Lsi02G011490 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G011490
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr02 : 13626468 .. 13626935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGCAACGCCACCTTACAATAAAATCCATCTTTTTTAGACCAAAAGGACCATCCATTTGGACCACAAACATCATCAAATCATACTTCGACGAAGGCTTAACCAAAGAAGCTCGTAACCTGTTTGATGAAATGCCTGAAAGGGATGTGGTTGCCTGGACTACTATGATTGTTATCTTTACTTCTTGCAATCACTACCCTCAAGCGTGGGCTATGTTCTGTGAGATGTTAAGGAGTCAAATTGACCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCATAGGCACGAAGGCTCTTTCATGTGGGGATTTGGCTCATAGTTTGGCCACAAAGCACAGTATTGACGGGTCGATGTACATCTGGAAAGCACTCTTGCACATGTATGCTACTTGCTGTGCTACCATGGGTGATGCATTGACTGTGTTTAATGATATACCTCTGAAGACTATTGTGTCATAG

mRNA sequence

ATGGATAAGCAACGCCACCTTACAATAAAATCCATCTTTTTTAGACCAAAAGGACCATCCATTTGGACCACAAACATCATCAAATCATACTTCGACGAAGGCTTAACCAAAGAAGCTCGTAACCTGTTTGATGAAATGCCTGAAAGGGATGTGGTTGCCTGGACTACTATGATTGTTATCTTTACTTCTTGCAATCACTACCCTCAAGCGTGGGCTATGTTCTGTGAGATGTTAAGGAGTCAAATTGACCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCATAGGCACGAAGGCTCTTTCATGTGGGGATTTGGCTCATAGTTTGGCCACAAAGCACAGTATTGACGGGTCGATGTACATCTGGAAAGCACTCTTGCACATGTATGCTACTTGCTGTGCTACCATGGGTGATGCATTGACTGTGTTTAATGATATACCTCTGAAGACTATTGTGTCATAG

Coding sequence (CDS)

ATGGATAAGCAACGCCACCTTACAATAAAATCCATCTTTTTTAGACCAAAAGGACCATCCATTTGGACCACAAACATCATCAAATCATACTTCGACGAAGGCTTAACCAAAGAAGCTCGTAACCTGTTTGATGAAATGCCTGAAAGGGATGTGGTTGCCTGGACTACTATGATTGTTATCTTTACTTCTTGCAATCACTACCCTCAAGCGTGGGCTATGTTCTGTGAGATGTTAAGGAGTCAAATTGACCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCATAGGCACGAAGGCTCTTTCATGTGGGGATTTGGCTCATAGTTTGGCCACAAAGCACAGTATTGACGGGTCGATGTACATCTGGAAAGCACTCTTGCACATGTATGCTACTTGCTGTGCTACCATGGGTGATGCATTGACTGTGTTTAATGATATACCTCTGAAGACTATTGTGTCATAG

Protein sequence

MDKQRHLTIKSIFFRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALTVFNDIPLKTIVS
Homology
[Close]
BLAST of Lsi02G011490 vs. Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 69/142 (48.59%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           ++PK   I  TN+I SYF++GL +EAR+LFDEMP+RDVVAWT MI  + S N+  +AW  
Sbjct: 39  YKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWEC 98

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           F EM++    PN FT+SSVLK+C   K L+ G L H +  K  ++GS+Y+  A+++MYAT
Sbjct: 99  FHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYAT 158

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           C  TM  A  +F DI +K  V+
Sbjct: 159 CSVTMEAACLIFRDIKVKNDVT 180

[Close]
BLAST of Lsi02G011490 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-19
Identity = 48/132 (36.36%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 24  TNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQID 83
           + ++  Y   G +++A N+  ++P RDVV+WT MI   +S  H  +A     EM++  ++
Sbjct: 424 STLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVE 483

Query: 84  PNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALT 143
           PN FT SS LKAC  +++L  G   HS+A K+    ++++  AL+HMYA  C  + +A  
Sbjct: 484 PNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAK-CGFVSEAFR 543

Query: 144 VFNDIPLKTIVS 156
           VF+ +P K +VS
Sbjct: 544 VFDSMPEKNLVS 554

[Close]
BLAST of Lsi02G011490 vs. Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1 

Query: 26  IIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQIDPN 85
           +I  Y  +G  K AR LFD + +RDVV+WT MI  F+ C ++P A  +F EM R  +  N
Sbjct: 54  LIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKAN 113

Query: 86  AFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALTVF 145
            FT  SVLK+C     L  G   H    K +  G++ +  ALL +YA  C  M +A   F
Sbjct: 114 QFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYAR-CGKMEEARLQF 173

Query: 146 NDIPLKTIVS 156
           + +  + +VS
Sbjct: 174 DSMKERDLVS 182

[Close]
BLAST of Lsi02G011490 vs. Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 37  KEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQIDPNAFTMSSVLKAC 96
           ++AR + DEMPE++VV+WT MI  ++   H  +A  +F EM+RS   PN FT ++VL +C
Sbjct: 104 EDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSC 163

Query: 97  IGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALTVFNDIPLKTIVS 156
           I    L  G   H L  K + D  +++  +LL MYA     + +A  +F  +P + +VS
Sbjct: 164 IRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAK-AGQIKEAREIFECLPERDVVS 221

[Close]
BLAST of Lsi02G011490 vs. Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 48/133 (36.09%), Postives = 67/133 (50.38%), Query Frame = 1 

Query: 23  TTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQI 82
           +  I+ SY   G    A  LFDEMP+RD V+W TMI  +TSC     AW +F  M RS  
Sbjct: 38  SNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGS 97

Query: 83  DPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDAL 142
           D + ++ S +LK     K    G+  H L  K   + ++Y+  +L+ MYA  C  + DA 
Sbjct: 98  DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAK-CERVEDAF 157

Query: 143 TVFNDIPLKTIVS 156
             F +I     VS
Sbjct: 158 EAFKEISEPNSVS 169

[Close]
BLAST of Lsi02G011490 vs. TrEMBL
Match: A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-56
Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F P+GPS+W TN+IKSYFD+GLT+EA NLF+E+PERDVV WT MIV FTSCNHY QAW M
Sbjct: 37  FTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTM 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           F EMLRS++ PNAFTMSSVLKAC G KALSCG LAHSLATKH ID S+Y+  ALL MYA 
Sbjct: 97  FSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAA 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
            CATM DAL+VFNDIPLKT VS
Sbjct: 157 SCATMDDALSVFNDIPLKTAVS 178

[Close]
BLAST of Lsi02G011490 vs. TrEMBL
Match: F6I4U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00870 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-44
Identity = 88/142 (61.97%), Postives = 104/142 (73.24%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F PKGPS+  T +IKSYF +GL  EAR LFDEMPERDVVAWT MI  +TSCN++  AW +
Sbjct: 37  FIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMV 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           FCEM+  ++DPNAFT+SSVLKAC G K LS G L H LA KH +DG +Y+  AL+ MYAT
Sbjct: 97  FCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYAT 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           CC +M DA  VF  I LK  VS
Sbjct: 157 CCVSMDDACMVFRGIHLKNEVS 178

[Close]
BLAST of Lsi02G011490 vs. TrEMBL
Match: M5W7M0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026465mg PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-43
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = 1 

Query: 17  KGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCE 76
           KG  +  TN+IKS F+ GL KEAR LFDEMPERDVVAWT +I  +TSC+H+  AWA+FCE
Sbjct: 25  KGFCVIATNLIKSCFERGLIKEARKLFDEMPERDVVAWTAIIAGYTSCSHHSHAWALFCE 84

Query: 77  MLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCA 136
           M+R++++PNAFT SSVLKAC G KALSCG L H  A K  + GS+Y+  AL+ MYATCCA
Sbjct: 85  MVRNEMEPNAFTFSSVLKACKGMKALSCGALVHGGAIKQGMQGSIYVENALMDMYATCCA 144

Query: 137 TMGDALTVFNDIPLKTIVS 156
           +M DA  VFNDI  K  VS
Sbjct: 145 SMDDACMVFNDIHEKNDVS 163

[Close]
BLAST of Lsi02G011490 vs. TrEMBL
Match: A0A067GPR6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007288mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 1 

Query: 16  PKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFC 75
           PKGPSI  TN+IKSYFDEGL +EAR LFDEMPERDVV+WT MI  +TS N + QAW +F 
Sbjct: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101

Query: 76  EMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCC 135
           EM+R++++PNAFT+SSVLKAC G K+LS   L H +A K  ++GS+Y+  +L+ +YATCC
Sbjct: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161

Query: 136 ATMGDALTVFNDIPLKTIVS 156
            +M +A  VFND+  K  VS
Sbjct: 162 ISMDNARLVFNDMKWKNDVS 181

[Close]
BLAST of Lsi02G011490 vs. TrEMBL
Match: V4V4G6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000630mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 1 

Query: 16  PKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFC 75
           PKGPSI  TN+IKSYFDEGL +EAR LFDEMPERDVV+WT MI  +TS N + QAW +F 
Sbjct: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101

Query: 76  EMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCC 135
           EM+R++++PNAFT+SSVLKAC G K+LS   L H +A K  ++GS+Y+  +L+ +YATCC
Sbjct: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161

Query: 136 ATMGDALTVFNDIPLKTIVS 156
            +M +A  VFND+  K  VS
Sbjct: 162 ISMDNARLVFNDMKWKNDVS 181

[Close]
BLAST of Lsi02G011490 vs. TAIR10
Match: AT1G56570.1 (AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-35
Identity = 69/142 (48.59%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           ++PK   I  TN+I SYF++GL +EAR+LFDEMP+RDVVAWT MI  + S N+  +AW  
Sbjct: 39  YKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWEC 98

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           F EM++    PN FT+SSVLK+C   K L+ G L H +  K  ++GS+Y+  A+++MYAT
Sbjct: 99  FHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYAT 158

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           C  TM  A  +F DI +K  V+
Sbjct: 159 CSVTMEAACLIFRDIKVKNDVT 180

[Close]
BLAST of Lsi02G011490 vs. TAIR10
Match: AT4G18520.1 (AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-20
Identity = 48/132 (36.36%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 24  TNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQID 83
           + ++  Y   G +++A N+  ++P RDVV+WT MI   +S  H  +A     EM++  ++
Sbjct: 424 STLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVE 483

Query: 84  PNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALT 143
           PN FT SS LKAC  +++L  G   HS+A K+    ++++  AL+HMYA  C  + +A  
Sbjct: 484 PNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAK-CGFVSEAFR 543

Query: 144 VFNDIPLKTIVS 156
           VF+ +P K +VS
Sbjct: 544 VFDSMPEKNLVS 554

[Close]
BLAST of Lsi02G011490 vs. TAIR10
Match: AT3G20730.1 (AT3G20730.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-18
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1 

Query: 26  IIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQIDPN 85
           +I  Y  +G  K AR LFD + +RDVV+WT MI  F+ C ++P A  +F EM R  +  N
Sbjct: 53  LIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKAN 112

Query: 86  AFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALTVF 145
            FT  SVLK+C     L  G   H    K +  G++ +  ALL +YA  C  M +A   F
Sbjct: 113 QFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYAR-CGKMEEARLQF 172

Query: 146 NDIPLKTIVS 156
           + +  + +VS
Sbjct: 173 DSMKERDLVS 181

[Close]
BLAST of Lsi02G011490 vs. TAIR10
Match: AT3G13770.1 (AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-18
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 37  KEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQIDPNAFTMSSVLKAC 96
           ++AR + DEMPE++VV+WT MI  ++   H  +A  +F EM+RS   PN FT ++VL +C
Sbjct: 104 EDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSC 163

Query: 97  IGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDALTVFNDIPLKTIVS 156
           I    L  G   H L  K + D  +++  +LL MYA     + +A  +F  +P + +VS
Sbjct: 164 IRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAK-AGQIKEAREIFECLPERDVVS 221

[Close]
BLAST of Lsi02G011490 vs. TAIR10
Match: AT3G25970.1 (AT3G25970.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-18
Identity = 48/133 (36.09%), Postives = 67/133 (50.38%), Query Frame = 1 

Query: 23  TTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAMFCEMLRSQI 82
           +  I+ SY   G    A  LFDEMP+RD V+W TMI  +TSC     AW +F  M RS  
Sbjct: 38  SNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGS 97

Query: 83  DPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYATCCATMGDAL 142
           D + ++ S +LK     K    G+  H L  K   + ++Y+  +L+ MYA  C  + DA 
Sbjct: 98  DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAK-CERVEDAF 157

Query: 143 TVFNDIPLKTIVS 156
             F +I     VS
Sbjct: 158 EAFKEISEPNSVS 169

[Close]
BLAST of Lsi02G011490 vs. NCBI nr
Match: gi|778662137|ref|XP_011659402.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-56
Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F P+GPS+W TN+IKSYFD+GLT+EA NLF+E+PERDVV WT MIV FTSCNHY QAW M
Sbjct: 37  FTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTM 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           F EMLRS++ PNAFTMSSVLKAC G KALSCG LAHSLATKH ID S+Y+  ALL MYA 
Sbjct: 97  FSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAA 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
            CATM DAL+VFNDIPLKT VS
Sbjct: 157 SCATMDDALSVFNDIPLKTAVS 178

[Close]
BLAST of Lsi02G011490 vs. NCBI nr
Match: gi|659099292|ref|XP_008450526.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F PKGPS W TN+IKSYFD+GLT+EA NLF+E+PERDVV WT MIV FTSCNHYPQAW M
Sbjct: 37  FTPKGPSFWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYPQAWTM 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           F EMLRS++ PNAFTMSSVLKAC G KALSCG LAHSLATK  ID S+Y+  ALL MYA 
Sbjct: 97  FSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKLGIDRSVYVQNALLDMYAA 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
            CATM DAL+VFNDIPLKT VS
Sbjct: 157 SCATMDDALSVFNDIPLKTAVS 178

[Close]
BLAST of Lsi02G011490 vs. NCBI nr
Match: gi|694419390|ref|XP_009337652.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Pyrus x bretschneideri])

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 89/142 (62.68%), Postives = 108/142 (76.06%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F PK P+I  TN+IKS+FD+GL KEAR +FDEMPERDV+AWT MI  +TSC+H+  AWAM
Sbjct: 39  FSPKIPNILATNLIKSHFDKGLIKEARQVFDEMPERDVIAWTAMIAGYTSCSHHNHAWAM 98

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           FCEM+R+ ++PNAFT SSVLKAC G  ALSCG L H  A K  + GS+Y+  AL+ MYAT
Sbjct: 99  FCEMVRNGMEPNAFTFSSVLKACKGMGALSCGALVHGSAVKRGMQGSIYVENALMDMYAT 158

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           CCA+M DA  VF+DI  K  VS
Sbjct: 159 CCASMEDACVVFDDICEKNDVS 180

[Close]
BLAST of Lsi02G011490 vs. NCBI nr
Match: gi|645221981|ref|XP_008246376.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Prunus mume])

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F PK P+I  TN+IKS F+ GL KEAR LFDEMPERDVVAWT MI  +TSC+H+  AWA+
Sbjct: 37  FLPKRPNILATNLIKSCFERGLIKEARKLFDEMPERDVVAWTAMIAGYTSCSHHSHAWAL 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           FCEM+R++++PNAFT SSVLKAC G K LSCG L H  A K  + GS+Y+  AL+ MYAT
Sbjct: 97  FCEMVRNEMEPNAFTFSSVLKACKGMKTLSCGALVHGGAIKQGMQGSIYVENALMDMYAT 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           CCA+M  A  VFNDI  K  VS
Sbjct: 157 CCASMDGACMVFNDIHEKNDVS 178

[Close]
BLAST of Lsi02G011490 vs. NCBI nr
Match: gi|225450537|ref|XP_002277327.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 isoform X2 [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 6.3e-44
Identity = 88/142 (61.97%), Postives = 104/142 (73.24%), Query Frame = 1 

Query: 14  FRPKGPSIWTTNIIKSYFDEGLTKEARNLFDEMPERDVVAWTTMIVIFTSCNHYPQAWAM 73
           F PKGPS+  T +IKSYF +GL  EAR LFDEMPERDVVAWT MI  +TSCN++  AW +
Sbjct: 37  FIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMV 96

Query: 74  FCEMLRSQIDPNAFTMSSVLKACIGTKALSCGDLAHSLATKHSIDGSMYIWKALLHMYAT 133
           FCEM+  ++DPNAFT+SSVLKAC G K LS G L H LA KH +DG +Y+  AL+ MYAT
Sbjct: 97  FCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYAT 156

Query: 134 CCATMGDALTVFNDIPLKTIVS 156
           CC +M DA  VF  I LK  VS
Sbjct: 157 CCVSMDDACMVFRGIHLKNEVS 178

The following BLAST results are available for this feature:
BLAST of Lsi02G011490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR83_ARATH3.5e-3448.59Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th... [more]
PP319_ARATH9.2e-1936.36Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN... [more]
PP244_ARATH8.6e-1737.69Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN... [more]
PP227_ARATH8.6e-1736.97Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
PP255_ARATH1.5e-1636.09Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis th... [more]
BLAST of Lsi02G011490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW37_CUCSA1.0e-5676.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1[more]
F6I4U5_VITVI4.4e-4461.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00870 PE=4 SV=... [more]
M5W7M0_PRUPE6.4e-4362.59Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026465mg PE=4 S... [more]
A0A067GPR6_CITSI3.5e-4159.29Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007288mg PE=4 SV=1[more]
V4V4G6_9ROSI3.5e-4159.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000630mg PE=4 SV=1[more]
BLAST of Lsi02G011490 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56570.12.0e-3548.59 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18520.15.2e-2036.36 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G20730.14.9e-1837.69 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G13770.14.9e-1836.97 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G25970.18.3e-1836.09 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Lsi02G011490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778662137|ref|XP_011659402.1|1.5e-5676.06PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum... [more]
gi|659099292|ref|XP_008450526.1|1.9e-5676.76PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum... [more]
gi|694419390|ref|XP_009337652.1|1.7e-4462.68PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Pyrus... [more]
gi|645221981|ref|XP_008246376.1|3.7e-4462.68PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Prunu... [more]
gi|225450537|ref|XP_002277327.1|6.3e-4461.97PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 isofor... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010033 response to organic substance
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011490.1Lsi02G011490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 50..96
score: 6.4
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 26..52
score: 3.3E-4coord: 52..86
score: 7.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 19..49
score: 6.686coord: 120..155
score: 5.645coord: 50..84
score: 9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 19..155
score: 5.7
NoneNo IPR availablePANTHERPTHR24015:SF909SUBFAMILY NOT NAMEDcoord: 19..155
score: 5.7