Lsi02G010400 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G010400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Lipid transfer protein
Location	chr02 : 11053391 .. 11053681 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATTTGTTTCTTTGAATGGTCTGCGCTTTTTGTTGGTTGTGATTGTGGTGCTTGTCAATGAAACTCAACATGTGCAGCCAGTGAAATGCGACTCAAAAGAACTGAGACCATGTCGTTTGGCCTTCCGAATGTCAGGGGAGCCATCATCAGCTTGTTGCGACAAGGTGAAGGAGAGACCATGCTATTGTGGATACATGAAAAATCCAAAGATTAAACCCTATTTAGAGTATGATGACAACAAAGATCTCATTGCTCAATGTGGCGTTTCCATTCCAACTTGTTAA

mRNA sequence

ATGAAGAAATTTGTTTCTTTGAATGGTCTGCGCTTTTTGTTGGTTGTGATTGTGGTGCTTGTCAATGAAACTCAACATGTGCAGCCAGTGAAATGCGACTCAAAAGAACTGAGACCATGTCGTTTGGCCTTCCGAATGTCAGGGGAGCCATCATCAGCTTGTTGCGACAAGGTGAAGGAGAGACCATGCTATTGTGGATACATGAAAAATCCAAAGATTAAACCCTATTTAGAGTATGATGACAACAAAGATCTCATTGCTCAATGTGGCGTTTCCATTCCAACTTGTTAA

Coding sequence (CDS)

ATGAAGAAATTTGTTTCTTTGAATGGTCTGCGCTTTTTGTTGGTTGTGATTGTGGTGCTTGTCAATGAAACTCAACATGTGCAGCCAGTGAAATGCGACTCAAAAGAACTGAGACCATGTCGTTTGGCCTTCCGAATGTCAGGGGAGCCATCATCAGCTTGTTGCGACAAGGTGAAGGAGAGACCATGCTATTGTGGATACATGAAAAATCCAAAGATTAAACCCTATTTAGAGTATGATGACAACAAAGATCTCATTGCTCAATGTGGCGTTTCCATTCCAACTTGTTAA

Protein sequence

MKKFVSLNGLRFLLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVKERPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC

Homology

[Close]

BLAST of Lsi02G010400 vs. Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-12
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 1  MKKFVSLNGLRFLLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVK- 60
          MK  + ++ +  ++VV + L++     + V C+  EL  C  A     +PSS CC K+K 
Sbjct: 3  MKMKMKMSVVCAVVVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKV 62

Query: 61 ERPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          + PC C Y+KNP +K Y+     K +++ CGV+ P C
Sbjct: 63 QEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99

[Close]

BLAST of Lsi02G010400 vs. Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-10
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 30 VKCDSKELRPCRLAFRMSGEPS-SACCDKVKE-RPCYCGYMKNPKIKPYLEYDDNKDLIA 89
          V C   +L PC L    SG PS + CC K++E RPC CGY+KNP ++ Y+   + + L +
Sbjct: 1  VTCSPVQLSPC-LGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLAS 60

Query: 90 QCGVSIPTC 97
           CGV +P C
Sbjct: 61 NCGVPVPQC 68

[Close]

BLAST of Lsi02G010400 vs. Swiss-Prot
Match: NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-10
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 32 CDSKELRPCRLAFRMSGEPSSACCDKVKE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQCG 91
          C + +L PC  A   +  PS+ACC+K+KE +PC CGY+K+P +K Y+     +   + CG
Sbjct: 3  CSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASSCG 62

Query: 92 VSI 94
          V++
Sbjct: 63 VAL 65

[Close]

BLAST of Lsi02G010400 vs. TrEMBL
Match: A0A0A0M3W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-22
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 16 VIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKV-KERPCYCGYMKNPKIK 75
          ++VV++NETQ  + VKCD  ELRPC L+F MS EPSSACC KV + R CYC Y KNPK +
Sbjct: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65

Query: 76 PYLEYDDNKDLIAQCGVSIPTC 97
          PYL+YD  + +I+ CGV+IPTC
Sbjct: 66 PYLKYDATQRIISDCGVAIPTC 87

[Close]

BLAST of Lsi02G010400 vs. TrEMBL
Match: V4SY21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013188mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1   MKKFVSLNGLRFLLVVIVVLVNETQ-HV-QPVKCDSKELRPCRLAFRMSGEPSSACCDKV 60
           M++  S+  +RF++VV+V +   +Q HV + V C   EL PC  A   S  PS ACC+K+
Sbjct: 2   MQRVSSVEAVRFVMVVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKL 61

Query: 61  KE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
           ++ RPC CGY++NP ++ Y+   + K ++A CG+  P C
Sbjct: 62  RQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of Lsi02G010400 vs. TrEMBL
Match: A0A067FIG1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034237mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1   MKKFVSLNGLRFLLVVIVVLVNETQ-HV-QPVKCDSKELRPCRLAFRMSGEPSSACCDKV 60
           M++  S+  +RF++VV+V +   +Q HV + V C   EL PC  A   S  PS ACC+K+
Sbjct: 2   MQRVSSVEAVRFVMVVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKL 61

Query: 61  KE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
           ++ RPC CGY++NP ++ Y+   + K ++A CG+  P C
Sbjct: 62  RQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of Lsi02G010400 vs. TrEMBL
Match: S4TID2_GOSHI (Lipid transfer protein OS=Gossypium hirsutum GN=LTP9 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 3  KFVSLNGLRFLLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVK-ER 62
          K VS   L  + + +V+   E++  + V C+  EL PC  AF  S  PS+ACC K+K ++
Sbjct: 2  KRVSFVALCVVALSVVLFSGESRMAEAVTCNPTELSPCLSAFTSSSPPSAACCSKLKAQK 61

Query: 63 PCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          PC CGY+KNP +K Y+   + K++ + CGV+ P C
Sbjct: 62 PCLCGYIKNPSLKQYVNSPNAKNVASTCGVTYPKC 96

[Close]

BLAST of Lsi02G010400 vs. TrEMBL
Match: A0A067KD74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13009 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 1  MKKFVSLNGLRFLLVVIVVLV---NETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDK 60
          MKKF S +   FL VV+ V+V    E +    V C   +L PC  A + S  PS+ CC K
Sbjct: 1  MKKF-SYSAFPFLAVVLAVMVVMAAEVRFSNAVNCSPAQLSPCLPAIKSSSPPSNDCCVK 60

Query: 61 VKE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          ++E RPC+CGY+KNP ++ Y+     ++++  CGV  PTC
Sbjct: 61 LREQRPCFCGYVKNPSLRQYVSSPRAREVVKSCGVPFPTC 99

[Close]

BLAST of Lsi02G010400 vs. TAIR10
Match: AT1G66850.1 (AT1G66850.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-12
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1


Query: 30  VKCDSKELRPCRLAFRMSGEPSSACCDKVKE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQ 89
           V CD+++L+PC  A    G+PS ACC K+ E + C CG+ KNP    Y+   + + ++  
Sbjct: 35  VTCDARQLQPCLAAITGGGQPSGACCAKLTEQQSCLCGFAKNPAFAQYISSPNARKVLLA 94

Query: 90  CGVSIPTC 97
           C V+ PTC
Sbjct: 95  CNVAYPTC 102

[Close]

BLAST of Lsi02G010400 vs. TAIR10
Match: AT3G18280.1 (AT3G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1


Query: 5  VSLNGLRFLLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVK-ERPC 64
          VSL  L  +L++I+    E      V C   +L PC  A   S  PS+ CC K+K +RPC
Sbjct: 9  VSLFALAAVLLMILAPAAEA-----VTCSPMQLSPCATAITSSSPPSALCCAKLKEQRPC 68

Query: 65 YCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
           CGYM+NP ++ ++   + + +   C + IP C
Sbjct: 69 LCGYMRNPSLRRFVSTPNARKVSKSCKLPIPRC 96

[Close]

BLAST of Lsi02G010400 vs. TAIR10
Match: AT1G73780.1 (AT1G73780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-11
Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 1


Query: 13 LLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVKERP-CYCGYMKNP 72
          LL++IV   N    V P  C+  +L PC        EPS  CC KVKE+  C C Y+KNP
Sbjct: 16 LLILIVAQENRVAAVDP--CNPAQLSPCLETIMKGSEPSDLCCSKVKEQQHCICQYLKNP 75

Query: 73 KIKPYLEYDDNKDLIAQCGVSIPTC 97
            K +L   + K +   C    P C
Sbjct: 76 NFKSFLNSPNAKIIATDCHCPYPKC 98

[Close]

BLAST of Lsi02G010400 vs. TAIR10
Match: AT1G48750.1 (AT1G48750.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 26/85 (30.59%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 13 LLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVK-ERPCYCGYMKNP 72
          L +   +L+      + V C   +L  C  A   S  PS ACC K++ ++PC CGYM+NP
Sbjct: 10 LALAAAILLLTVPVAEGVTCSPMQLASCAAAMTSSSPPSEACCTKLREQQPCLCGYMRNP 69

Query: 73 KIKPYLEYDDNKDLIAQCGVSIPTC 97
           ++ Y+   + + +   C +  P+C
Sbjct: 70 TLRQYVSSPNARKVSNSCKIPSPSC 94

[Close]

BLAST of Lsi02G010400 vs. TAIR10
Match: AT5G38195.1 (AT5G38195.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 28/90 (31.11%), Postives = 45/90 (50.00%), Query Frame = 1


Query: 10 LRFLLVVIVVLVNETQHVQPVK--CDSKELRPCRLAFRMSGEPSSACCDK-VKERPCYCG 69
          L  + VVIVV+ +       V   C   EL PC  A    G+P+  CCDK ++++ C CG
Sbjct: 6  LMVITVVIVVMSSPILIKSEVSSSCIPTELMPCLPAMTTGGQPTKDCCDKLIEQKECLCG 65

Query: 70 YMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          Y+ NP    ++     + ++  C +  P+C
Sbjct: 66 YINNPLYSTFVSSPVARKVLEVCNIPYPSC 95

[Close]

BLAST of Lsi02G010400 vs. NCBI nr
Match: gi|659118474|ref|XP_008459140.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-23
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 7  LNGLRFLLVVIVVLV-NETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVKE-RPCY 66
          + G+  L+VVIVV+V N TQ  +  KCD +ELRPC L+F MS EPSSACC KV E R CY
Sbjct: 1  MKGICLLIVVIVVVVINGTQVSKAGKCDPEELRPCHLSFTMSMEPSSACCKKVVEHRSCY 60

Query: 67 CGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          C Y KNPKI+PYL+YD  +++I+ CGV+IPTC
Sbjct: 61 CEYSKNPKIQPYLKYDATQNIISHCGVAIPTC 92

[Close]

BLAST of Lsi02G010400 vs. NCBI nr
Match: gi|700211810|gb|KGN66906.1| (hypothetical protein Csa_1G711160 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-22
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 16 VIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKV-KERPCYCGYMKNPKIK 75
          ++VV++NETQ  + VKCD  ELRPC L+F MS EPSSACC KV + R CYC Y KNPK +
Sbjct: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65

Query: 76 PYLEYDDNKDLIAQCGVSIPTC 97
          PYL+YD  + +I+ CGV+IPTC
Sbjct: 66 PYLKYDATQRIISDCGVAIPTC 87

[Close]

BLAST of Lsi02G010400 vs. NCBI nr
Match: gi|694439405|ref|XP_009346593.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Pyrus x bretschneideri])

HSP 1 Score: 85.5 bits (210), Expect = 5.5e-14
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 5  VSLNGLRFLLVV--IVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVKE-R 64
          +S   L F L+V  +V L +E + V+ V C   EL PC  A R    PS+ CC+K+KE +
Sbjct: 3  LSSGSLAFCLMVAMVVALCDEARTVEAVTCSPLELSPCLEAIRSGAPPSATCCEKLKEQQ 62

Query: 65 PCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
          PC+C Y+KNP +KPY++  + K + + CGV  P C
Sbjct: 63 PCFCEYIKNPVLKPYIDNPNAKKVASACGVPFPQC 97

[Close]

BLAST of Lsi02G010400 vs. NCBI nr
Match: gi|567876271|ref|XP_006430725.1| (hypothetical protein CICLE_v10013188mg [Citrus clementina])

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1   MKKFVSLNGLRFLLVVIVVLVNETQ-HV-QPVKCDSKELRPCRLAFRMSGEPSSACCDKV 60
           M++  S+  +RF++VV+V +   +Q HV + V C   EL PC  A   S  PS ACC+K+
Sbjct: 2   MQRVSSVEAVRFVMVVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKL 61

Query: 61  KE-RPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
           ++ RPC CGY++NP ++ Y+   + K ++A CG+  P C
Sbjct: 62  RQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of Lsi02G010400 vs. NCBI nr
Match: gi|697144902|ref|XP_009626576.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformis])

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 1  MKKFVSLNGLRFLLVVIVVLVNETQHVQPVKCDSKELRPCRLAFRMSGEPSSACCDKVKE 60
          MKK  +     FL+V +V+ + E +  + V C + EL PC  A   S  PSSACC K++E
Sbjct: 1  MKKGCNSFAAIFLVVTLVLFLGEFRATEAVTCSAVELSPCVGAITSSQPPSSACCAKLRE 60

Query: 61 -RPCYCGYMKNPKIKPYLEYDDNKDLIAQCGVSIPTC 97
           +PC CGY+KNP ++PY+   + K +   CGV  P+C
Sbjct: 61 QKPCLCGYLKNPNLRPYVNSPNAKRVARSCGVPTPSC 97

The following BLAST results are available for this feature:

BLAST of Lsi02G010400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP_VIGUN	8.8e-12	34.02	Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=...	[more]
NLTP2_PRUAR	3.7e-10	43.48	Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1	[more]
NLTP2_APIGA	8.3e-10	39.68	Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=...	[more]

BLAST of Lsi02G010400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3W7_CUCSA	3.8e-22	60.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1	[more]
V4SY21_9ROSI	6.6e-14	39.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013188mg PE=4 SV=1	[more]
A0A067FIG1_CITSI	6.6e-14	39.39	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034237mg PE=4 SV=1	[more]
S4TID2_GOSHI	1.1e-13	40.00	Lipid transfer protein OS=Gossypium hirsutum GN=LTP9 PE=4 SV=1	[more]
A0A067KD74_JATCU	1.5e-13	41.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13009 PE=4 SV=1	[more]

BLAST of Lsi02G010400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66850.1	2.5e-12	39.71	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G18280.1	1.6e-11	35.48	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G73780.1	7.9e-11	37.65	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G48750.1	3.0e-10	30.59	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G38195.1	1.3e-08	31.11	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Lsi02G010400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118474\|ref\|XP_008459140.1\|	6.5e-23	60.87	PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo]	[more]
gi\|700211810\|gb\|KGN66906.1\|	5.5e-22	60.98	hypothetical protein Csa_1G711160 [Cucumis sativus]	[more]
gi\|694439405\|ref\|XP_009346593.1\|	5.5e-14	42.11	PREDICTED: non-specific lipid-transfer protein 2-like [Pyrus x bretschneideri]	[more]
gi\|567876271\|ref\|XP_006430725.1\|	9.4e-14	39.39	hypothetical protein CICLE_v10013188mg [Citrus clementina]	[more]
gi\|697144902\|ref\|XP_009626576.1\|	9.4e-14	41.24	PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010400.1	Lsi02G010400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 13..95 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..96 score: 2.38
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 31..96 score: 5.7
None	No IPR available	PANTHER	PTHR33214	FAMILY NOT NAMED	coord: 2..96 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G010400	Silver-seed gourd	carlsiB874
Lsi02G010400	Cucumber (Chinese Long) v3	cuclsiB034
Lsi02G010400	Watermelon (97103) v2	lsiwmbB153
Lsi02G010400	Wax gourd	lsiwgoB255
Lsi02G010400	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G010400	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G010400	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G010400	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G010400	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G010400	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G010400	Wild cucumber (PI 183967)	cpilsiB034
Lsi02G010400	Cucumber (Chinese Long) v2	culsiB033
Lsi02G010400	Melon (DHL92) v3.5.1	lsimeB180
Lsi02G010400	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G010400	Watermelon (Charleston Gray)	lsiwcgB177
Lsi02G010400	Watermelon (97103) v1	lsiwmB206
Lsi02G010400	Cucumber (Gy14) v2	cgyblsiB030
Lsi02G010400	Melon (DHL92) v3.6.1	lsimedB190