Lsi02G014580 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G014580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transmembrane-like protein
Location	chr02 : 20301306 .. 20303823 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAGCCGTCGGCCCAACTCGAAATCGAAGATCCTGAACCCAGTCAAACATTTTGATTTTATTTCTTTGAGCACCTCCTTTCATCTCTGTTGAATCAAAGAAACGACGACTTTTTCCTCGACCTCCAGGCTCCGGTGAGATTTCAAGACTCTTCAACTTCACCAGTTTTCTGAGATTTCACTATCGATTCTGCATCGCCTTCTTCCTCCGCTGTTATTTTGTGCGTTTTGCGTTTTCTATTCCAGGTACACTCTCCTACTTTTGCTCTGAATTGTAGGGTTTCAATTGATACTTTTAATGGCTTCAGTTGCTGATTATTTGGGAGTTCGTTAGATTTTTATGTATATTCATTCTACATCTGATTGAGGGAAATAAGGATTTGTATATGGCGAGTAATTGTTTTCATTGGATTGAAATGAATTATTTAGGATTGAAGTTCTTGTTAGGTTTCGTCGTAAAGAAGAAGGAAAATTCTATCCCATTTCTCTCCTTCGATCTCTTCTCTTTCTCATTCTTTCTCTTCCTCTTACCCAGACCATATCCGCCGCCCTCTTCCTCTCCAGCGTTCCCTCCCTCTCTCATTAGTGAACGGCGGCCCATTTTAAACACACACGAACATATCTGAGATCCATGCCCACGCCCGCTGACGCACGAACGTTCGCCTCTCTACGAGTTGAGTAAACAGCGTAGAAGTTTAGTTGGTTTTAATGACCCCTGTTGTTTTATATGAGTTCAATTAAGTATGAAAATTTAGTAATACTCCCTAATTTAGGCTGAAATTTGGGGTCATTACATTGACAATCATGTGAAAATTATGTAATTTTCATCTTCCTCTTGATGTCTTTTTAATGTATTTGATTCTTGATTTCGAAGGTGGCTTGATTTACTTGAAATTTGAAGACTGCATTCTTGATATTCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGTATTGATGGAATTTTCTGTTTCGTAATTTAATTGAATGCTGTTTTTTATTATTTATTTTCATTGTGTGCAAAGTGTACTCATTTGGCTTTTGTTTGTTTCTGAAATTATTACATACAATATGGCTCCGGTGTGCCAACATGAGCATAACTACTCTTGAGGCGGTTCAAATTCCCATATAAGACCTGGTGTATAGGGTTCTTTATTGACCTGATTGATAGTGATGAATTGGTTTTAACAATCAAAGAAGATGTAATCCAATGGCATGAGGTCATGTATAATACTGATAGAATATAGAAAGAGGGAAAATCCGGCCGAAGGAATTATGAATACACTCCCATTGGCAAAGTCGATGGTGGGAGAAGATTTTACTAAAAATTGTGATTATTCCTTTTGTAGGAAGCTTGAAAGTTGAAAGTATATTAAATTTCCACAAAGAAAGTTTGTATCAAGAAATTTCTAACATATGGACCACTTTTCATGTAAAGAGTATTCACTGATAGTTTTGTGCTCTACCCAATTTTAGTCACTGTTAATGTAATTTTGGTTCGTAGATCTCATGCAACTGTTGTACTTGCTTGCTTCTGCCATCCTGTCCCTGGTCTTGGACATTCTAGTTCCTAGAGTTTATTTGTTATTTATTTTCTTCTTTTTCTTTACATAATGCCAAATGTATCCAGAAATCTAAAATGGAGTGTAAATCAAAGTTTTGTTATCGTTGAATATGACATCAGTAGAAGTGCCGTTGACTTATCCTGTCCAAGAAGTTTGATAAGCTGAGCAACATTTGCTTTGTTGTTGCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGTATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCACGTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCATTCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTGTAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTCGAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTACATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACTAGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAATTGATTACAGGCCAAC

mRNA sequence

CTAAAAGCCGTCGGCCCAACTCGAAATCGAAGATCCTGAACCCAGTCAAACATTTTGATTTTATTTCTTTGAGCACCTCCTTTCATCTCTGTTGAATCAAAGAAACGACGACTTTTTCCTCGACCTCCAGGCTCCGGTGAGATTTCAAGACTCTTCAACTTCACCAGTTTTCTGAGATTTCACTATCGATTCTGCATCGCCTTCTTCCTCCGCTGTTATTTTGTGCGTTTTGCGTTTTCTATTCCAGACCATATCCGCCGCCCTCTTCCTCTCCAGCGTTCCCTCCCTCTCTCATTAGTGAACGGCGGCCCATTTTAAACACACACGAACATATCTGAGATCCATGCCCACGCCCGCTGACGCACGAACGTTCGCCTCTCTACGAGTGGCTTGATTTACTTGAAATTTGAAGACTGCATTCTTGATATTCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGTATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCACGTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCATTCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTGTAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTCGAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTACATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACTAGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAATTGATTACAGGCCAAC

Coding sequence (CDS)

ATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAA

Protein sequence

MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY

Homology

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BLAST of Lsi02G014580 vs. Swiss-Prot
Match: TM230_MOUSE (Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 7   VRYSSLAP-DDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS LA  DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLASTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

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BLAST of Lsi02G014580 vs. Swiss-Prot
Match: TM230_CHICK (Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 7   VRYSSLAP-DDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS LA  DD  +D +  +  P          KIP+K+IALA+ L ++G+ L+ +   +
Sbjct: 17  VKYSKLASTDDGYIDLQFKKSPP----------KIPYKAIALAVVLFMIGTFLIIIGALL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LAGYISKGGTDRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

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BLAST of Lsi02G014580 vs. Swiss-Prot
Match: TM230_HUMAN (Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1


Query: 7   VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVL 66
           V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDDGY------IDLQFKKTPP---KIPYKAIALATVLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

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BLAST of Lsi02G014580 vs. Swiss-Prot
Match: TM230_PONAB (Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-13
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1


Query: 7   VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVL 66
           V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDDGY------IDLQFKKTPP---KIPYKAIALATGLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

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BLAST of Lsi02G014580 vs. Swiss-Prot
Match: TM230_RAT (Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-13
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 7   VRYSSLAP-DDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS L+  DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLSSTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

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BLAST of Lsi02G014580 vs. TrEMBL
Match: A0A0A0KXG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G637760 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.4e-55
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYS L  DDND+DSEG++ DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNVRYSPLTSDDNDIDSEGNQSDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

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BLAST of Lsi02G014580 vs. TrEMBL
Match: A0A061EGM6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_018661 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.2e-47
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDS-EGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLL 60
           M+SRR+VRYS LA D+ND D+ EG RYDPRF YTPKAFDKIPWKSIALA+ LL LGSLLL
Sbjct: 1   MSSRRHVRYSPLAGDENDYDANEGRRYDPRFDYTPKAFDKIPWKSIALAVILLCLGSLLL 60

Query: 61  FLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           FLS+F+LTGHM GEKSQAYGLL LG LTFLPGFYETRIAYY+WRGA GYRFASIPDY
Sbjct: 61  FLSFFILTGHMGGEKSQAYGLLILGILTFLPGFYETRIAYYSWRGAEGYRFASIPDY 117

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BLAST of Lsi02G014580 vs. TrEMBL
Match: M5WT10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013579mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.3e-44
Identity = 94/116 (81.03%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRR  RYS LA D+ND D  G   DPRF YTPK+FDKIPWKSI LALFLL LGSLLLF
Sbjct: 1   MASRRYARYSPLATDEND-DVYGKPNDPRFSYTPKSFDKIPWKSILLALFLLFLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYF+ TGHM G+ SQAYGLLALG LTFLPGFYETRIAYYAWRGA GYRFASIPDY
Sbjct: 61  LSYFIFTGHMGGDLSQAYGLLALGILTFLPGFYETRIAYYAWRGAKGYRFASIPDY 115

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BLAST of Lsi02G014580 vs. TrEMBL
Match: A0A067JT97_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19885 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEG-SRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLL 60
           MA+RR VRY+ L  DDND D  G SR+DPRF Y P A+D+IPWKSIALALFLL LGSLLL
Sbjct: 23  MAARRGVRYTPLPVDDNDYDGVGGSRHDPRFEYRPGAYDRIPWKSIALALFLLFLGSLLL 82

Query: 61  FLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           FLS+F+LTGHM G+KSQ YGLLALGFL FLPGFYETRIAYY+WRGA GYRFA+IP Y
Sbjct: 83  FLSFFILTGHMGGDKSQGYGLLALGFLAFLPGFYETRIAYYSWRGAKGYRFAAIPSY 139

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BLAST of Lsi02G014580 vs. TrEMBL
Match: A0A0J8CE30_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115650 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.8e-43
Identity = 90/124 (72.58%), Postives = 100/124 (80.65%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDD--------NDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLL 60
           MASRRNV+YS LA D+        ND   +G +YDPRF YTPK  DK+PWKSI LALFLL
Sbjct: 1   MASRRNVKYSRLATDEDDGGQIYSNDAHIKGRQYDPRFDYTPKCLDKVPWKSILLALFLL 60

Query: 61  LLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFAS 117
            LGSLLLFLS+F+LTGHM GE+SQ YGL ALG LTFLPGFYETRIAYY+WRGA GYRFA+
Sbjct: 61  FLGSLLLFLSFFILTGHMGGERSQGYGLFALGLLTFLPGFYETRIAYYSWRGAAGYRFAA 120

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BLAST of Lsi02G014580 vs. TAIR10
Match: AT3G29170.1 (AT3G29170.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-40
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLG 60
           MASRR+VRY+ L  D++D        E   +DPRF Y+PKAFD++PWKSIALA+FLL LG
Sbjct: 1   MASRRSVRYAQLPGDEDDEGYGNGVGERRDFDPRFDYSPKAFDRVPWKSIALAVFLLFLG 60

Query: 61  SLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPD 117
            LLL LS+F+  GHM G+ SQ Y LL LG LTFLPGFYETRIAYY+WRGA GYRFA+IP 
Sbjct: 61  CLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAIPS 120

[Close]

BLAST of Lsi02G014580 vs. TAIR10
Match: AT2G19350.1 (AT2G19350.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 41  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

[Close]

BLAST of Lsi02G014580 vs. TAIR10
Match: AT4G29850.1 (AT4G29850.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 41  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

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BLAST of Lsi02G014580 vs. NCBI nr
Match: gi|659118865|ref|XP_008459349.1| (PREDICTED: transmembrane protein 230 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-57
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNIRYSSLASDDNDVDSEGSRFDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: gi|449447392|ref|XP_004141452.1| (PREDICTED: transmembrane protein 230 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.8e-55
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYS L  DDND+DSEG++ DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNVRYSPLTSDDNDIDSEGNQSDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: gi|590650306|ref|XP_007032621.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-47
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDS-EGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLL 60
           M+SRR+VRYS LA D+ND D+ EG RYDPRF YTPKAFDKIPWKSIALA+ LL LGSLLL
Sbjct: 1   MSSRRHVRYSPLAGDENDYDANEGRRYDPRFDYTPKAFDKIPWKSIALAVILLCLGSLLL 60

Query: 61  FLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           FLS+F+LTGHM GEKSQAYGLL LG LTFLPGFYETRIAYY+WRGA GYRFASIPDY
Sbjct: 61  FLSFFILTGHMGGEKSQAYGLLILGILTFLPGFYETRIAYYSWRGAEGYRFASIPDY 117

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: gi|658035790|ref|XP_008353428.1| (PREDICTED: transmembrane protein 230-like [Malus domestica])

HSP 1 Score: 188.7 bits (478), Expect = 5.6e-45
Identity = 96/116 (82.76%), Postives = 101/116 (87.07%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYS LA DD+D+   GS  DPRF YTPK+FDKIPWKSI LALFLL LGSLLLF
Sbjct: 1   MASRRNVRYSPLATDDDDV--YGSPNDPRFDYTPKSFDKIPWKSIVLALFLLSLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYF+ TGHM GE +QAYGLLALG LTFLPGFYETRIAYYAWRGA GYRFASIPDY
Sbjct: 61  LSYFIFTGHMGGELAQAYGLLALGXLTFLPGFYETRIAYYAWRGAXGYRFASIPDY 114

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: gi|645249579|ref|XP_008230813.1| (PREDICTED: transmembrane protein 230 [Prunus mume])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 94/116 (81.03%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNV YS LA D+ND D  G   DPRF YTPK+FDKIPWKSI LALFLL LGSLLLF
Sbjct: 1   MASRRNVHYSPLATDEND-DVYGKPNDPRFSYTPKSFDKIPWKSILLALFLLFLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYF+ TGHM G+ SQAYGLLALG LTFLPGFYETRIAYYAWRG  GYRFASIPDY
Sbjct: 61  LSYFIFTGHMGGDLSQAYGLLALGILTFLPGFYETRIAYYAWRGVKGYRFASIPDY 115

The following BLAST results are available for this feature:

BLAST of Lsi02G014580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TM230_MOUSE	1.9e-13	41.07	Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1	[more]
TM230_CHICK	1.9e-13	40.18	Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1	[more]
TM230_HUMAN	1.9e-13	41.44	Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1	[more]
TM230_PONAB	3.3e-13	41.44	Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1	[more]
TM230_RAT	4.3e-13	40.18	Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=1 SV=1	[more]

BLAST of Lsi02G014580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG1_CUCSA	5.4e-55	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G637760 PE=4 SV=1	[more]
A0A061EGM6_THECC	3.2e-47	82.91	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_018661 PE=4 SV=1	[more]
M5WT10_PRUPE	4.3e-44	81.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013579mg PE=4 SV=1	[more]
A0A067JT97_JATCU	1.3e-43	76.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19885 PE=4 SV=1	[more]
A0A0J8CE30_BETVU	4.8e-43	72.58	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115650 PE=4 S...	[more]

BLAST of Lsi02G014580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29170.1	5.8e-40	65.29	Eukaryotic protein of unknown function (DUF872)	[more]
AT2G19350.1	1.5e-11	43.24	Eukaryotic protein of unknown function (DUF872)	[more]
AT4G29850.1	2.5e-11	43.24	Eukaryotic protein of unknown function (DUF872)	[more]

BLAST of Lsi02G014580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118865\|ref\|XP_008459349.1\|	4.9e-57	95.69	PREDICTED: transmembrane protein 230 [Cucumis melo]	[more]
gi\|449447392\|ref\|XP_004141452.1\|	7.8e-55	93.10	PREDICTED: transmembrane protein 230 [Cucumis sativus]	[more]
gi\|590650306\|ref\|XP_007032621.1\|	4.6e-47	82.91	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|658035790\|ref\|XP_008353428.1\|	5.6e-45	82.76	PREDICTED: transmembrane protein 230-like [Malus domestica]	[more]
gi\|645249579\|ref\|XP_008230813.1\|	2.8e-44	81.03	PREDICTED: transmembrane protein 230 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008590	DUF872_TM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G014580.1	Lsi02G014580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Protein of unknown function DUF872, transmembrane	PFAM	PF05915	DUF872	coord: 23..116 score: 1.0
None	No IPR available	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 1..116 score: 1.5
None	No IPR available	PANTHER	PTHR15664:SF3	SUBFAMILY NOT NAMED	coord: 1..116 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G014580	Csa5G637760	Cucumber (Chinese Long) v2	culsiB348
Lsi02G014580	CSPI05G29160	Wild cucumber (PI 183967)	cpilsiB352
Lsi02G014580	Cucsa.158070	Cucumber (Gy14) v1	cgylsiB251
Lsi02G014580	CmaCh04G027840	Cucurbita maxima (Rimu)	cmalsiB651
Lsi02G014580	CmoCh15G002610	Cucurbita moschata (Rifu)	cmolsiB261
Lsi02G014580	Cla010306	Watermelon (97103) v1	lsiwmB170
Lsi02G014580	MELO3C022011	Melon (DHL92) v3.5.1	lsimeB162
Lsi02G014580	ClCG09G017950	Watermelon (Charleston Gray)	lsiwcgB155
Lsi02G014580	MELO3C022011.2	Melon (DHL92) v3.6.1	lsimedB171
Lsi02G014580	Cla97C09G179340	Watermelon (97103) v2	lsiwmbB208
Lsi02G014580	Bhi06G000302	Wax gourd	lsiwgoB207
Lsi02G014580	Cp4.1LG13g08160	Cucurbita pepo (Zucchini)	cpelsiB141
Lsi02G014580	CsGy5G028570	Cucumber (Gy14) v2	cgyblsiB319
Lsi02G014580	CsGy0G000340	Cucumber (Gy14) v2	cgyblsiB000
Lsi02G014580	Carg04363	Silver-seed gourd	carlsiB623
Lsi02G014580	CsaV3_5G038280	Cucumber (Chinese Long) v3	cuclsiB371

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None