Lsi02G010640 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G010640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L23, chloroplastic
Locationchr02 : 11596167 .. 11596432 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTATTTACGGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCATGATCAACTAGGACAGAAATAAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGATTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA

mRNA sequence

ATGCAGACAGAAATAAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGATTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA

Coding sequence (CDS)

ATGCAGACAGAAATAAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGATTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA

Protein sequence

MQTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKKKT
Homology
[Close]
BLAST of Lsi02G010640 vs. Swiss-Prot
Match: RK23_POPAL (50S ribosomal protein L23, chloroplastic OS=Populus alba GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-29
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. Swiss-Prot
Match: RK23_VITVI (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. Swiss-Prot
Match: RK23_JASNU (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. Swiss-Prot
Match: RK23_COFAR (50S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. Swiss-Prot
Match: RK23_NANDO (50S ribosomal protein L23, chloroplastic OS=Nandina domestica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRM PIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TrEMBL
Match: A0A0F6WW20_9ROSI (50S ribosomal protein L23, chloroplastic OS=Populus cathayana GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TrEMBL
Match: A0A075EDC6_9ROSI (50S ribosomal protein L23, chloroplastic OS=Populus fremontii GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TrEMBL
Match: A0A0D4WP24_POPTN (50S ribosomal protein L23, chloroplastic OS=Populus tremula GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TrEMBL
Match: A0A023SYR5_9ROSI (50S ribosomal protein L23, chloroplastic OS=Couepia guianensis GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TrEMBL
Match: A0A023I0G5_BALVI (50S ribosomal protein L23, chloroplastic OS=Balanops vieillardii GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TAIR10
Match: ATCG00840.1 (ATCG00840.1 ribosomal protein L23.1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-27
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGK +RM PI+GHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. TAIR10
Match: ATCG01300.1 (ATCG01300.1 ribosomal protein L23)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-27
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGK +RM PI+GHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. NCBI nr
Match: gi|984913437|gb|AMC32148.1| (ribosomal protein L23 (chloroplast) [Euphorbia marginata])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. NCBI nr
Match: gi|110227121|ref|YP_665600.1| (ribosomal protein L23 [Populus alba])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. NCBI nr
Match: gi|817528763|ref|YP_009136643.1| (ribosomal protein L23 (plastid) [Viola seoulensis])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. NCBI nr
Match: gi|527354774|gb|AGS12723.1| (ribosomal protein L23 (chloroplast) [Bhesa archboldiana])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

[Close]
BLAST of Lsi02G010640 vs. NCBI nr
Match: gi|326909433|ref|YP_004327723.1| (ribosomal protein L23 [Hevea brasiliensis])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 2  QTEIKHWVELFFGVKVIAMNSHRFPGKGRRMRPIMGHTMHYRCMIITLQPGYSIPPLRKK 61
          +TEIKHWVELFFGVKVIAMNSHR PGKGRRMRPIMGHTMHYR MIITLQPGYSIPPLRKK
Sbjct: 32 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKK 91

Query: 62 KT 64
          +T
Sbjct: 92 RT 93

The following BLAST results are available for this feature:
BLAST of Lsi02G010640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK23_POPAL5.2e-2993.5550S ribosomal protein L23, chloroplastic OS=Populus alba GN=rpl23-A PE=3 SV=1[more]
RK23_VITVI3.4e-2891.9450S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1[more]
RK23_JASNU3.4e-2891.9450S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum GN=rpl23-A PE=3 ... [more]
RK23_COFAR3.4e-2891.9450S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1[more]
RK23_NANDO3.4e-2891.9450S ribosomal protein L23, chloroplastic OS=Nandina domestica GN=rpl23-A PE=3 SV... [more]
BLAST of Lsi02G010640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0F6WW20_9ROSI5.8e-2793.5550S ribosomal protein L23, chloroplastic OS=Populus cathayana GN=rpl23 PE=3 SV=1[more]
A0A075EDC6_9ROSI5.8e-2793.5550S ribosomal protein L23, chloroplastic OS=Populus fremontii GN=rpl23 PE=3 SV=1[more]
A0A0D4WP24_POPTN5.8e-2793.5550S ribosomal protein L23, chloroplastic OS=Populus tremula GN=rpl23 PE=3 SV=1[more]
A0A023SYR5_9ROSI5.8e-2793.5550S ribosomal protein L23, chloroplastic OS=Couepia guianensis GN=rpl23 PE=3 SV=... [more]
A0A023I0G5_BALVI5.8e-2793.5550S ribosomal protein L23, chloroplastic OS=Balanops vieillardii GN=rpl23 PE=3 S... [more]
BLAST of Lsi02G010640 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00840.11.0e-2787.10ATCG00840.1 ribosomal protein L23.1[more]
ATCG01300.11.0e-2787.10ATCG01300.1 ribosomal protein L23[more]
BLAST of Lsi02G010640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|984913437|gb|AMC32148.1|8.3e-2793.55ribosomal protein L23 (chloroplast) [Euphorbia marginata][more]
gi|110227121|ref|YP_665600.1|8.3e-2793.55ribosomal protein L23 [Populus alba][more]
gi|817528763|ref|YP_009136643.1|8.3e-2793.55ribosomal protein L23 (plastid) [Viola seoulensis][more]
gi|527354774|gb|AGS12723.1|8.3e-2793.55ribosomal protein L23 (chloroplast) [Bhesa archboldiana][more]
gi|326909433|ref|YP_004327723.1|8.3e-2793.55ribosomal protein L23 [Hevea brasiliensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G010640.1Lsi02G010640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 3..56
score: 1.6
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 3..57
score: 2.16
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 3..55
score: 2.1
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 2..63
score: 1.3
NoneNo IPR availablePANTHERPTHR11620:SF11SUBFAMILY NOT NAMEDcoord: 2..63
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G010640Cucumber (Chinese Long) v3cuclsiB034
Lsi02G010640Watermelon (97103) v2lsiwmbB153
Lsi02G010640Wax gourdlsiwgoB255
Lsi02G010640Cucumber (Gy14) v1cgylsiB539
Lsi02G010640Cucurbita maxima (Rimu)cmalsiB207
Lsi02G010640Cucurbita maxima (Rimu)cmalsiB369
Lsi02G010640Cucurbita moschata (Rifu)cmolsiB197
Lsi02G010640Cucurbita moschata (Rifu)cmolsiB356
Lsi02G010640Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G010640Wild cucumber (PI 183967)cpilsiB034
Lsi02G010640Cucumber (Chinese Long) v2culsiB033
Lsi02G010640Melon (DHL92) v3.5.1lsimeB180
Lsi02G010640Watermelon (Charleston Gray)lsiwcgB169
Lsi02G010640Watermelon (97103) v1lsiwmB206
Lsi02G010640Cucumber (Gy14) v2cgyblsiB030
Lsi02G010640Melon (DHL92) v3.6.1lsimedB190
Lsi02G010640Silver-seed gourdcarlsiB104