Lsi02G011000 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G011000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 12517812 .. 12519105 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGCATAAGATTCTCTTTTTTTTTTCTCTCTCAAGTTTTATTGCTTTGCTCATTCTTCACTCTCTATCCTATAAATATCCTCTATCACATTCATATTTTCTTCATCTCTCTCTTTAGTTTCCTCATTTATTTTCATTTCTTCTCTTAATTAATTAAAAATATCCCTTCCTTTCTTTTCTTACATCTTCTTCAATGGCCACTGAGGTAACTCTTTTTCTGATCTCTTCAAAAAGTTTTGTATAAGAAGCTTCACTTAGTTGCTTTCATGAAATCAAACTAAACCAACAACAATGCATTTGATCCCTTTCATTTTGCTTAACTTTAGAGTCTTGTAATTTTCTTGACACATCTAATTATGATCCAAGGGTTCTTGGAGTCAGAAATGTTCATATCAAAACCATAACTTCAAAGTTTTACTTTTTTTTTTTCCAATTTTAATGGACATAAAATTTGTTTATTTTGTTTCTTAATTAATCTTAGTTCTTTTAATTGAATTTACTTTTTTTTTTTGGGATAATTAATCTTAATTCTGTTTATGTAATCATATTGTCATGAAATTGAGATACATATTTTATGTCGATGGAGCTTCGTTCTATGTATATTTTATTTAATATCATAGCAACACTGGGTTTTGCAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGTAAAAAAGAAAGAGAGAGGGATATAAGACCTAAAAGTTTGAGTAGGAAAAAAAAAATGGTTCCTACTTAATACATGTTCTGGGTTTCTTCCCTGCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAGAGATGAATGGAAAGAGCTACTATTGGGGGGTGGGGGAGTATTAATTTATGATCTCAGCTTTATGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTTTTTTTT

mRNA sequence

TTTTGCATAAGATTCTCTTTTTTTTTTCTCTCTCAAGTTTTATTGCTTTGCTCATTCTTCACTCTCTATCCTATAAATATCCTCTATCACATTCATATTTTCTTCATCTCTCTCTTTAGTTTCCTCATTTATTTTCATTTCTTCTCTTAATTAATTAAAAATATCCCTTCCTTTCTTTTCTTACATCTTCTTCAATGGCCACTGAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAGAGATGAATGGAAAGAGCTACTATTGGGGGGTGGGGGAGTATTAATTTATGATCTCAGCTTTATGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAG

Protein sequence

MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVEQSAEAPVEPANPTEEPKVEEEEKKEEVVVPTESVAKEEEVPEVEEPKAEEPPAAEAEVEAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE
Homology
[Close]
BLAST of Lsi02G011000 vs. TrEMBL
Match: A0A0A0LTG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 1 

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVESA +L ETVE   VVK E+KS EEQP IEADPE EPAN +EE KPE  E DQVE
Sbjct: 1   MATEVESAASLPETVE---VVKVEKKSSEEQPVIEADPEVEPAN-LEEPKPEALEPDQVE 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEE-PKAEEPPAAEAEV 120
           +S EAPV      EE KVEE +EKKEE VV TES  KEE VPE EE  K EE PA  AEV
Sbjct: 61  ESTEAPV------EESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPA--AEV 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           EAE +P VEEEK +EEEK    P EVAEE+SQE
Sbjct: 121 EAEAKPQVEEEKAIEEEK----PTEVAEEKSQE 137

[Close]
BLAST of Lsi02G011000 vs. NCBI nr
Match: gi|659118114|ref|XP_008458953.1| (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 105/153 (68.63%), Postives = 111/153 (72.55%), Query Frame = 1 

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVE A  L ETVE   VVK EEKSPEEQP IEADPE EP N+ EE KPE  E DQ +
Sbjct: 1   MATEVEPAAPLPETVE---VVKVEEKSPEEQPVIEADPEVEPTNL-EEPKPEAPEPDQTD 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEEP-KAEEPPAAEAEV 120
           +S EAPVE ANP EE KVEE +EKKEE VV TE+V KEE V E EEP KAEE PAA    
Sbjct: 61  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAA---- 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E E EP VEEEK VEEEK    PVEVAEE+SQE
Sbjct: 121 EVEAEPPVEEEKVVEEEK----PVEVAEEKSQE 141

[Close]
BLAST of Lsi02G011000 vs. NCBI nr
Match: gi|449443564|ref|XP_004139547.1| (PREDICTED: protein TsetseEP-like [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 1 

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVESA +L ETVE   VVK E+KS EEQP IEADPE EPAN +EE KPE  E DQVE
Sbjct: 1   MATEVESAASLPETVE---VVKVEKKSSEEQPVIEADPEVEPAN-LEEPKPEALEPDQVE 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEE-PKAEEPPAAEAEV 120
           +S EAPV      EE KVEE +EKKEE VV TES  KEE VPE EE  K EE PA  AEV
Sbjct: 61  ESTEAPV------EESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPA--AEV 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           EAE +P VEEEK +EEEK    P EVAEE+SQE
Sbjct: 121 EAEAKPQVEEEKAIEEEK----PTEVAEEKSQE 137

The following BLAST results are available for this feature:
BLAST of Lsi02G011000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G011000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTG9_CUCSA1.8e-2166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G187170 PE=4 SV=1[more]
BLAST of Lsi02G011000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi02G011000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118114|ref|XP_008458953.1|1.9e-2468.63PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
gi|449443564|ref|XP_004139547.1|2.5e-2166.67PREDICTED: protein TsetseEP-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011000.1Lsi02G011000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G011000CSPI01G16030Wild cucumber (PI 183967)cpilsiB033
Lsi02G011000Bhi08G000692Wax gourdlsiwgoB245
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G011000Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi02G011000Cucumber (Gy14) v1cgylsiB024
Lsi02G011000Cucurbita maxima (Rimu)cmalsiB206
Lsi02G011000Cucurbita maxima (Rimu)cmalsiB207
Lsi02G011000Cucurbita maxima (Rimu)cmalsiB369
Lsi02G011000Cucurbita moschata (Rifu)cmolsiB196
Lsi02G011000Cucurbita moschata (Rifu)cmolsiB197
Lsi02G011000Cucurbita moschata (Rifu)cmolsiB359
Lsi02G011000Cucurbita pepo (Zucchini)cpelsiB027
Lsi02G011000Cucurbita pepo (Zucchini)cpelsiB427
Lsi02G011000Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G011000Wild cucumber (PI 183967)cpilsiB038
Lsi02G011000Wild cucumber (PI 183967)cpilsiB447
Lsi02G011000Cucumber (Chinese Long) v2culsiB032
Lsi02G011000Cucumber (Chinese Long) v2culsiB037
Lsi02G011000Melon (DHL92) v3.5.1lsimeB180
Lsi02G011000Melon (DHL92) v3.5.1lsimeB227
Lsi02G011000Watermelon (Charleston Gray)lsiwcgB169
Lsi02G011000Watermelon (Charleston Gray)lsiwcgB175
Lsi02G011000Watermelon (97103) v1lsiwmB201
Lsi02G011000Cucumber (Gy14) v2cgyblsiB029
Lsi02G011000Cucumber (Gy14) v2cgyblsiB038
Lsi02G011000Cucumber (Gy14) v2cgyblsiB407
Lsi02G011000Melon (DHL92) v3.6.1lsimedB190
Lsi02G011000Melon (DHL92) v3.6.1lsimedB238
Lsi02G011000Silver-seed gourdcarlsiB948
Lsi02G011000Silver-seed gourdcarlsiB949
Lsi02G011000Cucumber (Chinese Long) v3cuclsiB033
Lsi02G011000Cucumber (Chinese Long) v3cuclsiB470
Lsi02G011000Watermelon (97103) v2lsiwmbB153
Lsi02G011000Watermelon (97103) v2lsiwmbB160
Lsi02G011000Wax gourdlsiwgoB233