Lsi02G011030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G011030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MADS-box transcription factor family protein
Location	chr02 : 12570648 .. 12571463 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGGTGACTCCCTCTCTGAAATTGTAGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

mRNA sequence

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

Coding sequence (CDS)

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

Protein sequence

PLIKIMGPPSGKYVDSVSEFQRDNLTMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSSIHLAGNNQCPPSLSNLPGSHSVAMGSGDSECGLGFLAGNYHSVAMGITGDSEFGLGFQ

Homology

[Close]

BLAST of Lsi02G011030 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-27
Identity = 65/169 (38.46%), Postives = 106/169 (62.72%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KK+ GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LC AE+AI++FS   K++S
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 87  FGHPNVDALLDRFLTGNFVPP--------KPAEAYLPLAELNRDFSEAEAEFEIEKRRAA 146
           FGHPNVD+++DRF+  N +PP        +       + +LN   ++  ++ E EK++  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 147 E--RLRNTDRF---WWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
           E  ++R   +    WW+DP+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Lsi02G011030 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.5e-24
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           K+++GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LC AEI I++FS   K +SF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAY--LPLA--ELNRDFSEAEAEFEIEKRRA------ 147
           GHP+V+++LDR+++ N +    ++     P A  ELN   +   +E E EK++       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 148 -AERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
             E +R +   WW+ P+E M + +L+  + +L ELR  V   +  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASF 224

[Close]

BLAST of Lsi02G011030 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KKTLGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA+++FS  GK++S
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 87  FGHPNVDALLDRF----LTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 146
           FGHPNVD LLD F    +  N      +   L +  LN+ ++E +AE E E++    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 147 ------NTDRFWWDDPLE 155
                 N + +W   PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

[Close]

BLAST of Lsi02G011030 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.5e-21
Identity = 64/161 (39.75%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           +K LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI++FS +GK YSF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 88  GHPNVDALLD----RFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAA----- 147
           GHPNV+ LLD    R +  N      +   L +  LN   +E  AE E E+         
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 148 ERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERL 180
           ER       WW +    + + +    +  L  L+  V E++
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Lsi02G011030 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 55/170 (32.35%), Postives = 93/170 (54.71%), Query Frame = 1


Query: 31  LGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSFGHP 90
           +GRRKI+++ ++  +T+QVTFSKRR GLF KA+EL+ LC+AE+ I++FS  GK +S+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 91  NVDALLDRFL-------------TGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRR- 150
           N+D++ +RF+             +GN+ P         L  L+        E E EK R 
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRP--------KLKRLSERLDLLNQEVEAEKERG 120

Query: 151 --AAERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPA 185
             + E+L +     + + +E + +DEL  ++  L  +   +  ++    A
Sbjct: 121 EKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of Lsi02G011030 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.4e-68
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.7e-59
Identity = 127/221 (57.47%), Postives = 163/221 (73.76%), Query Frame = 1


Query: 23  DNLTMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNG 82
           + + MKKTLGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLC AE+AI++FS N 
Sbjct: 5   NTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 64

Query: 83  KIYSFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 142
           K++ FGHP+VD LLDR+LTGN  PPKPAE+Y+P+AE NRDF++   EFE EK+RAAE +R
Sbjct: 65  KLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIR 124

Query: 143 NTD------RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAG 202
             +       FWW + +E ++++ELK FRS+L++LRA VAER+EK  A+R+G P   L  
Sbjct: 125 AAEDSRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPL--LPA 184

Query: 203 NLQWPQP---SSIHLAGNNQ--CPPSLSNLPGSHSVAMGSG 233
               PQP   SS HL GN+Q   PP+  +L G+  VA G G
Sbjct: 185 LPPPPQPMTSSSFHLIGNHQELPPPTAFHLAGNQRVATGLG 223

[Close]

BLAST of Lsi02G011030 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.5e-55
Identity = 115/160 (71.88%), Postives = 132/160 (82.50%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L  AEIAIL+FSS  KIY+
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVD L+DRFLT NFVPPKP EAYLPL ELNRD  +  AEFE EKRR AER+R T  
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRR-AERMRKTGG 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMR 187
           FWWD+ +E M I++LK FRSSL+ELR  VAER+E+  A+R
Sbjct: 121 FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVR 159

[Close]

BLAST of Lsi02G011030 vs. TrEMBL
Match: W9QW40_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002949 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 88/192 (45.83%), Postives = 122/192 (63.54%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           KKT GR++IEIKKLE  S +QVTFSKRR+GLF KAAELSVLC +E+A L+FS NGK+++F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFRKAAELSVLCGSEVAALVFSPNGKLFTF 70

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAYLP------LAELNRDFSEAEAEFEIEKRRAAERL 147
           GHP+VD+++ R+  G    P  A +           E NRD+ EA  E E EK R AE  
Sbjct: 71  GHPSVDSVVLRYAHGTNTAPAAAASTSTNVVTNVSEEFNRDYVEAVKELEAEKTRLAEEK 130

Query: 148 RNT----DRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGN 207
           +      ++FWWD+ +E M ++EL+   ++L+ELR  VA R++   A    + +  LAG 
Sbjct: 131 KKAKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQGLKA-APPENATSLAGV 190

Query: 208 LQWPQPSSIHLA 210
           +   QP+S  LA
Sbjct: 191 VPL-QPASFFLA 200

[Close]

BLAST of Lsi02G011030 vs. TrEMBL
Match: W9QWE0_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.6e-32
Identity = 86/190 (45.26%), Postives = 120/190 (63.16%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           KKT GR++IEIKKLE  S +QVTFSKRR+GLF KAAELSVLC +E+A L+FS N K+++F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNDKLFAF 70

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAYLP------LAELNRDFSEAEAEFEIEKRRAAERL 147
           GHP+VD+++ R+  G       A +           E NRDF EA  E E EK R AE  
Sbjct: 71  GHPSVDSVVLRYAHGTNTAAAAAASTSTNVVTHVSEEFNRDFVEAVKELEAEKTRLAEEK 130

Query: 148 RNT----DRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGN 207
           +      ++FWWD+ +E M ++EL+   ++L+ELR  VA R+++  A    + +  LAG 
Sbjct: 131 KKAKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQELKA-APPENATSLAGV 190

[Close]

BLAST of Lsi02G011030 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28
Identity = 65/169 (38.46%), Postives = 106/169 (62.72%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KK+ GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LC AE+AI++FS   K++S
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 87  FGHPNVDALLDRFLTGNFVPP--------KPAEAYLPLAELNRDFSEAEAEFEIEKRRAA 146
           FGHPNVD+++DRF+  N +PP        +       + +LN   ++  ++ E EK++  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 147 E--RLRNTDRF---WWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
           E  ++R   +    WW+DP+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Lsi02G011030 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 112.1 bits (279), Expect = 5.3e-25
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           K+++GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LC AEI I++FS   K +SF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAY--LPLA--ELNRDFSEAEAEFEIEKRRA------ 147
           GHP+V+++LDR+++ N +    ++     P A  ELN   +   +E E EK++       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 148 -AERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
             E +R +   WW+ P+E M + +L+  + +L ELR  V   +  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASF 224

[Close]

BLAST of Lsi02G011030 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-25
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KKTLGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA+++FS  GK++S
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 87  FGHPNVDALLDRF----LTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 146
           FGHPNVD LLD F    +  N      +   L +  LN+ ++E +AE E E++    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 147 ------NTDRFWWDDPLE 155
                 N + +W   PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

[Close]

BLAST of Lsi02G011030 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 64/161 (39.75%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           +K LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI++FS +GK YSF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 88  GHPNVDALLD----RFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAA----- 147
           GHPNV+ LLD    R +  N      +   L +  LN   +E  AE E E+         
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 148 ERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERL 180
           ER       WW +    + + +    +  L  L+  V E++
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Lsi02G011030 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-21
Identity = 68/177 (38.42%), Postives = 101/177 (57.06%), Query Frame = 1


Query: 26  TMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIY 85
           T K T GR+KIEIKK+E+++ +QVTFSKRR GLF K+AELSVL  A+IA++ FS   +IY
Sbjct: 42  TPKTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIY 101

Query: 86  SFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 145
            FGH  VDAL+D++L  +   P   E Y             +   + E RR         
Sbjct: 102 RFGH--VDALIDKYLRKS---PVKLEGY-----------SGDNAADEESRRP-------- 161

Query: 146 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMG-DPSIDLAGNLQWP 202
             WW+ P+E +  +EL+ + ++L  LR N+ +++     + MG D ++D+     WP
Sbjct: 162 --WWERPVESVPEEELEEYMAALSMLRENIGKKI-----VAMGNDRTVDMVP--AWP 185

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 2.3e-78
Identity = 158/205 (77.07%), Postives = 177/205 (86.34%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKL+KKSTQQVTFSKRRAGLFNKAAELS+LC AEIA+L+FSS GKIY+
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 87  FGHPNVDALLDRFLTGN-FVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 146
           FGHPNVDALLDRFLTGN  VPPKPAEAYLP+AELNRD S+AEAEFEIEKRRAAER RN++
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 147 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSS 206
           RFWWD+PLE MKIDELK FRSSL+ELRANV ERLEK        PSID+A ++QWP+ SS
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 207 IHL-AGNNQCPPSLSNLPGSHSVAM 230
           I L AGNN C PS  ++  + SVAM
Sbjct: 181 IQLAAGNNHCLPSF-HMAENRSVAM 204

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: gi|449443690|ref|XP_004139610.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 6.3e-68
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: gi|659133060|ref|XP_008466532.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 9.7e-61
Identity = 129/224 (57.59%), Postives = 162/224 (72.32%), Query Frame = 1


Query: 25  LTMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKI 84
           + MKKTLGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLC AE+AI++FS N K+
Sbjct: 7   IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKV 66

Query: 85  YSFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNT 144
           + FGHP+VD LLDR+LTGN  PPKPAE+Y+P+AE NRDF++   EFE EK+RAAE +R  
Sbjct: 67  FCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRAA 126

Query: 145 D------RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNL 204
           +       FWW +  E M+++ELK FRS+L++LRA VAER+EK  A+R+G P +      
Sbjct: 127 EDSRKNGGFWWQEAAEGMRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPP 186

Query: 205 QWPQP--------SSIHLAGNNQ--CPPSLSNLPGSHSVAMGSG 233
             PQP        SS HLAGN+Q   PP   +L G+H VA G G
Sbjct: 187 PQPQPQPQPMTSSSSFHLAGNHQQLPPPRAFHLAGNHRVATGLG 230

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 5.3e-59
Identity = 127/221 (57.47%), Postives = 163/221 (73.76%), Query Frame = 1


Query: 23  DNLTMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNG 82
           + + MKKTLGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLC AE+AI++FS N 
Sbjct: 5   NTIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPND 64

Query: 83  KIYSFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 142
           K++ FGHP+VD LLDR+LTGN  PPKPAE+Y+P+AE NRDF++   EFE EK+RAAE +R
Sbjct: 65  KLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIR 124

Query: 143 NTD------RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAG 202
             +       FWW + +E ++++ELK FRS+L++LRA VAER+EK  A+R+G P   L  
Sbjct: 125 AAEDSRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPL--LPA 184

Query: 203 NLQWPQP---SSIHLAGNNQ--CPPSLSNLPGSHSVAMGSG 233
               PQP   SS HL GN+Q   PP+  +L G+  VA G G
Sbjct: 185 LPPPPQPMTSSSFHLIGNHQELPPPTAFHLAGNQRVATGLG 223

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 9.1e-59
Identity = 127/217 (58.53%), Postives = 161/217 (74.19%), Query Frame = 1


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKKTLGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLC AE+AI++FS N K++ 
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD- 146
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+AE NRDF++   EFE EK+RAAE +R  + 
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 147 -----RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQW 206
                 FWW + +E ++++ELK FRS+L++LRA VAER+EK  A+R+G P   L      
Sbjct: 121 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPL--LPALPPP 180

Query: 207 PQP---SSIHLAGNNQ--CPPSLSNLPGSHSVAMGSG 233
           PQP   SS HL GN+Q   PP+  +L G+  VA G G
Sbjct: 181 PQPMTSSSFHLIGNHQELPPPTAFHLAGNQRVATGLG 215

The following BLAST results are available for this feature:

BLAST of Lsi02G011030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL62_ARATH	2.4e-27	38.46	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1	[more]
AGL61_ARATH	9.5e-24	39.76	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1	[more]
AGL23_ARATH	1.2e-23	45.65	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1	[more]
AGL28_ARATH	7.5e-21	39.75	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1	[more]
AGL29_ARATH	1.3e-17	32.35	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]

BLAST of Lsi02G011030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW53_CUCSA	4.4e-68	72.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1	[more]
A0A0A0LE01_CUCSA	3.7e-59	57.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1	[more]
A0A0A0LLS2_CUCSA	5.5e-55	71.88	Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1	[more]
W9QW40_9ROSA	1.0e-32	45.83	Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002949 PE=4 SV=1	[more]
W9QWE0_9ROSA	8.6e-32	45.26	Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1	[more]

BLAST of Lsi02G011030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	1.4e-28	38.46	AGAMOUS-like 62	[more]
AT2G24840.1	5.3e-25	39.76	AGAMOUS-like 61	[more]
AT1G65360.1	7.0e-25	45.65	AGAMOUS-like 23	[more]
AT1G01530.1	4.2e-22	39.75	AGAMOUS-like 28	[more]
AT1G17310.1	3.6e-21	38.42	MADS-box transcription factor family protein	[more]

BLAST of Lsi02G011030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118116\|ref\|XP_008458954.1\|	2.3e-78	77.07	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|449443690\|ref\|XP_004139610.1\|	6.3e-68	72.40	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|659133060\|ref\|XP_008466532.1\|	9.7e-61	57.59	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|700204855\|gb\|KGN59988.1\|	5.3e-59	57.47	hypothetical protein Csa_3G860240 [Cucumis sativus]	[more]
gi\|778686644\|ref\|XP_004147877.2\|	9.1e-59	58.53	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011030.1	Lsi02G011030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 53..68 score: 4.3E-22coord: 68..89 score: 4.3E-22coord: 33..53 score: 4.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 41..87 score: 6.5
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 31..90 score: 1.5
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 31..91 score: 27
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 32..101 score: 2.49
None	No IPR available	unknown	Coil	Coil	coord: 116..136 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 32..263 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G011030	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G011030	Cucumber (Gy14) v2	cgyblsiB038
Lsi02G011030	Cucumber (Gy14) v2	cgyblsiB407
Lsi02G011030	Melon (DHL92) v3.6.1	lsimedB190
Lsi02G011030	Melon (DHL92) v3.6.1	lsimedB238
Lsi02G011030	Silver-seed gourd	carlsiB948
Lsi02G011030	Silver-seed gourd	carlsiB949
Lsi02G011030	Cucumber (Chinese Long) v3	cuclsiB033
Lsi02G011030	Cucumber (Chinese Long) v3	cuclsiB470
Lsi02G011030	Watermelon (97103) v2	lsiwmbB153
Lsi02G011030	Watermelon (97103) v2	lsiwmbB160
Lsi02G011030	Wax gourd	lsiwgoB233
Lsi02G011030	Wax gourd	lsiwgoB245
Lsi02G011030	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi02G011030	Cucumber (Gy14) v1	cgylsiB024
Lsi02G011030	Cucurbita maxima (Rimu)	cmalsiB206
Lsi02G011030	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G011030	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G011030	Cucurbita moschata (Rifu)	cmolsiB196
Lsi02G011030	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G011030	Cucurbita moschata (Rifu)	cmolsiB359
Lsi02G011030	Cucurbita pepo (Zucchini)	cpelsiB027
Lsi02G011030	Cucurbita pepo (Zucchini)	cpelsiB427
Lsi02G011030	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G011030	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G011030	Wild cucumber (PI 183967)	cpilsiB038
Lsi02G011030	Wild cucumber (PI 183967)	cpilsiB447
Lsi02G011030	Cucumber (Chinese Long) v2	culsiB032
Lsi02G011030	Cucumber (Chinese Long) v2	culsiB037
Lsi02G011030	Melon (DHL92) v3.5.1	lsimeB180
Lsi02G011030	Melon (DHL92) v3.5.1	lsimeB227
Lsi02G011030	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G011030	Watermelon (Charleston Gray)	lsiwcgB175
Lsi02G011030	Watermelon (97103) v1	lsiwmB201