Lsi02G020550 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G020550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Self-incompatibility protein
Location	chr02 : 26709069 .. 26709575 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCATATGTCCCAACATCTCAATTACAATACAAAGGGAAAGGGAAAATGGGTAGAAGTTTGAGTTATTTGGTTGTGTTAATGAGTGTATTATTGGTGGTTGTTCATGAGCAATATTTATTTGTGGGAGCGGTTCTTCCTCCAGCGTTCGTTGAAAAATGGCACGTTCATGTGATTAATAGGCTGAGTAATGGAAAATTACTTGTGCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATGTCAATCAAGGGGGTGAGATTCAATGGAGTTTCAAGGAAAATGTTTGGGGAACAACTTTGTTTTGGTGTTTTATGAAGAAACCAAATGGTAGCTTTGCCTCTTTTGAGGTATTTTGGCATGAAACTGACCATTATTGGCTTCATTATAGGTGCACTTTACAAGGAACTTGTTTATGGACGGCTAAAGATGATGGAATTTACTTGAGAAATATTCCCGATGGAATTGAAGAAAGGATTCATGAATGGAAGAGGGGATAG

mRNA sequence

ATGGATTCATATGTCCCAACATCTCAATTACAATACAAAGGGAAAGGGAAAATGGGTAGAAGTTTGAGTTATTTGGTTGTGTTAATGAGTGTATTATTGGTGGTTGTTCATGAGCAATATTTATTTGTGGGAGCGGTTCTTCCTCCAGCGTTCGTTGAAAAATGGCACGTTCATGTGATTAATAGGCTGAGTAATGGAAAATTACTTGTGCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATGTCAATCAAGGGGGTGAGATTCAATGGAGTTTCAAGGAAAATGTTTGGGGAACAACTTTGTTTTGGTGTTTTATGAAGAAACCAAATGGTAGCTTTGCCTCTTTTGAGGTATTTTGGCATGAAACTGACCATTATTGGCTTCATTATAGGTGCACTTTACAAGGAACTTGTTTATGGACGGCTAAAGATGATGGAATTTACTTGAGAAATATTCCCGATGGAATTGAAGAAAGGATTCATGAATGGAAGAGGGGATAG

Coding sequence (CDS)

ATGGATTCATATGTCCCAACATCTCAATTACAATACAAAGGGAAAGGGAAAATGGGTAGAAGTTTGAGTTATTTGGTTGTGTTAATGAGTGTATTATTGGTGGTTGTTCATGAGCAATATTTATTTGTGGGAGCGGTTCTTCCTCCAGCGTTCGTTGAAAAATGGCACGTTCATGTGATTAATAGGCTGAGTAATGGAAAATTACTTGTGCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATGTCAATCAAGGGGGTGAGATTCAATGGAGTTTCAAGGAAAATGTTTGGGGAACAACTTTGTTTTGGTGTTTTATGAAGAAACCAAATGGTAGCTTTGCCTCTTTTGAGGTATTTTGGCATGAAACTGACCATTATTGGCTTCATTATAGGTGCACTTTACAAGGAACTTGTTTATGGACGGCTAAAGATGATGGAATTTACTTGAGAAATATTCCCGATGGAATTGAAGAAAGGATTCATGAATGGAAGAGGGGATAG

Protein sequence

MDSYVPTSQLQYKGKGKMGRSLSYLVVLMSVLLVVVHEQYLFVGAVLPPAFVEKWHVHVINRLSNGKLLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWKRG

Homology

[Close]

BLAST of Lsi02G020550 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 54  KWHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPN 113
           KWHVHV+N L  GK L  HCKS+D D+GE+ +  G E  WSFKEN +GTTL+WC+M   +
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-STD 77

Query: 114 GSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWK 167
              A+ +VFW E DH WL YRC  +  C+W AKDDGIY++ IP+  +E  H+W+
Sbjct: 78  QKHAALDVFWVEGDHSWLQYRCNWK-DCIWIAKDDGIYIKIIPENRDEFSHKWE 129

[Close]

BLAST of Lsi02G020550 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 32  LLVVVHEQYLFVGAVLPPAFVEKWHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEI 91
           L+ V+    L +   + P   + WHVHV+N LSN + L +HCKS+D D+GE  +  G E 
Sbjct: 8   LVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTES 67

Query: 92  QWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIY 151
            W FKEN + TTLFWC ++KP+    +F+VFW+E    +  +RC  +  C+WTAKD+GIY
Sbjct: 68  NWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNED---FFQFRCRYK-DCIWTAKDEGIY 127

Query: 152 LRNIPDGIEERIHEWKR 168
           L+NIP+G +E   +WK+
Sbjct: 128 LKNIPEGRDELWQKWKQ 140

[Close]

BLAST of Lsi02G020550 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-28
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1


Query: 32  LLVVVHEQYLFVGAVLPPAFVEKWHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEI 91
           L+VV     L +   + P   + WHVHV+N LSN + LLVHCKS+D D+GE  +  G E 
Sbjct: 12  LVVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEF 71

Query: 92  QWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIY 151
            W FKEN + TTLFWC++KK +     F VFW E    +  +RC  +  C+W AK +GIY
Sbjct: 72  AWKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKED---FFQFRCRYK-NCIWIAKVEGIY 131

Query: 152 LRNIPDGIEERIHEWKR 168
           L+NIP+G +E  HEWK+
Sbjct: 132 LKNIPEGHDELWHEWKQ 144

[Close]

BLAST of Lsi02G020550 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.2e-28
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 55  WHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPNG 114
           W +H+ N LS+G+ L VHCKS+D+D+GE+ ++ G E +W+FK N+W TTLFWC+++KP G
Sbjct: 30  WEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWNFKVNIWDTTLFWCYLRKPKG 89

Query: 115 SFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWK 167
               FE FW E    WL  +C     C W A+D GIYL++     +ERIH WK
Sbjct: 90  DQVRFEAFWVEKKTRWLRVKCD-GNICNWIAEDTGIYLKDNSTNEDERIHYWK 141

[Close]

BLAST of Lsi02G020550 vs. TrEMBL
Match: A0A061DNM1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 1


Query: 21  SLSYLVVLMSVLLVVVHEQYLFVGAV-LPPAFVEKWHVHVINRLSNGK-LLVHCKSRDTD 80
           S   LV+L+ + L  VH        V LPP F   WHV+V+N LSN + L +HCKS+D D
Sbjct: 10  SFDSLVLLLVLALATVHPYLAAADQVGLPPEFTS-WHVYVVNGLSNNRTLFLHCKSKDDD 69

Query: 81  IGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETDHYWLHYRCTLQG 140
           +G Q ++ G    WSF++N++G TLFWC+M K   + A+F+VFW +     L ++C L  
Sbjct: 70  LGIQNLSPGTSFTWSFRQNLFGRTLFWCYMSKDGNAHAAFKVFWQDA---LLFHKC-LWK 129

Query: 141 TCLWTAKDDGIYLRNIPDGIEERIHEWKRG 169
            C+WTAKDDGIY++++    +E   +W+ G
Sbjct: 130 NCIWTAKDDGIYIKDLARDSDEYRGQWQPG 154

[Close]

BLAST of Lsi02G020550 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 52  VEKWHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKK 111
           + +W V V+N L+ G+ L +HCKS++ D+GE  +       W+F EN+  +T FWC+M K
Sbjct: 38  ISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK 97

Query: 112 PNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWKRG 169
            NG   +  VFW   D   L +RC  +  C+WTAK DG+YL N   G +    +W+ G
Sbjct: 98  DNGHM-NVNVFW---DDVILFHRCGWK-NCIWTAKTDGLYLWNSASGEDVLSRKWEVG 150

[Close]

BLAST of Lsi02G020550 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-20
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 52  VEKWHVHVINRLSNGK-LLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKK 111
           + +W V V N L+ G+ L +HCKS++ D+G+  +       W+F EN+  +TLFWC+M K
Sbjct: 38  ISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK 97

Query: 112 PNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWKRG 169
            +G   + +VFW   D   L +RC  +  C+WTAK+DG+YL N   G +    +WK G
Sbjct: 98  DDGHM-NVKVFW---DDVILFHRCDWKN-CVWTAKNDGLYLWNSAIGEDVLSEKWKSG 150

[Close]

BLAST of Lsi02G020550 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 1


Query: 61  NRLSNGKLL-VHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMK-----KPNGS 120
           N+L + KLL VHC+S+D D+GE  +  G + +++F +N+W TT F C M      K +  
Sbjct: 33  NQLEHSKLLKVHCRSKDDDLGEHILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLD 92

Query: 121 FASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGI 159
           F ++E  W +           L+ +C W  ++DGIY     DG+
Sbjct: 93  FVAYETSWSK----------ALEASCKWIGREDGIYFSQ--DGV 124

[Close]

BLAST of Lsi02G020550 vs. TAIR10
Match: AT5G04347.1 (AT5G04347.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 59  VINRLSNGKLLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPNGSFASF 118
           V N L+N  L V C+S+D ++G+  +  G   + +F +NVW  TLFWC + K    F   
Sbjct: 26  VKNELNNKVLGVRCRSKDDNLGDHILRVGQMTKNNFDDNVWRRTLFWCNLWK-GPDFKLH 85

Query: 119 EVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEWKR 168
             F    D Y   ++  +    LW A++DGIY    P+   ++ ++W +
Sbjct: 86  VAF----DAYRSQWKADIGPRYLWIAREDGIYYTQHPETPPKKKYDWPK 129

[Close]

BLAST of Lsi02G020550 vs. TAIR10
Match: AT3G26880.1 (AT3G26880.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 1


Query: 60  INRLSNGKLLVHCKSRDTDIGEQYVNQGGEIQWSFKENVWGTTLFWCFMKKPNGSFASFE 119
           +N  +   L VHCKS++ DIG +Y+  G  + +SFK N WGTT FWC + K       ++
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKG----PDYK 91

Query: 120 VFWHETDHYWLHYRCTLQGTCLWTAKDDGIY 151
            +   T +  +        +  W A+DDGIY
Sbjct: 92  RYRGITAYQAIGLFAKDGSSYNWLARDDGIY 118

[Close]

BLAST of Lsi02G020550 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-35
Identity = 66/120 (55.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 47  LPPAFVEKWHVHVINRLSNGKLLVHCKSRDTDIGEQYV-NQGGEIQWSFKENVWGTTLFW 106
           LPP  V ++++HV+N LSN  L+VHC+S+D D+G  ++ N+G + QW+FKEN W TTLFW
Sbjct: 14  LPPPSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKENFWQTTLFW 73

Query: 107 CFMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEW 166
           C ++K N    SFE FW E+   WL  RC  QGTC+WTAKDDGIYLRN+P  I+E +H+W
Sbjct: 74  CKLEKQN-VHVSFESFWPESKSTWLRDRCGYQGTCIWTAKDDGIYLRNMPANIDEFVHKW 132

[Close]

BLAST of Lsi02G020550 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 1


Query: 29  MSVLLVVVHEQYLFVGAV--LPPAFVEKWHVHVINRLSNG-KLLVHCKSRDTDIGEQYVN 88
           M VLL+VV    +FVG +  +  A +EKW VHV+N L+   KLLVHCKS+D D+GE  VN
Sbjct: 12  MVVLLMVV---LMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDNDLGEHSVN 71

Query: 89  QGGEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAK 148
            G E  WSF+ N++ TTLFWC ++KPNG  ASFE FW E    WL+YRC L+  C W AK
Sbjct: 72  VGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRC-LESKCYWHAK 131

Query: 149 DDGIYLRNIPDGIEERIHEWK 167
           DDGIYL N PD  +  IH+W+
Sbjct: 132 DDGIYLANNPDKTQLLIHKWE 148

[Close]

BLAST of Lsi02G020550 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-34
Identity = 64/119 (53.78%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 48  PPAFVEKWHVHVINRLSNGKLLVHCKSRDTDIGEQY-VNQGGEIQWSFKENVWGTTLFWC 107
           PP    ++ VHV+N LS   L VHC+S++ D+G  + VN+G E QW+F+EN+WGTTLFWC
Sbjct: 14  PPPKPSRYFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFEENLWGTTLFWC 73

Query: 108 FMKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEW 166
            ++KP+ ++ +FE FW ET + WL  RC  QGTC+WTAKDDGIYLRN+P  ++E +H+W
Sbjct: 74  RLEKPD-AYVAFESFWPETKNVWLRDRCGNQGTCIWTAKDDGIYLRNMPTNVDEFVHKW 131

[Close]

BLAST of Lsi02G020550 vs. NCBI nr
Match: gi|449443935|ref|XP_004139731.1| (PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 65/120 (54.17%), Postives = 87/120 (72.50%), Query Frame = 1


Query: 48  PPAFVEKWHVHVINRLSNGKLLVHCKSRDTDIGEQY-VNQGGEIQWSFKENVWGTTLFWC 107
           PP    ++ VHV+N LS+  L VHCKS+D D+G  + VN G + QW+F+EN WGTTLFWC
Sbjct: 14  PPPTASRYFVHVVNGLSSHSLDVHCKSKDDDLGYHHMVNHGDDFQWNFEENFWGTTLFWC 73

Query: 108 FMKKPNGSFASFEVFWHETDHYWLHYRCTLQ-GTCLWTAKDDGIYLRNIPDGIEERIHEW 166
            ++ P  ++A FE FW E+ + WL YRC  Q GTC+WTAKDDGIYLRN+P  ++E +H+W
Sbjct: 74  RLENPE-AYADFESFWPESRNLWLRYRCGNQLGTCIWTAKDDGIYLRNMPANVDEFVHKW 132

[Close]

BLAST of Lsi02G020550 vs. NCBI nr
Match: gi|449443925|ref|XP_004139726.1| (PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 61/118 (51.69%), Postives = 88/118 (74.58%), Query Frame = 1


Query: 49  PAFVEKWHVHVINRLSNGKLLVHCKSRDTDIGEQY-VNQGGEIQWSFKENVWGTTLFWCF 108
           P    +++VHV+N LSN  L VHC+S+D D+G Q+ +N+G + QW+FK N++GTTLFWC 
Sbjct: 28  PVNPARYYVHVVNGLSNYDLGVHCQSKDNDLGYQHLINRGDDFQWNFKVNIFGTTLFWCK 87

Query: 109 MKKPNGSFASFEVFWHETDHYWLHYRCTLQGTCLWTAKDDGIYLRNIPDGIEERIHEW 166
           ++K + ++ SFE FW E+ ++WL  RC  QG C+WTAKDDGIYLRN P  ++E +H+W
Sbjct: 88  LEKQD-AYVSFESFWPESRNFWLRDRCGPQGNCIWTAKDDGIYLRNNPTNVDEYVHKW 144

The following BLAST results are available for this feature:

BLAST of Lsi02G020550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G020550 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VWE5_PRUPE	2.3e-30	52.63	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]
V4VUI1_9ROSI	1.7e-28	44.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]
V4TTV3_9ROSI	4.8e-28	46.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
A0A0A0K6N8_CUCSA	8.2e-28	47.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1	[more]
A0A061DNM1_THECC	2.0e-26	42.00	S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1	[more]

BLAST of Lsi02G020550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16295.1	1.5e-20	38.98	S-protein homologue 1	[more]
AT4G29035.1	4.3e-20	38.98	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	2.5e-12	33.65	Plant self-incompatibility protein S1 family	[more]
AT5G04347.1	1.3e-11	31.19	Plant self-incompatibility protein S1 family	[more]
AT3G26880.1	3.1e-10	35.16	Plant self-incompatibility protein S1 family	[more]

BLAST of Lsi02G020550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116532\|ref\|XP_008458117.1\|	7.6e-35	55.00	PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo]	[more]
gi\|659124369\|ref\|XP_008462123.1\|	1.3e-34	54.61	PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo]	[more]
gi\|659124355\|ref\|XP_008462115.1\|	2.9e-34	53.78	PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo]	[more]
gi\|449443935\|ref\|XP_004139731.1\|	3.8e-34	54.17	PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus]	[more]
gi\|449443925\|ref\|XP_004139726.1\|	2.1e-32	51.69	PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G020550.1	Lsi02G020550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 56..165 score: 5.6
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 15..168 score: 2.2
None	No IPR available	PANTHER	PTHR31232:SF7	S PROTEIN HOMOLOGUE 74-RELATED	coord: 15..168 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G020550	MELO3C024156	Melon (DHL92) v3.5.1	lsimeB194
Lsi02G020550	Cla97C09G172110	Watermelon (97103) v2	lsiwmbB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G020550	Bottle gourd (USVL1VR-Ls)	lsilsiB106
Lsi02G020550	Cucumber (Gy14) v1	cgylsiB081
Lsi02G020550	Cucurbita maxima (Rimu)	cmalsiB346
Lsi02G020550	Cucurbita maxima (Rimu)	cmalsiB480
Lsi02G020550	Cucurbita maxima (Rimu)	cmalsiB571
Lsi02G020550	Cucurbita maxima (Rimu)	cmalsiB824
Lsi02G020550	Cucurbita moschata (Rifu)	cmolsiB334
Lsi02G020550	Cucurbita moschata (Rifu)	cmolsiB464
Lsi02G020550	Cucurbita moschata (Rifu)	cmolsiB811
Lsi02G020550	Cucurbita pepo (Zucchini)	cpelsiB111
Lsi02G020550	Cucurbita pepo (Zucchini)	cpelsiB260
Lsi02G020550	Cucurbita pepo (Zucchini)	cpelsiB611
Lsi02G020550	Wild cucumber (PI 183967)	cpilsiB175
Lsi02G020550	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G020550	Cucumber (Chinese Long) v2	culsiB180
Lsi02G020550	Cucumber (Chinese Long) v2	culsiB503
Lsi02G020550	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G020550	Watermelon (Charleston Gray)	lsiwcgB206
Lsi02G020550	Watermelon (97103) v1	lsiwmB175
Lsi02G020550	Watermelon (97103) v1	lsiwmB194
Lsi02G020550	Cucumber (Gy14) v2	cgyblsiB164
Lsi02G020550	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G020550	Melon (DHL92) v3.6.1	lsimedB202
Lsi02G020550	Silver-seed gourd	carlsiB075
Lsi02G020550	Cucumber (Chinese Long) v3	cuclsiB196
Lsi02G020550	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G020550	Watermelon (97103) v2	lsiwmbB202
Lsi02G020550	Wax gourd	lsiwgoB283