTAGATAACTTGAATGTTGCAAAGGTCGCTGGTTTCATTCGTTCGAAGTCATGTGAAGGTGCCAGGATGATTCAGGACGTGGATGGAAGCAGTGGTTTTCAAAGTATTGTTATATCACTGAAGGATAGCTTTTATGACAAAGCCGAAGCTTTAGTAGGGGATGGCCAAACTGTCTTAACAAATAATGCACTTGTGTTTCACAGCTGCTCGAGAACGTTGACATTCGACCTTACCAAATATCGGGAATCGTAG

Protein sequence

MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETESLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAEALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES
Homology
[Close]
BLAST of Lsi02G021600 vs. Swiss-Prot
Match: SMC1_ARATH (Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana GN=SMC1 PE=2 SV=2)

HSP 1 Score: 466.5 bits (1199), Expect = 2.5e-130
Identity = 242/332 (72.89%), Postives = 284/332 (85.54%), Query Frame = 1 

Query: 3    EWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETESL 62
            +WKK+ S ATTSI+KLNRQI+SKET IEQLI+QKQEI EKCELE+I LP +SD ME +  
Sbjct: 895  DWKKQASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCELEHITLPVLSDAMEEDD- 954

Query: 63   TPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEALKE 122
            + GP FDFS+L ++Y  +++ S REK+E +F++ I++  SEI+RTAPNL+ALDQYEA++E
Sbjct: 955  SDGPQFDFSELGRAYLQERRPSAREKVEAEFRQKIESKTSEIERTAPNLRALDQYEAIQE 1014

Query: 123  KERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPL 182
            KE+ +S+EFEAARKEEK+VAD FN++KQKRYELFM+AFNHI+ NIDKIYKQLTKSNTHPL
Sbjct: 1015 KEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPL 1074

Query: 183  GGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPF 242
            GGTAYLNLENED+PFLHGIKYT MPPTKRFRDMEQLSGGEKTVAALALLFSIHS+RPSPF
Sbjct: 1075 GGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPF 1134

Query: 243  FILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAEAL 302
            FILDEVDAALDNLNVAKVA FIRSKSC+ AR  QD +  +GFQSIVISLKDSFYDKAEAL
Sbjct: 1135 FILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLKDSFYDKAEAL 1194

Query: 303  VGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            VG  +           SCS T++FDL  Y+ES
Sbjct: 1195 VGVYRD-------TERSCSSTMSFDLRNYQES 1218

[Close]
BLAST of Lsi02G021600 vs. Swiss-Prot
Match: SMC1_SCHPO (Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm1 PE=1 SV=2)

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-63
Identity = 146/340 (42.94%), Postives = 212/340 (62.35%), Query Frame = 1 

Query: 13   TSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPT---------ISDPMETESLT 72
            + ++KL+  I   E+ I++ +++   I+ KC+LE+I +P          I D   +  +T
Sbjct: 908  SELTKLSGNITLLESEIDRYVSEWHAILRKCKLEDIDVPLREGSLTSIPIDDVSNSGDIT 967

Query: 73   PG-----PVFDFSQL---IKSYELDK--KSSDREKLETKFKRDIDALVSEIDRTAPNLKA 132
             G     PV +F +    +   ELD+  ++   E + +  +  +     E+D+ +PNL+A
Sbjct: 968  MGEEPSEPVINFEKFGVEVDYDELDEELRNDGSESMASVLQEKLREYSEELDQMSPNLRA 1027

Query: 133  LDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQ 192
            +++ E ++ +   + EEF AARK  K   ++FN++KQKR + F  AF+HIS  ID IYK+
Sbjct: 1028 IERLETVETRLAKLDEEFAAARKAAKNAKERFNAVKQKRLQKFQAAFSHISEQIDPIYKE 1087

Query: 193  LTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFS 252
            LTKS   PLGGTAYL L++ DEP+L GIK+ AMPP KRFRDM+QLSGGEKT+AALALLF+
Sbjct: 1088 LTKSPAFPLGGTAYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFA 1147

Query: 253  IHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKD 312
            IHS++PSPFF+LDE+DAALD  NV K+A +IR  +            SSGFQ +VISLK+
Sbjct: 1148 IHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHA------------SSGFQFVVISLKN 1207

Query: 313  SFYDKAEALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRE 334
              + K+EALVG  +    N+       SRTL+ +L  Y E
Sbjct: 1208 QLFSKSEALVGIYRDQQENS-------SRTLSINLEGYVE 1228

[Close]
BLAST of Lsi02G021600 vs. Swiss-Prot
Match: SMC1A_XENLA (Structural maintenance of chromosomes protein 1A OS=Xenopus laevis GN=smc1a PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-54
Identity = 134/362 (37.02%), Postives = 213/362 (58.84%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLP----TISDP 60
            M++ +KK  +A   ++ L +++ + ET +EQ  + +  +++ C++ +I LP    T+ D 
Sbjct: 891  MEDIRKKLGSANKEVTHLQKEVTAIETKLEQKRSDRHNLLQACKMSDIKLPLSKGTMDDI 950

Query: 61   METESLTPGP-----------VFDFSQLIKSYELDKKSSDREKL-ETKFKRDIDALVSEI 120
             + E  + G            V+    LI+    D     ++ + +   K+++ AL  +I
Sbjct: 951  SQEEGSSQGEESASSSQRSSTVYAKEALIEIDYSDLSEDLKDAVADDDIKQEMSALHQKI 1010

Query: 121  DR--------TAPNLKALDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELF 180
            +         +APN+KA+++ E++++K +  S+EFEAARK  K+    F   K++R++ F
Sbjct: 1011 NEQQSILQRISAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQTKKERFDRF 1070

Query: 181  MDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDME 240
               F  ++ NID+IYK L+++++      A+L  EN +EP+L GI Y  + P KRFR M+
Sbjct: 1071 NACFESVATNIDEIYKALSRNSS----AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMD 1130

Query: 241  QLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQ 300
             LSGGEKTVAALALLF+IHS++PSPFF+LDE+DAALDN N+ KVA +I+ +S        
Sbjct: 1131 NLSGGEKTVAALALLFAIHSYKPSPFFVLDEIDAALDNTNIGKVANYIKEQS-------- 1190

Query: 301  DVDGSSGFQSIVISLKDSFYDKAEALVG----DGQTVLTNNALVFHSCSRTLTFDLTKYR 335
                 S FQ+IVISLK+ FY KAE+L+G     G  V+          S+ LTFDLTKY 
Sbjct: 1191 ----MSNFQAIVISLKEEFYTKAESLIGVYPEQGDCVI----------SKVLTFDLTKYP 1226

[Close]
BLAST of Lsi02G021600 vs. Swiss-Prot
Match: SMC1A_HUMAN (Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-54
Identity = 135/362 (37.29%), Postives = 214/362 (59.12%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLP----TISDP 60
            M+E +KK   A   ++ L +++ + ET +EQ  + +  +++ C++++I LP    T+ D 
Sbjct: 891  MEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDI 950

Query: 61   METESLTPGP-VFDFSQLIKSY-------ELDKKSSDRE----KLETKFKRDIDALVSEI 120
             + E  + G      SQ I S        E+D      +    + E + K++++ L  ++
Sbjct: 951  SQEEGSSQGEDSVSGSQRISSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKL 1010

Query: 121  DR--------TAPNLKALDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELF 180
            +          APN+KA+++ E++++K +  S+EFEAARK  K+    F  IK++R++ F
Sbjct: 1011 NEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRF 1070

Query: 181  MDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDME 240
               F  ++ NID+IYK L+++++      A+L  EN +EP+L GI Y  + P KRFR M+
Sbjct: 1071 NACFESVATNIDEIYKALSRNSS----AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMD 1130

Query: 241  QLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQ 300
             LSGGEKTVAALALLF+IHS++P+PFF+LDE+DAALDN N+ KVA +I+ +S        
Sbjct: 1131 NLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQS-------- 1190

Query: 301  DVDGSSGFQSIVISLKDSFYDKAEALVG----DGQTVLTNNALVFHSCSRTLTFDLTKYR 335
                +  FQ+IVISLK+ FY KAE+L+G     G  V+          S+ LTFDLTKY 
Sbjct: 1191 ----TCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVI----------SKVLTFDLTKYP 1226

[Close]
BLAST of Lsi02G021600 vs. Swiss-Prot
Match: SMC1A_MOUSE (Structural maintenance of chromosomes protein 1A OS=Mus musculus GN=Smc1a PE=1 SV=4)

HSP 1 Score: 212.6 bits (540), Expect = 6.5e-54
Identity = 132/362 (36.46%), Postives = 214/362 (59.12%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLP----TISDP 60
            M+E +KK   A   ++ L +++ + ET +EQ  + +  +++ C++++I LP    T+ D 
Sbjct: 891  MEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDI 950

Query: 61   METESLTPGP-----------VFDFSQLIKSYELDKKSSDRE-KLETKFKRDIDALVSEI 120
             + E  + G            ++    LI+    D     ++ + E + K++++ L  ++
Sbjct: 951  SQEEGSSQGEESVSGSQRTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKL 1010

Query: 121  DR--------TAPNLKALDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELF 180
            +          APN+KA+++ E++++K +  S+EFEAARK  K+    F  IK++R++ F
Sbjct: 1011 NEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRF 1070

Query: 181  MDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDME 240
               F  ++ NID+IYK L+++++      A+L  EN +EP+L GI Y  + P KRFR M+
Sbjct: 1071 NACFESVATNIDEIYKALSRNSS----AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMD 1130

Query: 241  QLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQ 300
             LSGGEKTVAALALLF+IHS++P+PFF+LDE+DAALDN N+ KVA +I+ +S        
Sbjct: 1131 NLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQS-------- 1190

Query: 301  DVDGSSGFQSIVISLKDSFYDKAEALVG----DGQTVLTNNALVFHSCSRTLTFDLTKYR 335
                +  FQ+IVISLK+ FY KAE+L+G     G  V+          S+ LTFDLTKY 
Sbjct: 1191 ----TCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVI----------SKVLTFDLTKYP 1226

[Close]
BLAST of Lsi02G021600 vs. TrEMBL
Match: A0A0A0KA44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372270 PE=4 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 1.6e-163
Identity = 306/334 (91.62%), Postives = 317/334 (94.91%), Query Frame = 1 

Query: 1   MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
           MQEWKKKTSAATTSISKLNRQINSKE+NIEQLITQKQEIVEKCELENI LPTISDPME E
Sbjct: 294 MQEWKKKTSAATTSISKLNRQINSKESNIEQLITQKQEIVEKCELENIALPTISDPMEIE 353

Query: 61  SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
           SLTPGPVFDF QLIKSYEL+KKSSDR+KLETKFKR+IDALVS+IDRTAPNLKALDQYEAL
Sbjct: 354 SLTPGPVFDFGQLIKSYELEKKSSDRDKLETKFKREIDALVSDIDRTAPNLKALDQYEAL 413

Query: 121 KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
           KEKERVISEEFEAARK+EKEVADKFNSIKQKRYELFMDAFNHISGNID+IYKQLTKS+TH
Sbjct: 414 KEKERVISEEFEAARKQEKEVADKFNSIKQKRYELFMDAFNHISGNIDRIYKQLTKSSTH 473

Query: 181 PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
           PLGGT+YLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 474 PLGGTSYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 533

Query: 241 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
           PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARM QD+DGSSGFQSIVISLKDSFYDKAE
Sbjct: 534 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMSQDLDGSSGFQSIVISLKDSFYDKAE 593

Query: 301 ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
           ALVG  +           SCSRTLTFDLTKYRES
Sbjct: 594 ALVGVYRD-------CERSCSRTLTFDLTKYRES 620

[Close]
BLAST of Lsi02G021600 vs. TrEMBL
Match: A0A0K1NZK3_CUCSA (Structural maintenance of chromosomes protein 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 2.3e-146
Identity = 271/285 (95.09%), Postives = 281/285 (98.60%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            MQEWKKKTSAATTSISKLNRQINSKE+NIEQLITQKQEIVEKCELENI LPTISDPME E
Sbjct: 783  MQEWKKKTSAATTSISKLNRQINSKESNIEQLITQKQEIVEKCELENIALPTISDPMEIE 842

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            SLTPGPVFDF QLIKSYEL+KKSSDR+KLETKFKR+IDALVS+IDRTAPNLKALDQYEAL
Sbjct: 843  SLTPGPVFDFGQLIKSYELEKKSSDRDKLETKFKREIDALVSDIDRTAPNLKALDQYEAL 902

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKERVISEEFEAARK+EKEVADKFNSIKQKRYELFMDAFNHISGNID+IYKQLTKS+TH
Sbjct: 903  KEKERVISEEFEAARKQEKEVADKFNSIKQKRYELFMDAFNHISGNIDRIYKQLTKSSTH 962

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGT+YLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 963  PLGGTSYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 1022

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQ 286
            PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARM QD+DGSSGFQ
Sbjct: 1023 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMSQDLDGSSGFQ 1067

[Close]
BLAST of Lsi02G021600 vs. TrEMBL
Match: A0A059D3D3_EUCGR (Structural maintenance of chromosomes protein OS=Eucalyptus grandis GN=EUGRSUZ_B01550 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 6.8e-143
Identity = 271/334 (81.14%), Postives = 299/334 (89.52%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            MQEWKK+ S ATT++SKLNRQINSKE+ IEQLI++KQEI+E CELE+I LPTI+DPMETE
Sbjct: 892  MQEWKKRASNATTNLSKLNRQINSKESQIEQLISRKQEILENCELEHISLPTIADPMETE 951

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            SLT GPVFDFSQL +S   DK+SSDREK E +FK+ ID LVSEI+RTAPNL+ALDQYEAL
Sbjct: 952  SLTEGPVFDFSQLNRSLLQDKRSSDREKHEIEFKQKIDGLVSEIERTAPNLRALDQYEAL 1011

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKERV +EEFEAARKEEKEVADK+N++KQKR ELFM+AFNHIS  IDKIYKQLTKS TH
Sbjct: 1012 KEKERVATEEFEAARKEEKEVADKYNAVKQKRNELFMEAFNHISSIIDKIYKQLTKSTTH 1071

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGT+YLNLENED+PFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHS+RPS
Sbjct: 1072 PLGGTSYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPS 1131

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAG+IRSKSCEG+R+ QD D   GFQSIVISLKDSFYDKAE
Sbjct: 1132 PFFILDEVDAALDNLNVAKVAGYIRSKSCEGSRLNQDADAGCGFQSIVISLKDSFYDKAE 1191

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG    V  ++     SCSRTLTFDLTKYRES
Sbjct: 1192 ALVG----VYRDSE---RSCSRTLTFDLTKYRES 1218

[Close]
BLAST of Lsi02G021600 vs. TrEMBL
Match: M5W1L1_PRUPE (Structural maintenance of chromosomes protein OS=Prunus persica GN=PRUPE_ppa000396mg PE=3 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 7.6e-142
Identity = 271/334 (81.14%), Postives = 292/334 (87.43%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            +QEW K+ S ATTS+SKLNRQINSKE  IEQL+++KQEIVEKCELE I LP ISDPMETE
Sbjct: 883  IQEWNKRGSTATTSVSKLNRQINSKEAQIEQLMSRKQEIVEKCELEQISLPIISDPMETE 942

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            S T GPVFDFSQL +S   D++ S+REKLE +FK+ +DAL SEI+RTAPN+KALDQYEAL
Sbjct: 943  SSTMGPVFDFSQLNRSQLQDRRPSEREKLEVEFKQKMDALTSEIERTAPNMKALDQYEAL 1002

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKER ++EEFE ARKEEKE AD FNS+KQKRYELFMDAFNHIS NIDKIYKQLTKSNTH
Sbjct: 1003 KEKERGVTEEFEVARKEEKEKADLFNSVKQKRYELFMDAFNHISSNIDKIYKQLTKSNTH 1062

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGTAYLNLENED+PFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 1063 PLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 1122

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAGFIRSKS EGAR  QD DG SGFQSIVISLKDSFYDKA+
Sbjct: 1123 PFFILDEVDAALDNLNVAKVAGFIRSKSREGARENQDDDGGSGFQSIVISLKDSFYDKAD 1182

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG  +           SCS TLTFDLTKYRES
Sbjct: 1183 ALVGVYRD-------CERSCSETLTFDLTKYRES 1209

[Close]
BLAST of Lsi02G021600 vs. TrEMBL
Match: B9T1A8_RICCO (Structural maintenance of chromosomes protein OS=Ricinus communis GN=RCOM_0499140 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 2.9e-141
Identity = 265/334 (79.34%), Postives = 298/334 (89.22%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            M EW+K+ SAATTSISKLNRQINSKE  IEQL+++KQ+IVEKCELE+I LPTISDPME +
Sbjct: 894  MLEWRKQGSAATTSISKLNRQINSKEGQIEQLLSRKQDIVEKCELEHINLPTISDPMEVD 953

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            S+ PGP FDFS+L +S   D++ SDREKLE  FK+ +DA++SEI++TAPNLKALDQYEAL
Sbjct: 954  SMIPGPFFDFSELNRSLLQDRRPSDREKLEVDFKQKMDAIMSEIEKTAPNLKALDQYEAL 1013

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            +EKERV++EEFEAARKEEK VAD +NS+KQ+RYELFM+AFNHIS NIDKIYKQLTKSNTH
Sbjct: 1014 QEKERVVTEEFEAARKEEKRVADAYNSVKQRRYELFMEAFNHISNNIDKIYKQLTKSNTH 1073

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGTAYLNL+NED+PFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHS+RPS
Sbjct: 1074 PLGGTAYLNLDNEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPS 1133

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAGFIRSKSCEG R  Q+ DG SGFQSIVISLKDSFYDKAE
Sbjct: 1134 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGVRSNQNADGGSGFQSIVISLKDSFYDKAE 1193

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG    V  ++     SCSRTLTFDLT YR+S
Sbjct: 1194 ALVG----VYRDSE---RSCSRTLTFDLTGYRQS 1220

[Close]
BLAST of Lsi02G021600 vs. TAIR10
Match: AT3G54670.3 (AT3G54670.3 Structural maintenance of chromosomes (SMC) family protein)

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-131
Identity = 242/332 (72.89%), Postives = 284/332 (85.54%), Query Frame = 1 

Query: 3    EWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETESL 62
            +WKK+ S ATTSI+KLNRQI+SKET IEQLI+QKQEI EKCELE+I LP +SD ME +  
Sbjct: 916  DWKKQASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCELEHITLPVLSDAMEEDD- 975

Query: 63   TPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEALKE 122
            + GP FDFS+L ++Y  +++ S REK+E +F++ I++  SEI+RTAPNL+ALDQYEA++E
Sbjct: 976  SDGPQFDFSELGRAYLQERRPSAREKVEAEFRQKIESKTSEIERTAPNLRALDQYEAIQE 1035

Query: 123  KERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPL 182
            KE+ +S+EFEAARKEEK+VAD FN++KQKRYELFM+AFNHI+ NIDKIYKQLTKSNTHPL
Sbjct: 1036 KEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPL 1095

Query: 183  GGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPF 242
            GGTAYLNLENED+PFLHGIKYT MPPTKRFRDMEQLSGGEKTVAALALLFSIHS+RPSPF
Sbjct: 1096 GGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPF 1155

Query: 243  FILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAEAL 302
            FILDEVDAALDNLNVAKVA FIRSKSC+ AR  QD +  +GFQSIVISLKDSFYDKAEAL
Sbjct: 1156 FILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLKDSFYDKAEAL 1215

Query: 303  VGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            VG  +           SCS T++FDL  Y+ES
Sbjct: 1216 VGVYRD-------TERSCSSTMSFDLRNYQES 1239

[Close]
BLAST of Lsi02G021600 vs. TAIR10
Match: AT5G48600.2 (AT5G48600.2 structural maintenance of chromosome 3)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 69/229 (30.13%), Postives = 130/229 (56.77%), Query Frame = 1 

Query: 100  LVSEIDRTAPNLKALDQYEALKEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDA 159
            L +++    PNL ++ +Y +  E      +E  +  +E  +   +++ ++++R + FM  
Sbjct: 1033 LEAQLKELNPNLDSIAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAG 1092

Query: 160  FNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLS 219
            FN IS  + ++Y+ +T      LGG A L L +  +PF  G+ ++  PP K ++++  LS
Sbjct: 1093 FNTISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLS 1152

Query: 220  GGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVD 279
            GGEKT+++LAL+F++H ++P+P +++DE+DAALD  NV+ V  +++             D
Sbjct: 1153 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVK-------------D 1212

Query: 280  GSSGFQSIVISLKDSFYDKAEALVGDGQT-----VLTNNALVFHSCSRT 324
             +   Q I+ISL+++ ++ A+ LVG  +T      +T N   F  C +T
Sbjct: 1213 RTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAVCQKT 1242

[Close]
BLAST of Lsi02G021600 vs. TAIR10
Match: AT3G47460.1 (AT3G47460.1 Structural maintenance of chromosomes (SMC) family protein)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-12
Identity = 60/226 (26.55%), Postives = 105/226 (46.46%), Query Frame = 1 

Query: 78   ELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEALKEKERVISEEFEAARKE 137
            EL++  +D+  LE +  + + A+           KA D+Y AL  K+ +I    E  + +
Sbjct: 963  ELERLQTDQSSLEKRVNKKVTAMFE---------KAEDEYNALMTKKNII----ETDKSK 1022

Query: 138  EKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPL-GGTAYLNLENEDEP 197
             K+V ++ +  K++  ++     N   G+I       T S   P  GGT           
Sbjct: 1023 IKKVIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMSKLEPPEGGT----------- 1082

Query: 198  FLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLN 257
            FL G++          + + +LSGG++++ AL+L+ ++  F+P+P +ILDEVDAALD  +
Sbjct: 1083 FLDGLEVRVAFGDVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSH 1142

Query: 258  VAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAEAL 303
               +   I+S                  Q IV+SLK+  +  A+ L
Sbjct: 1143 TQNIGRMIKSHFPHS-------------QFIVVSLKEGMFSNADVL 1151

[Close]
BLAST of Lsi02G021600 vs. TAIR10
Match: AT5G62410.1 (AT5G62410.1 structural maintenance of chromosomes 2)

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-12
Identity = 60/241 (24.90%), Postives = 106/241 (43.98%), Query Frame = 1 

Query: 65   GPVFDFSQL---IKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEALK 124
            G  +DF      +   +L+K  SD+  LE +  + + A+           KA D+Y AL 
Sbjct: 950  GTDYDFESCDPYVAREKLEKLQSDQSGLEKRVNKKVMAMFE---------KAEDEYNALI 1009

Query: 125  EKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHP 184
             K+  I  +       + ++      + +K+ E     +  ++ +   I+  L       
Sbjct: 1010 SKKNTIEND-------KSKITKVIEELDEKKKETLKVTWVKVNQDFGSIFSTL------- 1069

Query: 185  LGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSP 244
            L GT       ED  FL G++          + + +LSGG++++ AL+L+ ++  F+P+P
Sbjct: 1070 LPGTMAKLEPPEDGNFLDGLEVRVAFGKVWKQSLSELSGGQRSLLALSLILALLLFKPAP 1129

Query: 245  FFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAEA 303
             +ILDEVDAALD  +   +   IR+                  Q IV+SLK+  ++ A  
Sbjct: 1130 LYILDEVDAALDLSHTQNIGRMIRAHFPHS-------------QFIVVSLKEGMFNNANV 1154

[Close]
BLAST of Lsi02G021600 vs. TAIR10
Match: AT2G27170.1 (AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-09
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 215  MEQLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIR 266
            M+QLSGG+KTV ALAL+F+I    P+PF++ DE+DAALD      V   IR
Sbjct: 1096 MKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIR 1146

[Close]
BLAST of Lsi02G021600 vs. NCBI nr
Match: gi|659092814|ref|XP_008447232.1| (PREDICTED: structural maintenance of chromosomes protein 1 [Cucumis melo])

HSP 1 Score: 591.7 bits (1524), Expect = 8.3e-166
Identity = 313/334 (93.71%), Postives = 317/334 (94.91%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPME E
Sbjct: 893  MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMEIE 952

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            SLTPGPVFDFSQLIKSYELDKKSSDR+KLETKFKRDIDALVSEIDRTAPNLKALDQYEAL
Sbjct: 953  SLTPGPVFDFSQLIKSYELDKKSSDRDKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 1012

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKERVISEEFEAARK+EKEVADKFNSIKQKRYELFMDAFNHISGNID+IYKQLTKS TH
Sbjct: 1013 KEKERVISEEFEAARKQEKEVADKFNSIKQKRYELFMDAFNHISGNIDRIYKQLTKSITH 1072

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 1073 PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 1132

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARM QD DGSSGFQSIVISLKDSFYDKAE
Sbjct: 1133 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMSQDADGSSGFQSIVISLKDSFYDKAE 1192

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG  +           SCSRTLTFDLTKYRES
Sbjct: 1193 ALVGVYRD-------CERSCSRTLTFDLTKYRES 1219

[Close]
BLAST of Lsi02G021600 vs. NCBI nr
Match: gi|778727174|ref|XP_011659222.1| (PREDICTED: structural maintenance of chromosomes protein 1 [Cucumis sativus])

HSP 1 Score: 583.6 bits (1503), Expect = 2.2e-163
Identity = 306/334 (91.62%), Postives = 317/334 (94.91%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            MQEWKKKTSAATTSISKLNRQINSKE+NIEQLITQKQEIVEKCELENI LPTISDPME E
Sbjct: 893  MQEWKKKTSAATTSISKLNRQINSKESNIEQLITQKQEIVEKCELENIALPTISDPMEIE 952

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            SLTPGPVFDF QLIKSYEL+KKSSDR+KLETKFKR+IDALVS+IDRTAPNLKALDQYEAL
Sbjct: 953  SLTPGPVFDFGQLIKSYELEKKSSDRDKLETKFKREIDALVSDIDRTAPNLKALDQYEAL 1012

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKERVISEEFEAARK+EKEVADKFNSIKQKRYELFMDAFNHISGNID+IYKQLTKS+TH
Sbjct: 1013 KEKERVISEEFEAARKQEKEVADKFNSIKQKRYELFMDAFNHISGNIDRIYKQLTKSSTH 1072

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGT+YLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 1073 PLGGTSYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 1132

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARM QD+DGSSGFQSIVISLKDSFYDKAE
Sbjct: 1133 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMSQDLDGSSGFQSIVISLKDSFYDKAE 1192

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG  +           SCSRTLTFDLTKYRES
Sbjct: 1193 ALVGVYRD-------CERSCSRTLTFDLTKYRES 1219

[Close]
BLAST of Lsi02G021600 vs. NCBI nr
Match: gi|700189448|gb|KGN44681.1| (hypothetical protein Csa_7G372270 [Cucumis sativus])

HSP 1 Score: 583.6 bits (1503), Expect = 2.2e-163
Identity = 306/334 (91.62%), Postives = 317/334 (94.91%), Query Frame = 1 

Query: 1   MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
           MQEWKKKTSAATTSISKLNRQINSKE+NIEQLITQKQEIVEKCELENI LPTISDPME E
Sbjct: 294 MQEWKKKTSAATTSISKLNRQINSKESNIEQLITQKQEIVEKCELENIALPTISDPMEIE 353

Query: 61  SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
           SLTPGPVFDF QLIKSYEL+KKSSDR+KLETKFKR+IDALVS+IDRTAPNLKALDQYEAL
Sbjct: 354 SLTPGPVFDFGQLIKSYELEKKSSDRDKLETKFKREIDALVSDIDRTAPNLKALDQYEAL 413

Query: 121 KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
           KEKERVISEEFEAARK+EKEVADKFNSIKQKRYELFMDAFNHISGNID+IYKQLTKS+TH
Sbjct: 414 KEKERVISEEFEAARKQEKEVADKFNSIKQKRYELFMDAFNHISGNIDRIYKQLTKSSTH 473

Query: 181 PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
           PLGGT+YLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS
Sbjct: 474 PLGGTSYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 533

Query: 241 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
           PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARM QD+DGSSGFQSIVISLKDSFYDKAE
Sbjct: 534 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMSQDLDGSSGFQSIVISLKDSFYDKAE 593

Query: 301 ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
           ALVG  +           SCSRTLTFDLTKYRES
Sbjct: 594 ALVGVYRD-------CERSCSRTLTFDLTKYRES 620

[Close]
BLAST of Lsi02G021600 vs. NCBI nr
Match: gi|1009147212|ref|XP_015891293.1| (PREDICTED: structural maintenance of chromosomes protein 1 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 528.9 bits (1361), Expect = 6.6e-147
Identity = 275/334 (82.34%), Postives = 302/334 (90.42%), Query Frame = 1 

Query: 1   MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
           MQ+WKK+ S ATTSISKLNRQINSKET IEQL+++KQEI+EKCELE I LPTISDPMET+
Sbjct: 631 MQDWKKQASTATTSISKLNRQINSKETQIEQLMSRKQEIIEKCELEQISLPTISDPMETD 690

Query: 61  SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
           S TPGPVFDFSQL ++Y  DK+ SDREKLE +FK+ +DAL+SEI+RTAPNLKALDQYEAL
Sbjct: 691 SSTPGPVFDFSQLNRTYLQDKRPSDREKLEMEFKQKMDALISEIERTAPNLKALDQYEAL 750

Query: 121 KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
           KEKER I+EEFEAARKEEKE+AD FNS+KQ+RYELF DAFNHIS NIDKIYKQLTKSNTH
Sbjct: 751 KEKERAITEEFEAARKEEKEIADLFNSVKQRRYELFTDAFNHISNNIDKIYKQLTKSNTH 810

Query: 181 PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
           PLGGTAYLNLEN+++PFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLF+IHS+RPS
Sbjct: 811 PLGGTAYLNLENDEDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFAIHSYRPS 870

Query: 241 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
           PFFILDEVDAALDNLNVAKVAGFIRSKSCEGAR   D DG +GFQSIVISLKDSFYDKAE
Sbjct: 871 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARGNPDADGGNGFQSIVISLKDSFYDKAE 930

Query: 301 ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
           ALVG    V  ++     SCSRTLTFDLTKYRES
Sbjct: 931 ALVG----VYRDSE---RSCSRTLTFDLTKYRES 957

[Close]
BLAST of Lsi02G021600 vs. NCBI nr
Match: gi|1009147210|ref|XP_015891292.1| (PREDICTED: structural maintenance of chromosomes protein 1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 528.9 bits (1361), Expect = 6.6e-147
Identity = 275/334 (82.34%), Postives = 302/334 (90.42%), Query Frame = 1 

Query: 1    MQEWKKKTSAATTSISKLNRQINSKETNIEQLITQKQEIVEKCELENIVLPTISDPMETE 60
            MQ+WKK+ S ATTSISKLNRQINSKET IEQL+++KQEI+EKCELE I LPTISDPMET+
Sbjct: 892  MQDWKKQASTATTSISKLNRQINSKETQIEQLMSRKQEIIEKCELEQISLPTISDPMETD 951

Query: 61   SLTPGPVFDFSQLIKSYELDKKSSDREKLETKFKRDIDALVSEIDRTAPNLKALDQYEAL 120
            S TPGPVFDFSQL ++Y  DK+ SDREKLE +FK+ +DAL+SEI+RTAPNLKALDQYEAL
Sbjct: 952  SSTPGPVFDFSQLNRTYLQDKRPSDREKLEMEFKQKMDALISEIERTAPNLKALDQYEAL 1011

Query: 121  KEKERVISEEFEAARKEEKEVADKFNSIKQKRYELFMDAFNHISGNIDKIYKQLTKSNTH 180
            KEKER I+EEFEAARKEEKE+AD FNS+KQ+RYELF DAFNHIS NIDKIYKQLTKSNTH
Sbjct: 1012 KEKERAITEEFEAARKEEKEIADLFNSVKQRRYELFTDAFNHISNNIDKIYKQLTKSNTH 1071

Query: 181  PLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPS 240
            PLGGTAYLNLEN+++PFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLF+IHS+RPS
Sbjct: 1072 PLGGTAYLNLENDEDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFAIHSYRPS 1131

Query: 241  PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARMIQDVDGSSGFQSIVISLKDSFYDKAE 300
            PFFILDEVDAALDNLNVAKVAGFIRSKSCEGAR   D DG +GFQSIVISLKDSFYDKAE
Sbjct: 1132 PFFILDEVDAALDNLNVAKVAGFIRSKSCEGARGNPDADGGNGFQSIVISLKDSFYDKAE 1191

Query: 301  ALVGDGQTVLTNNALVFHSCSRTLTFDLTKYRES 335
            ALVG    V  ++     SCSRTLTFDLTKYRES
Sbjct: 1192 ALVG----VYRDSE---RSCSRTLTFDLTKYRES 1218

The following BLAST results are available for this feature:
BLAST of Lsi02G021600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SMC1_ARATH2.5e-13072.89Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana GN=SMC1 ... [more]
SMC1_SCHPO2.0e-6342.94Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (st... [more]
SMC1A_XENLA1.7e-5437.02Structural maintenance of chromosomes protein 1A OS=Xenopus laevis GN=smc1a PE=1... [more]
SMC1A_HUMAN2.2e-5437.29Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 S... [more]
SMC1A_MOUSE6.5e-5436.46Structural maintenance of chromosomes protein 1A OS=Mus musculus GN=Smc1a PE=1 S... [more]
BLAST of Lsi02G021600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA44_CUCSA1.6e-16391.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372270 PE=4 SV=1[more]
A0A0K1NZK3_CUCSA2.3e-14695.09Structural maintenance of chromosomes protein 1 (Fragment) OS=Cucumis sativus PE... [more]
A0A059D3D3_EUCGR6.8e-14381.14Structural maintenance of chromosomes protein OS=Eucalyptus grandis GN=EUGRSUZ_B... [more]
M5W1L1_PRUPE7.6e-14281.14Structural maintenance of chromosomes protein OS=Prunus persica GN=PRUPE_ppa0003... [more]
B9T1A8_RICCO2.9e-14179.34Structural maintenance of chromosomes protein OS=Ricinus communis GN=RCOM_049914... [more]
BLAST of Lsi02G021600 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54670.31.4e-13172.89 Structural maintenance of chromosomes (SMC) family protein[more]
AT5G48600.21.1e-2730.13 structural maintenance of chromosome 3[more]
AT3G47460.13.8e-1226.55 Structural maintenance of chromosomes (SMC) family protein[more]
AT5G62410.16.6e-1224.90 structural maintenance of chromosomes 2[more]
AT2G27170.15.2e-0954.90 Structural maintenance of chromosomes (SMC) family protein[more]
BLAST of Lsi02G021600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092814|ref|XP_008447232.1|8.3e-16693.71PREDICTED: structural maintenance of chromosomes protein 1 [Cucumis melo][more]
gi|778727174|ref|XP_011659222.1|2.2e-16391.62PREDICTED: structural maintenance of chromosomes protein 1 [Cucumis sativus][more]
gi|700189448|gb|KGN44681.1|2.2e-16391.62hypothetical protein Csa_7G372270 [Cucumis sativus][more]
gi|1009147212|ref|XP_015891293.1|6.6e-14782.34PREDICTED: structural maintenance of chromosomes protein 1 isoform X2 [Ziziphus ... [more]
gi|1009147210|ref|XP_015891292.1|6.6e-14782.34PREDICTED: structural maintenance of chromosomes protein 1 isoform X1 [Ziziphus ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003395RecF/RecN/SMC_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion
cellular_component GO:0000785 chromatin
cellular_component GO:0008278 cohesin complex
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G021600.1Lsi02G021600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 22..304
score: 7.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 75..305
score: 7.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 103..273
score: 2.1E-31coord: 4..41
score: 2.1
NoneNo IPR availableunknownCoilCoilcoord: 15..42
score: -coord: 117..140
scor
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 1..72
score: 1.4E-199coord: 93..333
score: 1.4E
NoneNo IPR availablePANTHERPTHR18937:SF177STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 1coord: 1..72
score: 1.4E-199coord: 93..333
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G021600Cucumber (Gy14) v1cgylsiB631
Lsi02G021600Cucurbita maxima (Rimu)cmalsiB346
Lsi02G021600Cucurbita maxima (Rimu)cmalsiB822
Lsi02G021600Cucurbita moschata (Rifu)cmolsiB334
Lsi02G021600Cucurbita moschata (Rifu)cmolsiB809
Lsi02G021600Cucurbita pepo (Zucchini)cpelsiB111
Lsi02G021600Cucurbita pepo (Zucchini)cpelsiB258
Lsi02G021600Wild cucumber (PI 183967)cpilsiB517
Lsi02G021600Cucumber (Chinese Long) v2culsiB503
Lsi02G021600Melon (DHL92) v3.5.1lsimeB197
Lsi02G021600Watermelon (Charleston Gray)lsiwcgB159
Lsi02G021600Watermelon (97103) v1lsiwmB175
Lsi02G021600Cucumber (Gy14) v2cgyblsiB472
Lsi02G021600Melon (DHL92) v3.6.1lsimedB204
Lsi02G021600Silver-seed gourdcarlsiB012
Lsi02G021600Silver-seed gourdcarlsiB074
Lsi02G021600Cucumber (Chinese Long) v3cuclsiB538
Lsi02G021600Watermelon (97103) v2lsiwmbB212
Lsi02G021600Wax gourdlsiwgoB281