Lsi02G017330 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G017330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Appr-1-P processing enzyme family protein
Location	chr02 : 23023742 .. 23024853 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCCAACTTCTCTGACCATGTTTATGGTCTATATACTGTTAGTCGGCCAGACATGGGATGGATGAAGAGATTGCAGCAGATTCTTGGCCGAAAACACCAGCGTAACCTTCATGTATGAACTCCAACTTATTCTGGTATTTAATACGTGCAGACCAAAAATCTGCCTTCATATTTCTAATCAATCTGTATGATTTTTATAGGCAATATATGTTCTTCACCCAACCTTTGGATTGAAAGCTGCAGTATTGGCCATGCAATTGCTTGTGGATAATACGGTAGGTTTGTGTTTGTTATAATTTCTGATATTATAGCACTGAATGAGATTAAGTCTTGAGTAATTGATATCCAGGTATGGCACAAAGTTGTGTACATTGATCGACTACTGCAGCTGTTCAAATATGTTCCTCGCGAGCAGTTGACCATCCCTGATTTTGTATTTCAGTGAGTTGTTGTTTGCTTTAAACTCTTTTTCAACAATGATTTAGTTCTTTCTATTAATTAAAAGTTTGATACTTTGGAAAACTTGTGCACATCCACAAATTTAGAGCATAGGATGGTTCCCTTTGTTATGCCTGAGTTTGTGAAGATTACAATTCAGAAAAATTAGACGCCTCCTTGTGTGATAAATGCAGGCACGACTTAGAAGTAAATGGAGGGAAGGGCCTGATTGTGGATCCTCGAACAAAATACGTATACCATCGGCCTTAACATCAAGGAAAATGTATGGATAATTCGTCAAGCCACAAATCACAGCATTGGCCATGGTTTTTATGCTGCTTAATCATATCATTTAGCGTCTGTTTTTAGGTGGGTAGGTGTTGAATATGTTTATAGAAATGGTATCCCATTTTCTTTCATTTTTTATTCCTAAAGTATTGGTTTTTTTTGTCTTGTGAAGGTGAAATTACGTTATTCCTTTTGTATGTTATGTTGGATGAGCTTTTAATAAAATGGAAGTGGTTTGTTGAAATTTATATTAGGTGATCTGTTCACGATTTATATTCATCTTGTTCACGATTGTTTTGGCAATGTGATTATGGAAAATGTGGTCTGTTCTGCTATATCAATGTAACCAACTTATCGATGTTTAATATCGGGATCTTCAAG

mRNA sequence

ATGTTATCCAACTTCTCTGACCATGTTTATGGTCTATATACTGTTAGTCGGCCAGACATGGGATGGATGAAGAGATTGCAGCAGATTCTTGGCCGAAAACACCAGCGTAACCTTCATGCAATATATGTTCTTCACCCAACCTTTGGATTGAAAGCTGCAGTATTGGCCATGCAATTGCTTGTGGATAATACGGTATGGCACAAAGTTGTGTACATTGATCGACTACTGCAGCTGTTCAAATATGTTCCTCGCGAGCAGTTGACCATCCCTGATTTTGTATTTCAGCACGACTTAGAAGTAAATGGAGGGAAGGGCCTGATTGTGGATCCTCGAACAAAATACGTATACCATCGGCCTTAACATCAAGGAAAATGTATGGATAATTCGTCAAGCCACAAATCACAGCATTGGCCATGGTTTTTATGCTGCTTAATCATATCATTTAGCGTCTGTTTTTAGGTGGGTAGGTGTTGAATATGTTTATAGAAATGGTATCCCATTTTCTTTCATTTTTTATTCCTAAAGTATTGGTTTTTTTTGTCTTGTGAAGGTGAAATTACGTTATTCCTTTTGTATGTTATGTTGGATGAGCTTTTAATAAAATGGAAGTGGTTTGTTGAAATTTATATTAGGTGATCTGTTCACGATTTATATTCATCTTGTTCACGATTGTTTTGGCAATGTGATTATGGAAAATGTGGTCTGTTCTGCTATATCAATGTAACCAACTTATCGATGTTTAATATCGGGATCTTCAAG

Coding sequence (CDS)

ATGTTATCCAACTTCTCTGACCATGTTTATGGTCTATATACTGTTAGTCGGCCAGACATGGGATGGATGAAGAGATTGCAGCAGATTCTTGGCCGAAAACACCAGCGTAACCTTCATGCAATATATGTTCTTCACCCAACCTTTGGATTGAAAGCTGCAGTATTGGCCATGCAATTGCTTGTGGATAATACGGTATGGCACAAAGTTGTGTACATTGATCGACTACTGCAGCTGTTCAAATATGTTCCTCGCGAGCAGTTGACCATCCCTGATTTTGTATTTCAGCACGACTTAGAAGTAAATGGAGGGAAGGGCCTGATTGTGGATCCTCGAACAAAATACGTATACCATCGGCCTTAA

Protein sequence

MLSNFSDHVYGLYTVSRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLLQLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP

Homology

[Close]

BLAST of Lsi02G017330 vs. Swiss-Prot
Match: GACY_DICDI (Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-13
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 1


Query: 16  SRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRL 75
           ++P M WMK++  I  RK+++NL  +Y++HPT  +K  +   +  + +  W K+ YID L
Sbjct: 435 NKPSMAWMKKVYTIFNRKYKKNLKGLYIVHPTTWIKFTLGIFKHFLSSKFWKKLTYIDDL 494

Query: 76  LQLFKYVPREQLTIPDFVFQH 97
            +LFK  PREQL +P+ +  H
Sbjct: 495 GELFKTFPREQLALPNAIMMH 515

[Close]

BLAST of Lsi02G017330 vs. Swiss-Prot
Match: RHG08_MOUSE (Rho GTPase-activating protein 8 OS=Mus musculus GN=Arhgap8 PE=2 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-09
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 10  YGLYTVSRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKV 69
           YGL + ++P +GW++   +   RK+++NL A+YV+HPT  +KA     + L+ +    KV
Sbjct: 77  YGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALWNIFKPLISHKFGKKV 136

Query: 70  VYIDRLLQLFKYVPREQLTIPDFVFQHD 98
            Y   L +L +++  +QL IP  V ++D
Sbjct: 137 TYCSNLRELREHLQCDQLLIPPEVVRYD 164

[Close]

BLAST of Lsi02G017330 vs. Swiss-Prot
Match: GDAP2_XENTR (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-09
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1


Query: 16  SRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRL 75
           + PD  ++K +  I+  K+++NL A+Y +HPTF  K +         + +  KV  ++ L
Sbjct: 398 NHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTTFTVSGLKDKVHQVESL 457

Query: 76  LQLFKYVPREQLTIPDFVFQHDLEVNG 103
            QLF  VP EQ+ IP FV  +D   NG
Sbjct: 458 HQLFSAVPPEQIEIPPFVLDYDARENG 484

[Close]

BLAST of Lsi02G017330 vs. Swiss-Prot
Match: RHG01_MOUSE (Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-09
Identity = 26/88 (29.55%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 10  YGLYTVSRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKV 69
           +GL + ++P + W++   +   RK+++N+ A+Y++HPT  +K  ++  + L+      K+
Sbjct: 127 HGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGRKI 186

Query: 70  VYIDRLLQLFKYVPREQLTIPDFVFQHD 98
            Y++ L +L ++V  EQL IP  V ++D
Sbjct: 187 FYVNYLSELSEHVKLEQLGIPRQVLKYD 214

[Close]

BLAST of Lsi02G017330 vs. Swiss-Prot
Match: RHG01_HUMAN (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-09
Identity = 26/88 (29.55%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 10  YGLYTVSRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKV 69
           +GL + ++P + W++   +   RK+++N+ A+Y++HPT  +K  ++  + L+      K+
Sbjct: 127 HGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKI 186

Query: 70  VYIDRLLQLFKYVPREQLTIPDFVFQHD 98
            Y++ L +L ++V  EQL IP  V ++D
Sbjct: 187 FYVNYLSELSEHVKLEQLGIPRQVLKYD 214

[Close]

BLAST of Lsi02G017330 vs. TrEMBL
Match: A0A0A0KS03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487740 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-52
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDN VW+KVVYIDRLL
Sbjct: 457 RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNVVWNKVVYIDRLL 516

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 517 QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 559

[Close]

BLAST of Lsi02G017330 vs. TrEMBL
Match: W9RFR4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017239 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-49
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWM+RLQQILGRKHQRNLHAIYVLHPTFGLKAAV A+QL VDN VW KVVY+DRLL
Sbjct: 460 QPDLGWMRRLQQILGRKHQRNLHAIYVLHPTFGLKAAVFALQLFVDNVVWKKVVYVDRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 520 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 562

[Close]

BLAST of Lsi02G017330 vs. TrEMBL
Match: I3T4Y2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.6e-49
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWMKRLQQILGRKHQRNLHAIYVLHPT GLK AV A+QLLVDN VW KVVY+DRLL
Sbjct: 64  QPDLGWMKRLQQILGRKHQRNLHAIYVLHPTIGLKMAVFALQLLVDNAVWKKVVYVDRLL 123

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 124 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 166

[Close]

BLAST of Lsi02G017330 vs. TrEMBL
Match: I3SV09_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.6e-49
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWMKRLQQILGRKHQRNLHAIYVLHPT GLK AV A+QLLVDN VW KVVY+DRLL
Sbjct: 64  QPDLGWMKRLQQILGRKHQRNLHAIYVLHPTIGLKMAVFALQLLVDNAVWKKVVYVDRLL 123

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 124 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 166

[Close]

BLAST of Lsi02G017330 vs. TrEMBL
Match: M5XY84_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003605m1g PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.0e-49
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWM+R+QQILGRKHQRNLHAIYVLHPTFGLKAA+ A+QL VDN VW KVVY+DRLL
Sbjct: 460 QPDLGWMRRVQQILGRKHQRNLHAIYVLHPTFGLKAAIFALQLFVDNLVWKKVVYVDRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 520 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 562

[Close]

BLAST of Lsi02G017330 vs. TAIR10
Match: AT1G69340.1 (AT1G69340.1 appr-1-p processing enzyme family protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.1e-49
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWMKRL+QILGRKHQRNL AIYVLHPTF LKA +L MQ  VDN VW KVVY DRLL
Sbjct: 460 QPDLGWMKRLEQILGRKHQRNLQAIYVLHPTFHLKATILTMQFFVDNVVWKKVVYADRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVY RP
Sbjct: 520 QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP 562

[Close]

BLAST of Lsi02G017330 vs. NCBI nr
Match: gi|449452092|ref|XP_004143794.1| (PREDICTED: protein GDAP2 homolog [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDN VW+KVVYIDRLL
Sbjct: 457 RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNVVWNKVVYIDRLL 516

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 517 QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 559

[Close]

BLAST of Lsi02G017330 vs. NCBI nr
Match: gi|659131461|ref|XP_008465697.1| (PREDICTED: protein GDAP2 homolog [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDN VW+KVVYIDRLL
Sbjct: 457 RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNVVWNKVVYIDRLL 516

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 517 QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 559

[Close]

BLAST of Lsi02G017330 vs. NCBI nr
Match: gi|703117932|ref|XP_010101490.1| (hypothetical protein L484_017239 [Morus notabilis])

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-49
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWM+RLQQILGRKHQRNLHAIYVLHPTFGLKAAV A+QL VDN VW KVVY+DRLL
Sbjct: 460 QPDLGWMRRLQQILGRKHQRNLHAIYVLHPTFGLKAAVFALQLFVDNVVWKKVVYVDRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 520 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 562

[Close]

BLAST of Lsi02G017330 vs. NCBI nr
Match: gi|658009262|ref|XP_008339836.1| (PREDICTED: protein GDAP2 homolog isoform X1 [Malus domestica])

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PD+GWMKR+QQILGRKHQRNLHAIYVLHPTFGLKAA+ A+QL VDN VW KVVY+DRLL
Sbjct: 460 QPDLGWMKRVQQILGRKHQRNLHAIYVLHPTFGLKAAIFALQLFVDNVVWKKVVYVDRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 520 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 562

[Close]

BLAST of Lsi02G017330 vs. NCBI nr
Match: gi|658030917|ref|XP_008350911.1| (PREDICTED: protein GDAP2 homolog [Malus domestica])

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 17  RPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNTVWHKVVYIDRLL 76
           +PDMGWM+R+QQILGRKHQRNLHAIYVLHPTFGLKAA+ A+QL VDN VW KVVY+DRLL
Sbjct: 460 QPDMGWMRRVQQILGRKHQRNLHAIYVLHPTFGLKAAIFALQLFVDNVVWKKVVYVDRLL 519

Query: 77  QLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 120
           QLF+YVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP
Sbjct: 520 QLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 562

The following BLAST results are available for this feature:

BLAST of Lsi02G017330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GACY_DICDI	7.6e-13	38.27	Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1	[more]
RHG08_MOUSE	3.9e-09	34.09	Rho GTPase-activating protein 8 OS=Mus musculus GN=Arhgap8 PE=2 SV=3	[more]
GDAP2_XENTR	8.7e-09	35.63	Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis P...	[more]
RHG01_MOUSE	8.7e-09	29.55	Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1	[more]
RHG01_HUMAN	8.7e-09	29.55	Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1	[more]

BLAST of Lsi02G017330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS03_CUCSA	1.2e-52	98.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487740 PE=4 SV=1	[more]
W9RFR4_9ROSA	1.6e-49	90.29	Uncharacterized protein OS=Morus notabilis GN=L484_017239 PE=4 SV=1	[more]
I3T4Y2_LOTJA	4.6e-49	90.29	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I3SV09_LOTJA	4.6e-49	90.29	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M5XY84_PRUPE	6.0e-49	88.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003605m1g PE=4 SV=1	[more]

BLAST of Lsi02G017330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69340.1	3.1e-49	86.41	appr-1-p processing enzyme family protein	[more]

BLAST of Lsi02G017330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452092\|ref\|XP_004143794.1\|	1.7e-52	98.06	PREDICTED: protein GDAP2 homolog [Cucumis sativus]	[more]
gi\|659131461\|ref\|XP_008465697.1\|	1.7e-52	98.06	PREDICTED: protein GDAP2 homolog [Cucumis melo]	[more]
gi\|703117932\|ref\|XP_010101490.1\|	2.3e-49	90.29	hypothetical protein L484_017239 [Morus notabilis]	[more]
gi\|658009262\|ref\|XP_008339836.1\|	2.9e-49	89.32	PREDICTED: protein GDAP2 homolog isoform X1 [Malus domestica]	[more]
gi\|658030917\|ref\|XP_008350911.1\|	2.9e-49	89.32	PREDICTED: protein GDAP2 homolog [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001251	CRAL-TRIO_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G017330.1	Lsi02G017330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001251	CRAL-TRIO lipid binding domain	GENE3D	G3DSA:3.40.525.10		coord: 13..87 score: 7.
IPR001251	CRAL-TRIO lipid binding domain	PFAM	PF13716	CRAL_TRIO_2	coord: 15..98 score: 2.5
IPR001251	CRAL-TRIO lipid binding domain	unknown	SSF52087	CRAL/TRIO domain	coord: 12..87 score: 2.3
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 17..119 score: 5.5
None	No IPR available	PANTHER	PTHR11106:SF65	SUBFAMILY NOT NAMED	coord: 17..119 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G017330	Csa5G487740	Cucumber (Chinese Long) v2	culsiB347
Lsi02G017330	CSPI05G16570	Wild cucumber (PI 183967)	cpilsiB351
Lsi02G017330	Cucsa.275390	Cucumber (Gy14) v1	cgylsiB448
Lsi02G017330	CmaCh05G009170	Cucurbita maxima (Rimu)	cmalsiB722
Lsi02G017330	CmoCh12G006540	Cucurbita moschata (Rifu)	cmolsiB156
Lsi02G017330	CmoCh05G009310	Cucurbita moschata (Rifu)	cmolsiB711
Lsi02G017330	Cla003253	Watermelon (97103) v1	lsiwmB170
Lsi02G017330	MELO3C002919	Melon (DHL92) v3.5.1	lsimeB162
Lsi02G017330	ClCG09G020740	Watermelon (Charleston Gray)	lsiwcgB155
Lsi02G017330	MELO3C002919.2	Melon (DHL92) v3.6.1	lsimedB171
Lsi02G017330	Cla97C09G182160	Watermelon (97103) v2	lsiwmbB208
Lsi02G017330	Bhi06G000657	Wax gourd	lsiwgoB208
Lsi02G017330	Cp4.1LG07g05460	Cucurbita pepo (Zucchini)	cpelsiB668
Lsi02G017330	Cp4.1LG11g07550	Cucurbita pepo (Zucchini)	cpelsiB084
Lsi02G017330	CsGy5G016400	Cucumber (Gy14) v2	cgyblsiB318
Lsi02G017330	Carg26438	Silver-seed gourd	carlsiB970
Lsi02G017330	CsaV3_5G025630	Cucumber (Chinese Long) v3	cuclsiB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None