Lsi02G019640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G019640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Gigantea protein 1B
Location	chr02 : 25533202 .. 25536935 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTGTTCATATTTGGATTAAGAATTGTTAATAACTTCATTTTGTTGGTTATGATTTATTATTTGTTGGATTTATGTTGTTTTTCTTTGTATTTCATCTTGTAGAGGTTTGGTGGTTTGGTTATGGCAATTGTAAATATGGGATTGTGAACTTGGGAACTTCTCAGAAACTGAAACTTGGAACATCATTAGCAGTAGATTAGTTTTGGTGAATTTCTTAAGGGACCTGCGGCTAGACTTTGGATATTTAATACATTTCTTGGAGAGATTTTTCTTTTTCGAGTTCGTGGCTAATCGAAATCGGTTGTTGTTTTGGGATGTTGAATTACGACATTTGGATTCTTGATTGGTAGCATATGAAGATGGAGTTTGTGCATTTACCTGGTTGATGTGTTGGCAATTGAGGAGGTAGCTTTAAGGGAAATTTATAGAAAATAGATGGCAACTTCAAGTGAGAGATGGATTGATAGACTTCAATTATCGTCCTTGTTCTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGTACAAAAGCTATCATGTTTTATGTATGAATCAATTTTTAGGATGGTACTTTCCCACATATTATGACATTGTTTTTCAATATAGTCCAAGTTGATTAGTCTGTTGTAATAAATCGTGAGTCAGCCGAAGTTGCATTTATCATCTTTCAGAAAGCTGCTGAGTCCTAGCTCTTAAATAATGTTCTATTGGTTTCCTTGAATTTTTCTTCATCGATAACGTTGTATGATGTGTTTTAAATTTTTAATCCTTTATCATGTGGAAAATTGCTCAAATTGTTCATAGAATTAGAATATGCTTCAAAGTTGCCAAAATGGGAGTGCTCTATCTGCTTTTCTAATTGGAGCAGATTTTCCATTAGTTTCAGAGGTTCTCCTCCCTTTTGTATATTTAGTTTAATAATGAAATATTGTACTTGTAGGTTATTTCCTTTTAAAAAATATTAAAAAGAAAAAAGAAGAAGAAGCAGCAAGCAATCCATCTGCTTTTAGTTTTCTCTTTCGTTTTTTTTTTTTTTTTTGAAAAGGAAACGAAGCTTTTCATTTAAATAATAGAAAGAGACTATTGCTCAAAATACAGGGAAACAAAAAAAATAAAACAATGAAGAACAAGTGCAATCCAAATACATAAAACTATGCTGGAAAAGTAAAGGCATACCATTTTAAACTTACATCTTGTATGGAAAAACCAACAAAATGCTTTGAAAGAGAACACCAGGTGGATGCATGAATTCGAGCAATTTCTAGATGATCGAACCATGCTATAAACTTATCTTGAAAGAATCTTTGATTCCTTTCAAACCATAAATTAGCAAGGCTTTAACCGTATTTGACCATGAAAGTTGAGGCATAATTTTCAATGAAGGACCAACCAAAAGCAGGATCGTGTTGTCTTTGAAATTGTCTCCGAATACCCACTGAATGTGAAAAAATGAGAATAAACGCCCCCAACAAGCCTTGGCATAACAACATTCAAAAAACAGATGTTGCAAGCTTTCACAGTTGGCCTTACAAAGAGGACAAGTTGAAGGAGATAAAGTGTGAGAAGGCAGCTTTCTTTGCAAAGTACCTGAACTATTCAAAGCCCCGAAGATCATAATCCAAATGAGAATGTAACTCATTTTGGACTCTTGGTTTTCCATAGTGCTTTAAATATCAATTTATTCATAGGCTCTAAAAGCCTCAAGTGCTTAGAAAGGGAACTCACTGAAAATTTTCCTGAAGGCTCCAAGGACCAAATTCTACAATTAGCAACATCTACCATTCGTTTTTTTTTTTTTTCTGATAAAGATCGTAACCAATTTTGAAACTCAACAATCTCCTCCTCTTCCAACAAACATCAAAAAAGTATAGCCCATGATAGAGTATTCACATCCCAATGACCTGACACTGAACCATTGGGAAGAATAGCAATGCTAAACAGTCTAGGAAAATTGACTTTCAAAGGCAAATCATCAAGCCAAAAATCCAACCAGAAGGATATTCTACTCCCATTTCCAAGCTTAGAAACCGCTAAACCGCTAAACCTTCAACTTGCAGCCAAACTTTGGATATGCTAATCCATGGGCTACGGAGACTTAGCCCAAATTGTCCAGATGTATGCCAGTTGAAGTTGAAGAGACCTTTACCATGAATACTCTGAACAACTTAAACCCAAAGAGAGTCTTTCTCATTGAAGAACCGCCATCCCCATTTTGTCACAAAGCCAAATTTCTATTTTTCAGACCACCAAATCCTAGACCACCATCCAATTGTAGATTTGAAACCAGCTCCCATCTAGCCAAATGGTTAATCCTACTTCCTTTGTGTCCTTCCCAAAAGAATGATTTCATTATATGCTCCATAATCAAAGTCACCTTGGTTGGCATCAGAAAAGAAGACATAATAAACTGGAAGATTTGATAGACTGCTTTGCAAAGTGTAAGTCTGGCACCACGAGATAAGTTACAATGCTTCCATCTATCCAGCTTCTTTTGAACTCTATCAATTACTGGTTGCCAAAAAGAAACTTTTTTAGGATATCCTCCAGCAGAAGCCCAAGATGCATAAATGCCAAGTGTTCACTCTTACAATTTAGACAGGATGCAGTTGATATGAGCTTAGCCTTAGATACATTTACTCCACACAAAGCTGATTTTTTCCAGTTAACCTTCTGGCTGGAGCACCATTCAAATAACTCAATTGTTTTAACAAGAGAGTCCAACATCCCATCATCATACTTGCAGAAAATTGATGTGTCATCAGCAAATTGTAGTACAGAAACGTGCACTTTATCTTTTCCCACGATGAAGCCTTCATAAACCCCATTTTCATGAATAAGGGTGATAAGCGCATTCAAAACTTCACTTACAAGTATAAACAGAAAAGGAGAGATAGGATCCCCTTGTCTTATTCCTCTTGATGCTAAAATTCTTCCCCTTGGTCTACCATTAACGAACACCGAAAATTTTAGGTCTCAAACACAACCATTGATCCAAGAAATCCACCTAGGTTTGAAACCTTTGAGAATTAGGACTTGCTCTAGGAAATCCCAGACAACTCTATTGAAAGCTTTCTCCATATCAATTTTGAGGATCCAACCTTTTTTTCTTTTTTGCATGATACTCTTCCACAACTTGAACTTCGTTAGCAATAAGATCTGGATCCAAAATCTGTCTCCCCAAAATGAAAGCACAATGAGAGGAAGAAATAATCCATCTGCTTTTAGTTAGCTACTATCAAAACTAAATACATGCTAAAGGAATATATACGCGTGAACTTCTGCTGGAAATTAAACATGTTTAATCTATGTATATACATAACGGATGCATGAATGTATCTCAATTAGATATTTACGTATATAATGTTTTGAGGTTCCTAAATGTTGATATATGTATGTATGTGCTTGCTCAATTTGGGAGACTTAGCAAACGGAGTTTGTGTCTTATGAGGAATTTCAGTACAAGGGACTTAATATTTTTGCTTAATTTTCCTTTATAAGTTTCTGCCACATGCTTCTAACTACCTATTAACTTCTTGCTTGTAATGGTTAGACTTATTTAAAGAGTAGATTGTTAAAGGGGCTACCTTTTTACTATTCATGTGTTTTTCTATTATTTTTTTTTCAAAGGAAGCAAAAAACCTTTATGGGTATAAGGCTAAAAGATACAAGCTACCCCAAAGGGATAAGGAAAGCATAAAAAACATTGGAACAATACAAAAGAAAATATAA

mRNA sequence

ATGCAGGTTTGGTGGTTTGGTTATGGCAATTGTAAATATGGGATTGTGAACTTGGGAACTTCTCAGAAACTGAAACTTGGAACATCATTAGCAATGGCAACTTCAAGTGAGAGATGGATTGATAGACTTCAATTATCGTCCTTGTTCTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGAAGCAAAAAACCTTTATGGGTATAAGGCTAAAAGATACAAGCTACCCCAAAGGGATAAGGAAAGCATAAAAAACATTGGAACAATACAAAAGAAAATATAA

Coding sequence (CDS)

ATGCAGGTTTGGTGGTTTGGTTATGGCAATTGTAAATATGGGATTGTGAACTTGGGAACTTCTCAGAAACTGAAACTTGGAACATCATTAGCAATGGCAACTTCAAGTGAGAGATGGATTGATAGACTTCAATTATCGTCCTTGTTCTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGAAGCAAAAAACCTTTATGGGTATAAGGCTAAAAGATACAAGCTACCCCAAAGGGATAAGGAAAGCATAAAAAACATTGGAACAATACAAAAGAAAATATAA

Protein sequence

MQVWWFGYGNCKYGIVNLGTSQKLKLGTSLAMATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLYGYKAKRYKLPQRDKESIKNIGTIQKKI

Homology

[Close]

BLAST of Lsi02G019640 vs. TrEMBL
Match: A0A0L9VKI1_PHAAN (Uncharacterized protein (Fragment) OS=Phaseolus angularis GN=LR48_Vigan10g136500 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 29 SLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          S++MA SSERWIDRLQ SSLFWPPP +DQQRK+
Sbjct: 1  SVSMAASSERWIDRLQFSSLFWPPPLEDQQRKD 33

[Close]

BLAST of Lsi02G019640 vs. TrEMBL
Match: V7C1B0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G088300g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 29 SLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          S++MA SSERWIDRLQ SSLFWPPP +DQQRK+
Sbjct: 2  SVSMAASSERWIDRLQFSSLFWPPPLEDQQRKD 34

[Close]

BLAST of Lsi02G019640 vs. TrEMBL
Match: A0A0R0HXK5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G221500 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-06
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 28 TSLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          +S +MA SSERWIDRLQ SSLFWPPP D QQRK+
Sbjct: 4  SSSSMAASSERWIDRLQYSSLFWPPPPDGQQRKD 37

[Close]

BLAST of Lsi02G019640 vs. TrEMBL
Match: A0A0B2QAM8_GLYSO (Protein GIGANTEA OS=Glycine soja GN=glysoja_011513 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-06
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 28 TSLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          +S +MA SSERWIDRLQ SSLFWPPP D QQRK+
Sbjct: 4  SSSSMAASSERWIDRLQYSSLFWPPPPDGQQRKD 37

[Close]

BLAST of Lsi02G019640 vs. TAIR10
Match: AT1G22770.1 (AT1G22770.1 gigantea protein (GI))

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1


Query: 30 LAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          +A ++SSERWID LQ SSL WPPP D QQ K+
Sbjct: 1  MASSSSSERWIDGLQFSSLLWPPPRDPQQHKD 32

[Close]

BLAST of Lsi02G019640 vs. NCBI nr
Match: gi|778726488|ref|XP_011659108.1| (PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 32 MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY 67
          MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Sbjct: 1  MATSSERWIDRLQLSSLFWPPPDDDQQRKVQCSAY 35

[Close]

BLAST of Lsi02G019640 vs. NCBI nr
Match: gi|659123936|ref|XP_008461912.1| (PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 32 MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY 67
          MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Sbjct: 1  MATSSERWIDRLQLSSLFWPPPDDDQQRKVQCSAY 35

[Close]

BLAST of Lsi02G019640 vs. NCBI nr
Match: gi|920715385|gb|KOM55473.1| (hypothetical protein LR48_Vigan10g136500, partial [Vigna angularis])

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 29 SLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          S++MA SSERWIDRLQ SSLFWPPP +DQQRK+
Sbjct: 1  SVSMAASSERWIDRLQFSSLFWPPPLEDQQRKD 33

[Close]

BLAST of Lsi02G019640 vs. NCBI nr
Match: gi|593703064|ref|XP_007151935.1| (hypothetical protein PHAVU_004G088300g [Phaseolus vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 29 SLAMATSSERWIDRLQLSSLFWPPPDDDQQRKE 62
          S++MA SSERWIDRLQ SSLFWPPP +DQQRK+
Sbjct: 2  SVSMAASSERWIDRLQFSSLFWPPPLEDQQRKD 34

The following BLAST results are available for this feature:

BLAST of Lsi02G019640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G019640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9VKI1_PHAAN	3.7e-06	78.79	Uncharacterized protein (Fragment) OS=Phaseolus angularis GN=LR48_Vigan10g136500...	[more]
V7C1B0_PHAVU	3.7e-06	78.79	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G088300g PE=4 SV=1	[more]
A0A0R0HXK5_SOYBN	8.3e-06	76.47	Uncharacterized protein OS=Glycine max GN=GLYMA_10G221500 PE=4 SV=1	[more]
A0A0B2QAM8_GLYSO	8.3e-06	76.47	Protein GIGANTEA OS=Glycine soja GN=glysoja_011513 PE=4 SV=1	[more]

BLAST of Lsi02G019640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22770.1	2.0e-06	65.63	gigantea protein (GI)	[more]

BLAST of Lsi02G019640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726488\|ref\|XP_011659108.1\|	5.7e-08	85.71	PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus]	[more]
gi\|659123936\|ref\|XP_008461912.1\|	5.7e-08	85.71	PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo]	[more]
gi\|920715385\|gb\|KOM55473.1\|	5.4e-06	78.79	hypothetical protein LR48_Vigan10g136500, partial [Vigna angularis]	[more]
gi\|593703064\|ref\|XP_007151935.1\|	5.4e-06	78.79	hypothetical protein PHAVU_004G088300g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:2000028	regulation of photoperiodism, flowering
biological_process	GO:0006950	response to stress
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009637	response to blue light
biological_process	GO:0009409	response to cold
biological_process	GO:0010218	response to far red light
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0010378	temperature compensation of the circadian clock
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G019640.1	Lsi02G019640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G019640	CmaCh09G011230	Cucurbita maxima (Rimu)	cmalsiB019
Lsi02G019640	MELO3C024067.2	Melon (DHL92) v3.6.1	lsimedB198
Lsi02G019640	CsaV3_7G024490	Cucumber (Chinese Long) v3	cuclsiB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G019640	Watermelon (97103) v2	lsiwmbB212
Lsi02G019640	Wax gourd	lsiwgoB280
Lsi02G019640	Bottle gourd (USVL1VR-Ls)	lsilsiB122
Lsi02G019640	Cucumber (Gy14) v1	cgylsiB081
Lsi02G019640	Cucurbita maxima (Rimu)	cmalsiB411
Lsi02G019640	Cucurbita maxima (Rimu)	cmalsiB652
Lsi02G019640	Cucurbita moschata (Rifu)	cmolsiB007
Lsi02G019640	Cucurbita moschata (Rifu)	cmolsiB397
Lsi02G019640	Cucurbita moschata (Rifu)	cmolsiB643
Lsi02G019640	Cucurbita pepo (Zucchini)	cpelsiB448
Lsi02G019640	Cucurbita pepo (Zucchini)	cpelsiB634
Lsi02G019640	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G019640	Cucumber (Chinese Long) v2	culsiB503
Lsi02G019640	Melon (DHL92) v3.5.1	lsimeB189
Lsi02G019640	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G019640	Watermelon (97103) v1	lsiwmB175
Lsi02G019640	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G019640	Silver-seed gourd	carlsiB248
Lsi02G019640	Silver-seed gourd	carlsiB594