Lsi02G019830 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G019830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Anaphase-promoting complex subunit 11
Location	chr02 : 25743639 .. 25746391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATACTGTTTGCATATATTTTTGTGCCCCTTGATTAATTGATTAATCCATATGTTTTCATGCTTGAAGATCAAATATGAAGTTCAACGTGGATATGATTATCTACTCAACTTTAATCTTAATCCTTGTTTAATTCTAGATGGTTGGGCATGGTGATAAAACCCCTATTTTGGATAAAAAGAAGAATACGTTATAATGGAAGGGTTTACAAAACAAGGCCCTCAGGTTTGTTCAACCAAATTGTTGCAATAGTGTTGTGATTGGTTGTATTAATGTTACCATTAATCATCTCTATTTTGCTGATGATGTCATAATTTTTGGTGTCTTAGCTATGATAAACTTCACATGATCTCTGAAATTTCTGAAAAAAGTAAACCTCTAGTGTCACTGGAAAAGGAATCCTTGGCATAATGCAATTATTTGAAAAGGATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAGCCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGAAGATTGAATAGATAAAACAATGTATATTTCTAATAGGGATTGACTGGCTTTTATTCAATCTGTCTTGTCTAGCCTCACCGCTTAATTCATTTTCATCTTTCAGTTGCCAAACAAAGTTGCTTCAACGATTCAATGAAGGATGAGGGATGTCCTCTTGGCTATAGAAGGATTTGAGGATGGCAGTGATCTTAAGGACATTTTTTCTAGTGACATAAATGGTGGTGGGCTTGCCCTAGCCAACCTCAAAGATTGGCATATAGTCCTTATCAGTTATCACCAAATGGGTCCGGATTCCCCCATGAAAGAGAGTCTATATAGCCATCATTACTGGTAAATCTTGGATTACCCCATGAAAGAGAGTCTATATAGCCTATCATTACTGGTAAGTCTCATGAAAGAGAGTCTATATAGCCTATCATTACCGGTAAATCTGTACGTGCGGAAACTTCAAAGAAACAGCCCTTGAAAATTTGGTGTTAAATGCAAGTCTCTCTTACAGTTTTATTTGGTTTCAAGATTAGCAGTAGCCATCATATTAGCTTCTAGGGAATGACACTTTTTCCTTCTATTTCCCTGCTTTAAGGTAAGAATTCAGAGGTTTGCAATCATCTCTTTCTACCCTGTCAAATTACTCAGTCTTTCGCTTTCCTCTTACCACAATTCAACTTGAATTGGTATCATCCATGTTCCACAGCTCATGCCACTGAGCAGGTCCTTTTGGGCCACCTCTTCTGAAGCAAGGCAAAGGTTCTTGGAAGTGTCTAGTTTCAAGGTGTTTCGTTGGAAACTTAGCTTAGAAAAAGCCACAAAATCTTTCAAGGAAAAATTTGCAACTTTATGAAATTTGGTAGATTAGTTACTCAACATTTTTACTTGGTGTGCTTTTCTATTACTCTCTTTTGTAATTTAAGTCTTTTTATTATTGCCACTGAAAGGAATTTTCTGTATTCTCTTCGACTTATTTGGGTTGATTTCTTGTCATATGCTTTTGTATCTCTTTTCTCTCGTCATTCTCGACCAAATATAATATGACCATTCCAATTATATACCTGTCAGTATGATAGTTCTGTTGGCTGTTGTACAATATTCATCTGCATCAATACATTAGAAATGGAATCTTTCAATCGACTGCATCTACAATTAGATTTTCTTTGACTCAGATTCCCTCCGTAAACGTATTTTCGGGGTTAAAAAAGAGTACGTTCCCACATTTCTTTTCTTATAGTTCCTACTTGGAGTATAATTAACTACTTTATTATCCTAAGATAATTTCATCCCTTCCGTAAAATATAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCCCAAGACGAAACTTGTGGAATCTGTAGGATGGCCTTTGATGGTTGTTGCCCTGATTGCAAGCTCCCTGGGGATGATTGTCCATTGAGTGAGTCAACTAGCCTTGTCATATCCTCAAACTTTTTCTCCTGCTATCAATCATTGCAACTCACAGTTGATTCTTGATGTTTAAGATTATACACACACACACGTATTATAAGTGAGCTCAGAAAAAACGTACTCTAATTAATAACCAATTGAAGGTTGCACCGTGTTTTAGTAAATTCTTTAGATGTTTATTTTTCCGTGAACAAGATGGTAATGACCCCGTATTTTGTTTTTCTTTAAATGCAGTTTGGGGTGCATGCAACCATGCTTTCCATCTTCATTGCATCCTAAAATGGGTGAATTCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGGTGAGACCACAATTGTATTACTTGTGAGTAGTAATAATTGTTACATTTTTTTCACTCACCCAAGGCCTAGAGACATTAAAGATTTTCCATATTAAATTCACCGACGATTTGAACGTTTGACACCTAGTTAGGTGTTACTGAGAGACAGCCGGCCTTAGCTAACGGGGCAACTTCTTGGGGCTATTTTAAGGTTACATTTTTTTCCAATGTATAATATTTGAGAACTGAAGCAGAGTGTGTGTTTCTCAAGTCTTGAAGTTTAATCCTATCAGGTTTAGATGATATGTGAAATAACCATTAAATCTTTGTTTTCTTTCTGTCATTGGGTGCTATAGAGAAAGTGGAATTGTGG

mRNA sequence

ATGGGTAAGAATTCAGAGGTTTGCAATCATCTCTTTCTACCCTGTCAAATTACTCAGTCTTTCGCTTTCCTCTTACCACAATTCAACTTGAATTGGTATCATCCATGTTCCACAGCTCATGCCACTGAGCAGATTCCCTCCGTAAACGTATTTTCGGGGTGGCATGCTGTTGCATCATGGACTTGGAATGCCCAAGACGAAACTTGTGGAATCTGTAGGATGGCCTTTGATGGTTGTTGCCCTGATTGCAAGCTCCCTGGGGATGATTGTCCATTGATTTGGGGTGCATGCAACCATGCTTTCCATCTTCATTGCATCCTAAAATGGGTGAATTCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGGTGAGACCACAATTGTATTACTTGTGAGTAGTAATAATTGTTACATTTTTTTCACTCACCCAAGGCCTAGAGACATTAAAGATTTTCCATATTAAATTCACCGACGATTTGAACGTTTGACACCTAGTTAGGTGTTACTGAGAGACAGCCGGCCTTAGCTAACGGGGCAACTTCTTGGGGCTATTTTAAGGTTACATTTTTTTCCAATGTATAATATTTGAGAACTGAAGCAGAGTGTGTGTTTCTCAAGTCTTGAAGTTTAATCCTATCAGGTTTAGATGATATGTGAAATAACCATTAAATCTTTGTTTTCTTTCTGTCATTGGGTGCTATAGAGAAAGTGGAATTGTGG

Coding sequence (CDS)

ATGGGTAAGAATTCAGAGGTTTGCAATCATCTCTTTCTACCCTGTCAAATTACTCAGTCTTTCGCTTTCCTCTTACCACAATTCAACTTGAATTGGTATCATCCATGTTCCACAGCTCATGCCACTGAGCAGATTCCCTCCGTAAACGTATTTTCGGGGTGGCATGCTGTTGCATCATGGACTTGGAATGCCCAAGACGAAACTTGTGGAATCTGTAGGATGGCCTTTGATGGTTGTTGCCCTGATTGCAAGCTCCCTGGGGATGATTGTCCATTGATTTGGGGTGCATGCAACCATGCTTTCCATCTTCATTGCATCCTAAAATGGGTGAATTCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGGTGA

Protein sequence

MGKNSEVCNHLFLPCQITQSFAFLLPQFNLNWYHPCSTAHATEQIPSVNVFSGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

Homology

[Close]

BLAST of Lsi02G019830 vs. Swiss-Prot
Match: APC11_ARATH (Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=3)

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-46
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 8   WHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 67

Query: 114 TSQAHCPMCRREWQFK 130
           TSQAHCPMCRREWQFK
Sbjct: 68  TSQAHCPMCRREWQFK 83

[Close]

BLAST of Lsi02G019830 vs. Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query: 114 TSQAHCPMCRREWQFK 130
             Q HCPMCR+EW+FK
Sbjct: 68  QVQQHCPMCRQEWKFK 83

[Close]

BLAST of Lsi02G019830 vs. Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query: 114 TSQAHCPMCRREWQFK 130
             Q HCPMCR+EW+FK
Sbjct: 68  QVQQHCPMCRQEWKFK 83

[Close]

BLAST of Lsi02G019830 vs. Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query: 114 TSQAHCPMCRREWQFK 130
             Q HCPMCR+EW+FK
Sbjct: 68  QVQQHCPMCRQEWKFK 83

[Close]

BLAST of Lsi02G019830 vs. Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query: 114 TSQAHCPMCRREWQFK 130
             Q HCPMCR+EW+FK
Sbjct: 68  QVQQHCPMCRQEWKFK 83

[Close]

BLAST of Lsi02G019830 vs. TrEMBL
Match: A0A0A0K9J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306890 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.3e-52
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 4   NSEVCNHLFLPCQITQSF--AFLLPQFNLNWYHPCSTAHATEQIPSVN--------VFSG 63
           NSEV N LF P ++ +    +    Q +LNW +PC T    E    ++        V+  
Sbjct: 60  NSEVFNLLFYPVELLELLLSSSQFSQLSLNWCYPCPTQAIDEIFLDLDALRKRMFGVWKE 119

Query: 64  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 123
           WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 120 WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 179

Query: 124 TSQAHCPMCRREWQFKG 131
           TSQAHCPMCRREWQFKG
Sbjct: 180 TSQAHCPMCRREWQFKG 196

[Close]

BLAST of Lsi02G019830 vs. TrEMBL
Match: F6I4I3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00290 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-45
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 44  QIPSVNVFSGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHL 103
           ++  +N++  WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHL
Sbjct: 51  ELQILNMWYRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHL 110

Query: 104 HCILKWVNSQTSQAHCPMCRREWQFKG 131
           HCILKWVNSQT QAHCPMCRREWQFKG
Sbjct: 111 HCILKWVNSQTPQAHCPMCRREWQFKG 137

[Close]

BLAST of Lsi02G019830 vs. TrEMBL
Match: G7JEI7_MEDTR (Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncatula GN=MTR_4g007410 PE=4 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-45
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 12  WHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 71

Query: 114 TSQAHCPMCRREWQFKG 131
           TSQAHCPMCRREWQFKG
Sbjct: 72  TSQAHCPMCRREWQFKG 88

[Close]

BLAST of Lsi02G019830 vs. TrEMBL
Match: A0A068USV5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031460001 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-45
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 52  SGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVN 111
           S WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVN
Sbjct: 48  SAWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVN 107

Query: 112 SQTSQAHCPMCRREWQFKG 131
           SQT QAHCPMCRREWQFKG
Sbjct: 108 SQTPQAHCPMCRREWQFKG 126

[Close]

BLAST of Lsi02G019830 vs. TrEMBL
Match: A0A0B2QX23_GLYSO (Anaphase-promoting complex subunit 11 OS=Glycine soja GN=glysoja_035494 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.7e-45
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 52  SGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVN 111
           S WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWG CNHAFHLHCILKWVN
Sbjct: 69  SRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVN 128

Query: 112 SQTSQAHCPMCRREWQFKG 131
           SQTSQAHCPMCRREWQFKG
Sbjct: 129 SQTSQAHCPMCRREWQFKG 147

[Close]

BLAST of Lsi02G019830 vs. TAIR10
Match: AT3G05870.1 (AT3G05870.1 anaphase-promoting complex/cyclosome 11)

HSP 1 Score: 186.8 bits (473), Expect = 8.4e-48
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 11  WHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 70

Query: 114 TSQAHCPMCRREWQFK 130
           TSQAHCPMCRREWQFK
Sbjct: 71  TSQAHCPMCRREWQFK 86

[Close]

BLAST of Lsi02G019830 vs. TAIR10
Match: AT3G42830.1 (AT3G42830.1 RING/U-box superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-14
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDC-----KLPGDDCPLIWGACNHAFHLHCILK 113
           W AVA W W+   + C ICR      C +C         ++C + WG CNHAFH HCI +
Sbjct: 34  WSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISR 93

Query: 114 WVNSQTSQAHCPMCRREWQFK 130
           W+  +T Q  CP+   EW+F+
Sbjct: 94  WL--KTRQV-CPLDVCEWEFQ 111

[Close]

BLAST of Lsi02G019830 vs. TAIR10
Match: AT5G26640.1 (AT5G26640.1 BEST Arabidopsis thaliana protein match is: anaphase-promoting complex/cyclosome 11 (TAIR:AT3G05870.2))

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1


Query: 61 TWNAQDETCGICRMAFDGCCPDCKLPGDDCPL 93
          TW+AQDETCG+CRM FD  CPDCKLP DDCPL
Sbjct: 5  TWDAQDETCGLCRMPFDASCPDCKLPEDDCPL 36

[Close]

BLAST of Lsi02G019830 vs. TAIR10
Match: AT5G20570.2 (AT5G20570.2 RING-box 1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 32/105 (30.48%), Postives = 45/105 (42.86%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIW-------------- 113
           W AVA W W+   + C ICR      C +C+        ++C + W              
Sbjct: 37  WSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWEDDQNNCNKYFCIL 96

Query: 114 ----------GACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 130
                     G CNHAFH HCI +W+  +T Q  CP+   EW+F+
Sbjct: 97  DCSMKDDHLEGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQ 138

[Close]

BLAST of Lsi02G019830 vs. NCBI nr
Match: gi|700189248|gb|KGN44481.1| (hypothetical protein Csa_7G306890 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 9.0e-52
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 4   NSEVCNHLFLPCQITQSF--AFLLPQFNLNWYHPCSTAHATEQIPSVN--------VFSG 63
           NSEV N LF P ++ +    +    Q +LNW +PC T    E    ++        V+  
Sbjct: 60  NSEVFNLLFYPVELLELLLSSSQFSQLSLNWCYPCPTQAIDEIFLDLDALRKRMFGVWKE 119

Query: 64  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 123
           WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 120 WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 179

Query: 124 TSQAHCPMCRREWQFKG 131
           TSQAHCPMCRREWQFKG
Sbjct: 180 TSQAHCPMCRREWQFKG 196

[Close]

BLAST of Lsi02G019830 vs. NCBI nr
Match: gi|778726555|ref|XP_011659120.1| (PREDICTED: anaphase-promoting complex subunit 11 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 50  VFSGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKW 109
           V+  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKW
Sbjct: 4   VWKEWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKW 63

Query: 110 VNSQTSQAHCPMCRREWQFKG 131
           VNSQTSQAHCPMCRREWQFKG
Sbjct: 64  VNSQTSQAHCPMCRREWQFKG 84

[Close]

BLAST of Lsi02G019830 vs. NCBI nr
Match: gi|659123949|ref|XP_008461919.1| (PREDICTED: anaphase-promoting complex subunit 11 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ
Sbjct: 8   WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 67

Query: 114 TSQAHCPMCRREWQFKG 131
           TSQAHCPMCRREWQFKG
Sbjct: 68  TSQAHCPMCRREWQFKG 84

[Close]

BLAST of Lsi02G019830 vs. NCBI nr
Match: gi|645252253|ref|XP_008232037.1| (PREDICTED: anaphase-promoting complex subunit 11 [Prunus mume])

HSP 1 Score: 189.9 bits (481), Expect = 2.8e-45
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 48  VNVFSGWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCIL 107
           VN+   WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCIL
Sbjct: 3   VNILQ-WHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCIL 62

Query: 108 KWVNSQTSQAHCPMCRREWQFKG 131
           KWVNSQTSQAHCPMCRREWQFKG
Sbjct: 63  KWVNSQTSQAHCPMCRREWQFKG 84

[Close]

BLAST of Lsi02G019830 vs. NCBI nr
Match: gi|1009116436|ref|XP_015874772.1| (PREDICTED: anaphase-promoting complex subunit 11-like [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 2.8e-45
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 54  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ 113
           WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWG+CNHAFHLHCILKWVNSQ
Sbjct: 5   WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGSCNHAFHLHCILKWVNSQ 64

Query: 114 TSQAHCPMCRREWQFKG 131
           TSQAHCPMCRREWQFKG
Sbjct: 65  TSQAHCPMCRREWQFKG 81

The following BLAST results are available for this feature:

BLAST of Lsi02G019830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APC11_ARATH	1.5e-46	98.68	Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=3	[more]
APC11_BOVIN	4.1e-36	72.37	Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1	[more]
APC11_MOUSE	4.1e-36	72.37	Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1	[more]
APC11_HUMAN	1.5e-35	71.05	Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1	[more]
APC11_PONAB	1.5e-35	71.05	Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1	[more]

BLAST of Lsi02G019830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9J6_CUCSA	6.3e-52	68.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306890 PE=4 SV=1	[more]
F6I4I3_VITVI	1.5e-45	87.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00290 PE=4 SV=...	[more]
G7JEI7_MEDTR	3.3e-45	98.70	Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncat...	[more]
A0A068USV5_COFCA	4.4e-45	96.20	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031460001 PE=4 SV=1	[more]
A0A0B2QX23_GLYSO	5.7e-45	96.20	Anaphase-promoting complex subunit 11 OS=Glycine soja GN=glysoja_035494 PE=4 SV=...	[more]

BLAST of Lsi02G019830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05870.1	8.4e-48	98.68	anaphase-promoting complex/cyclosome 11	[more]
AT3G42830.1	6.1e-14	39.51	RING/U-box superfamily protein	[more]
AT5G26640.1	3.3e-12	81.25	BEST Arabidopsis thaliana protein match is: anaphase-promoting compl...	[more]
AT5G20570.2	1.4e-10	30.48	RING-box 1	[more]

BLAST of Lsi02G019830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189248\|gb\|KGN44481.1\|	9.0e-52	68.61	hypothetical protein Csa_7G306890 [Cucumis sativus]	[more]
gi\|778726555\|ref\|XP_011659120.1\|	4.3e-46	96.30	PREDICTED: anaphase-promoting complex subunit 11 [Cucumis sativus]	[more]
gi\|659123949\|ref\|XP_008461919.1\|	1.3e-45	100.00	PREDICTED: anaphase-promoting complex subunit 11 [Cucumis melo]	[more]
gi\|645252253\|ref\|XP_008232037.1\|	2.8e-45	93.98	PREDICTED: anaphase-promoting complex subunit 11 [Prunus mume]	[more]
gi\|1009116436\|ref\|XP_015874772.1\|	2.8e-45	98.70	PREDICTED: anaphase-promoting complex subunit 11-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024991	Apc11
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005680	anaphase-promoting complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G019830.1	Lsi02G019830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 80..123 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 52..129 score: 4.2
IPR024991	Anaphase-promoting complex subunit 11	PFAM	PF12861	zf-ANAPC11	coord: 53..129 score: 3.9
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 54..129 score: 7.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 53..129 score: 4.01

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G019830	Csa7G306890	Cucumber (Chinese Long) v2	culsiB515
Lsi02G019830	CSPI07G12760	Wild cucumber (PI 183967)	cpilsiB529
Lsi02G019830	CmaCh01G009820	Cucurbita maxima (Rimu)	cmalsiB411
Lsi02G019830	Cla016407	Watermelon (97103) v1	lsiwmB175
Lsi02G019830	ClCG09G010060	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G019830	MELO3C028650.2	Melon (DHL92) v3.6.1	lsimedB211
Lsi02G019830	Cla97C09G172810	Watermelon (97103) v2	lsiwmbB212
Lsi02G019830	Bhi09G001272	Wax gourd	lsiwgoB280
Lsi02G019830	CsGy7G011820	Cucumber (Gy14) v2	cgyblsiB482
Lsi02G019830	CsaV3_7G024700	Cucumber (Chinese Long) v3	cuclsiB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G019830	Bottle gourd (USVL1VR-Ls)	lsilsiB122
Lsi02G019830	Cucumber (Gy14) v1	cgylsiB080
Lsi02G019830	Cucumber (Gy14) v1	cgylsiB081
Lsi02G019830	Cucurbita maxima (Rimu)	cmalsiB019
Lsi02G019830	Cucurbita maxima (Rimu)	cmalsiB273
Lsi02G019830	Cucurbita maxima (Rimu)	cmalsiB652
Lsi02G019830	Cucurbita moschata (Rifu)	cmolsiB007
Lsi02G019830	Cucurbita moschata (Rifu)	cmolsiB262
Lsi02G019830	Cucurbita moschata (Rifu)	cmolsiB397
Lsi02G019830	Cucurbita moschata (Rifu)	cmolsiB643
Lsi02G019830	Cucurbita pepo (Zucchini)	cpelsiB338
Lsi02G019830	Cucurbita pepo (Zucchini)	cpelsiB448
Lsi02G019830	Cucurbita pepo (Zucchini)	cpelsiB634
Lsi02G019830	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G019830	Cucumber (Chinese Long) v2	culsiB503
Lsi02G019830	Melon (DHL92) v3.5.1	lsimeB189
Lsi02G019830	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G019830	Melon (DHL92) v3.6.1	lsimedB198
Lsi02G019830	Silver-seed gourd	carlsiB058
Lsi02G019830	Silver-seed gourd	carlsiB248
Lsi02G019830	Silver-seed gourd	carlsiB756
Lsi02G019830	Cucumber (Chinese Long) v3	cuclsiB548