Lsi02G016710 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCCTAAATCTCCTCGGCACCTATTCAACGGCAACTATGTTTCATCACCGCCACACACGTGGCAGCTTGCCAATGCTCCCATCCTCAAGCTGGTGTGTCACCGGCCGGTGCTCGTAGTATACCCCTTACTGTAAGCTTACTGGCAACTTGTTTTGCCGGTTACGAAGCGGTTATTTCTGGTGTATAAAAAGGCCAGTGGAAGCATAAGGAACAAAATTCAAACCACAAAGCATTCAGCAAAGAAATACAGAGTGAAAAAGGAAAATTCTTCTTCAATCTCTTAGAACTGAAACAAAAAAAAAAAAAATGCCAATCCATAAATTTACAATCGGAACACCGGGAGAGGCGAGCCAACCGGACGCGATCAAGGCTGCATTTGCCGAATTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTGGCTTTTGGTAAGTTCTAATTGAGTTCAAATCGTTGATTCGATGTTCTATGGTCCGCATTTCGTTTGAATTTCGATTACTTGTGGATTTGTTCGATTTCTGAACTGATAGTAGTCAATTAGGAATTTAACGAGTTGTCTGAGCATTTTCTGGACTCAAATTTGAAGATCTTCAGTTGTAATTGAGCTATTGATTGCGCATTGATGTGTAGGTTTATAATTTTGGCAGATAAGTTAACGGACGGTGGTTCTGCGACGCCGTCGGGGTTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTCTTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACCGGTGGAAAGGTATGATGCTGCCAAAACTTTTATTTATTTATTTAAGTTCAACACGAATGTTAATTATAAGCTATGCTGATTAGTGAATTTTCATTGATATGTCTATATTTCCACGTTTTCAGGGATTCGATATCGATATAGAGGTGAATCGATATTTTTATTATATCGTAGACAAATCTACGAAACACACAATATAAGCATCAAATTGACGCTAATATAAATATAATTTGAAAATAATAAATTATTTATTTATTAATTTAATTTAATTTTAATCTTTTTTTTTTTTATAATTTTTCTAGAAATATCCATCAAAATTGATATTTTATCGATATTTCCATAAAAATTTCTGTAAAATTAAGACTTCGATATTTCCATCGACATCGATATTTTAAACCTTGTTAATGAGTAAGAATGTATTTGGCTCGTATAACCATTTTTAGTTTAGTGAGAATATAGATTCGGATATCTGCGTTGGAATAGATAGTATTGTATTTTTGGCTTAGAGTTGCATCATTATATTTTACATTCATGGATTACATTCTATTACTACTAAGGTAAGTCTTTTCACTTAATAGCCAATTTATAGAAGATATATGACTATTCAAATTACTATGAATTGGTGTATAGATATCTCAAATCTCCAAATTAGAACACTTAATTTTTTCATCAATACTTTTCTTCCAAGTCCCATCAAGAATTCGTAAATGTTTGGTTTGCTACTCAAAGTAAGATCATGTTATCTTTTAAGTAATGATTAAGTACAGCCTAGGCTACATCTAATCATGTGCATCTCTTTTTCTACCCACAAAGTAAAAATAAAAAATATATTTTTTTAAAAAAAACTATTTGCCACATGTCAGAATTTTATTGGCCTATCCCTCAAGATGCACCAAGGTAGATACAGCCAAGGAGTACCCAAGTTTTTTTCTTATCTTTTTATGAATGTAACACCTCATTCCACAAAATCTAGTAAATACCACTTTGTGGAGTAAATCAAACAAACTTTGATGGGAGAAAAATGTTGATGGAAAAAGTATTTTTTTTTCAATTTTAGGAAGAGACGTATTTATAGTCTATAGATTAATTTGTGACTATTCAAATAGTCATATCCCTTATACAAAAGTGGTTATCAAATGAAAAAATCACTTGACCATAGTGAAGGAAGGCAACCTATGGATGCGAAAAGATGAAACTCGGTCACATACAATTTATTCCAATGATCAATTCCTATTCTTTTAGATAAAAATATATACTTTAATAAGTTGAATTACGTTTGCATGAATTTTAGTTCTAAAATTTAAAAACTAGCAAACTTTATTTTTAATTTAACCAAAAACTATCCAATATTACCCTTAGTTGTAGTGGTAATTGATGATACACATGAGGTTTAAATCTCACAATAAATTTTTCTTTGGTCCCAAAATTTTTACAACATTCAGTTTAGTCCTTAAATTATTACTCTTGAAATTAAGAAGTTTTTAGAAATGATCTAAATTTTATGATTTAAAAATCCAAAAATAATTTTAATTTTTGTTTGAAATTAGAAAGATTTAAAATTAATGCAACTAAAATTTTGTGTTTGGATCTTCACGGAAAAAAAATGAAATTCTCACCAATATAAAATTTAATGTTGATTTATTAATACAAAATTTAAATATGATAAAGTGAAAAAATAATTTACTTCAAAATTCTAACATCTATATGTCTATGTTGGCTTTGTATTTGACAAATCCATCAGTTTGTTTTGTTTTGTTTTTTAAAACATTCCATTGTGTTCTATTTCATGGGATAGCAAATAATATAATTTATTTGTAAATAGTTACAATTTGACATTACTAAAAATCCTAGATAAACTAACTGATGAATAAAAAACAATAATTCTGGTTTCAAACTTTCAAATTTTGAATATTATATTCGTTGAACTTCGAATTGAAAGCATAACTATTTCAATCTTTGTAGTTATTTTGCCCATTCATATTTACTAACCAATGTCGCTCTACAATATGTCCAACCAACACTTGTTAAAGCTACACTTTTTATTAAATAAAGATAAGAACCAAAATGATTATTACTTTCTTTATCCATCAACTAAAATACATATCCAATAAACTAAGAGATCCAAATGAAATAGACCTAACTGAAATAAACATGAAAGTTTAGAGAACATAATGACTATTTTTCATAGTTCAACAACTAAAATAGAAAACTAAAAACTACCATGATTATAGAATATGTAGCATAGTCTAGGATTTAAAATTTAGTATTTGCAAAGTGAGAGAATATGATTATCCCTCCCTTGATGATTTCCCTCTTATCTTTCATCTGCAATATATATACAATGTGGGTGGTAACGAAACGCAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAATAGATCCAAAGAGGGAGAATTTGGGAATCATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCACCCGGTCATGGACCCATCACTGGGTTTACTGGCTTGGTCCTATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACCCTCTTTATCTCAGACTCCACGCATGATCCTCTTACTCAGTATAATGATTTCTAG ATGGATCCTAAATCTCCTCGGCACCTATTCAACGGCAACTATGTTTCATCACCGCCACACACGTGGCAGCTTGCCAATGCTCCCATCCTCAAGCTGGTGTGTCACCGGCCGGTGCTCGTAGTATACCCCTTACTGTTTATAATTTTGGCAGATAAGTTAACGGACGGTGGTTCTGCGACGCCGTCGGGGTTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTCTTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACCGGTGGAAAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAATAGATCCAAAGAGGGAGAATTTGGGAATCATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCACCCGGTCATGGACCCATCACTGGGTTTACTGGCTTGGTCCTATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACCCTCTTTATCTCAGACTCCACGCATGATCCTCTTACTCAGTATAATGATTTCTAG ATGGATCCTAAATCTCCTCGGCACCTATTCAACGGCAACTATGTTTCATCACCGCCACACACGTGGCAGCTTGCCAATGCTCCCATCCTCAAGCTGGTGTGTCACCGGCCGGTGCTCGTAGTATACCCCTTACTGTTTATAATTTTGGCAGATAAGTTAACGGACGGTGGTTCTGCGACGCCGTCGGGGTTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTCTTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACCGGTGGAAAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAATAGATCCAAAGAGGGAGAATTTGGGAATCATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCACCCGGTCATGGACCCATCACTGGGTTTACTGGCTTGGTCCTATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACCCTCTTTATCTCAGACTCCACGCATGATCCTCTTACTCAGTATAATGATTTCTAG MDPKSPRHLFNGNYVSSPPHTWQLANAPILKLVCHRPVLVVYPLLFIILADKLTDGGSATPSGLIVASLAHAFAFFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWIAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAIDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVVTRSWTHHWVYWLGPMAGAAIATIVYDTLFISDSTHDPLTQYNDF
BLAST of Lsi02G016710 vs. Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 8.0e-84 Identity = 151/202 (74.75%), Postives = 170/202 (84.16%), Query Frame = 1
BLAST of Lsi02G016710 vs. Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 1.0e-83 Identity = 154/208 (74.04%), Postives = 178/208 (85.58%), Query Frame = 1
BLAST of Lsi02G016710 vs. Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 5.7e-82 Identity = 150/202 (74.26%), Postives = 171/202 (84.65%), Query Frame = 1
BLAST of Lsi02G016710 vs. Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 1.8e-80 Identity = 149/208 (71.63%), Postives = 173/208 (83.17%), Query Frame = 1
BLAST of Lsi02G016710 vs. Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2) HSP 1 Score: 299.7 bits (766), Expect = 3.1e-80 Identity = 147/211 (69.67%), Postives = 172/211 (81.52%), Query Frame = 1
BLAST of Lsi02G016710 vs. TrEMBL
Match: A0A0A0KQU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505790 PE=3 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 1.3e-101 Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 1
BLAST of Lsi02G016710 vs. TrEMBL
Match: A0A0F7G5V2_9ROSI (TIP41 OS=Betula luminifera GN=TIP41 PE=2 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 6.8e-90 Identity = 169/209 (80.86%), Postives = 186/209 (89.00%), Query Frame = 1
BLAST of Lsi02G016710 vs. TrEMBL
Match: K0IVT1_HYDMC (Vacuolar aluminum transporter OS=Hydrangea macrophylla GN=VALT PE=2 SV=1) HSP 1 Score: 333.2 bits (853), Expect = 2.9e-88 Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 1
BLAST of Lsi02G016710 vs. TrEMBL
Match: A0A0P0LK40_SALPP (Tonoplast intrinsic protein 12 OS=Salix purpurea GN=TIP1;2 PE=2 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 8.3e-88 Identity = 165/209 (78.95%), Postives = 180/209 (86.12%), Query Frame = 1
BLAST of Lsi02G016710 vs. TrEMBL
Match: A0A0D2VRM4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G253100 PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.1e-87 Identity = 165/215 (76.74%), Postives = 186/215 (86.51%), Query Frame = 1
BLAST of Lsi02G016710 vs. TAIR10
Match: AT4G01470.1 (AT4G01470.1 tonoplast intrinsic protein 1;3) HSP 1 Score: 311.2 bits (796), Expect = 5.9e-85 Identity = 154/208 (74.04%), Postives = 178/208 (85.58%), Query Frame = 1
BLAST of Lsi02G016710 vs. TAIR10
Match: AT2G36830.1 (AT2G36830.1 gamma tonoplast intrinsic protein) HSP 1 Score: 300.4 bits (768), Expect = 1.0e-81 Identity = 149/208 (71.63%), Postives = 173/208 (83.17%), Query Frame = 1
BLAST of Lsi02G016710 vs. TAIR10
Match: AT3G26520.1 (AT3G26520.1 tonoplast intrinsic protein 2) HSP 1 Score: 299.7 bits (766), Expect = 1.8e-81 Identity = 147/211 (69.67%), Postives = 172/211 (81.52%), Query Frame = 1
BLAST of Lsi02G016710 vs. TAIR10
Match: AT1G17810.1 (AT1G17810.1 beta-tonoplast intrinsic protein) HSP 1 Score: 239.6 bits (610), Expect = 2.2e-63 Identity = 117/210 (55.71%), Postives = 151/210 (71.90%), Query Frame = 1
BLAST of Lsi02G016710 vs. TAIR10
Match: AT1G73190.1 (AT1G73190.1 Aquaporin-like superfamily protein) HSP 1 Score: 237.3 bits (604), Expect = 1.1e-62 Identity = 117/204 (57.35%), Postives = 148/204 (72.55%), Query Frame = 1
BLAST of Lsi02G016710 vs. NCBI nr
Match: gi|659127039|ref|XP_008463493.1| (PREDICTED: aquaporin TIP1-3-like isoform X1 [Cucumis melo]) HSP 1 Score: 387.9 bits (995), Expect = 1.4e-104 Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 1
BLAST of Lsi02G016710 vs. NCBI nr
Match: gi|449464216|ref|XP_004149825.1| (PREDICTED: aquaporin TIP1-3-like [Cucumis sativus]) HSP 1 Score: 377.5 bits (968), Expect = 1.9e-101 Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 1
BLAST of Lsi02G016710 vs. NCBI nr
Match: gi|819320205|gb|AKG50111.1| (TIP41 [Betula luminifera]) HSP 1 Score: 338.6 bits (867), Expect = 9.8e-90 Identity = 169/209 (80.86%), Postives = 186/209 (89.00%), Query Frame = 1
BLAST of Lsi02G016710 vs. NCBI nr
Match: gi|470143804|ref|XP_004307558.1| (PREDICTED: aquaporin TIP1-3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 333.6 bits (854), Expect = 3.1e-88 Identity = 165/208 (79.33%), Postives = 182/208 (87.50%), Query Frame = 1
BLAST of Lsi02G016710 vs. NCBI nr
Match: gi|404351587|dbj|BAM44345.1| (vacuolar aluminum transporter [Hydrangea macrophylla]) HSP 1 Score: 333.2 bits (853), Expect = 4.1e-88 Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |