Lsi02G010240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G010240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	snRNA-activating protein complex subunit 3
Location	chr02 : 10700452 .. 10704574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTATTCTTCTAAAATAACGAATTTGTGAATAGTGATTTAAATATGCATGTGTAAATTTTTACTACTCATTTCATCACTAATTTATAAACAACCAGTAACTTTCTCTGTGATTTTCAGGCTCAAATTGGTCCTGGTCAAGTATTAGCCCAATTTGGCAGCGATCTATTGTTTTTGTTAGGTTGAACAAATTTTTAGAAAGCAAAATTACCAGAACCATTAAGGCCCCAACAAATAGAGTCCCTGTTATGAGTCAGTTGGACATGACCCTTGTTCAACCTATATTGTTATTTAATATTCAAACATGCTAGTAGATTATCTGTGGGAGGATTTAATATCATCCTTTTTATCCGCTAAAATATTGCATCTTTCAATATGCTTCTGAACTGGATGCTATGTAAATTATAATAGGTGTATTTATGTTCTTTTGCTGATGTTTATATGTATATTGGTATAGTATATAGGCCTGGCTCTAGCAATGTGACGGTGTTTGCAAACTTTATTCTCAGAATCTCAGTGCATGAAAAAGGTGTTGATGGGTGACTAGGAAGGGAAGGCTGGAGTGTCTGATTTGTTGTAGGATTTATGGGGGAGAATAATAAAATCTTTAAGAGGAATGGAAAGAGAGCCGTGAGATGTTTGTGCCCATGTGAGATTAGATGTTTCTTTTTGGGCGTTGGTGGCGAACCCCTTTTGTAATTATTCGCTAGGTTTTATTTTCTTGATTGGACCCTCTTTCTTTAGGGTTTCTCCCTTTTCGTGAGTTTTTTTTTTTTTTTTTGTTGGTATGCCCGTTATATCCTTTAATTTTTCCTCAATGAAAGTTGGTCTTTTATCCAAGAAAAGAAAAAAAAAGAAAACAAAAAGGAGGAGAACCTCTTGTCATTCATTTGAGTATATTGTCATTCATTTGAGTATAGAGCTTAATGGCTTTATGGGTAGTTAGGAAAGGATGAGTGCCTCTTGTAGTGAATTTGATGAGCAAAGTAAGATACCCTGAACTCATCTGATTTGGTGGCCAATTTGTATAGCCTTAAAAGTGGCGTGGAGGTTGGGATTTCAATTCGTAACACAATATAGTGAATGACATGTCCTGGCCAGCCATAAGAGGGTAAAAGATGGTGTGATCTATTTGACTTCTTCCTTTGAAACTAAATTGCTACAGGAAGGCATTTTATAGATTCACTTACTGATATTAACAATTTTGCAACCGAGTACCTCATTCTACCTGACCTTACTTTTCCTCTTTAATGAATTGGCCTTGTAACTGCTGAATGTTATGTTGGCCAACTAGAGCCACCTTACAACTGGAATGCATAATCTTAAATGTGGAGTCCTAGCATGAAATACACAAGCTATAATTGATCCTTATAATTTGATGATTCTTGTTTGATCATGCATTTCTTTTCATGTATCTCCCTCCGCTGATAGGAATTGATAACATGTTAGGTGAAATCACTGAGCAGTGGAAAACACGAAACTCTGCAGCATCCAACGACTGTACTTTTTGTAGAGATTTTCCATAAATCTCGCAAGATGGTGAAGGTATGCTTCTCTTTTTCTTAACAATTGTCAATTTAAATGGGTTTGGTAGAAATTAATAACTATTGATGAAGACTTAGTCAAATCACGGTTGAGAAACAGTGATAACGTCTTTATTATTTCTTAGATATTAGGTAGTAAATGTTGTTTCATTTCTTCCATTCTTCATTATTGTTGGTCAAGCAGACTTTGTTACATTAACATACTTGTTTTTATGTATCAAACCTCACTACCAGTATCTATTTCTCTTGATGACTATATATATTGAAGAGGTATTGACAAGATAGTACCATGCTATAATAGAAAGGACCAAGGTTATAATTTATTTTTGGCTTCTAGGTGATCTTTCAATAAAAGAAAGAAAGAAAAAAAAAAAAGAAACTATTATTTTTTATGCTCTTTGTTTGCTCAAGGATCCTGTATTTGCATTGTGGAGCACAAGGATTCCTAGAAAGCTAAATATTTTAACTGGGATACGTTTCATGGAGGATGTTAGCTCTGCCGTAGAATTCAATGAAAACGCCCTTACTTGGCAATTAACTTGAGCCTCATTTTTCTCCTATTGTAGAAAATATGGTGTTCTACCTTGAATGCTTTTCGGCATTTGAGTTTGCCACCAAAGATAATATCTTATACTTGTGGATATATAGGCTTAAAAGGAGAGCTAAACAGCCAATATGAGCATAGCTCAGCAGTAGTGAACATATACTCCTTTCCTTGAGATTAGATGTTCAAATCCCTATACCGACACATTTGTTGTACTAAAAAGTAGGAGAGCTAAAGAATTATGGACCAATGTTGGAACTTGTATGTTGAATAAACAAATCTCAAAAAATGCAAACAAGTTAATGGGGAGGAAAGATTAGACCTTATCAGATGATAGATATTATGCTTCTTGGTGTGTTCAAAGATTTTGATAGTTATTCTTCTAAATCAATGAACTCTAGGTGGGATACTTTCTTGTAGTTGTAGTACAAACTTGTATACTTTTATGTCAATCAGAGCATAGTTCAATTGGTTAAAGGCATATACCCTCAACTAAGGGGTTAGAGGTTTGAATCTTCCAACCTCACTCAACTTTGTTCTGGTTATTTACGTCATCATATGTATTTGACCTTCCTGTGATATTCTTCTTTACAGACTCAAGAGTTTTTGGCCCTTGGACGACAAACGTTAGCAGAACTGAAGGACAAGATTTATTGCTCGACAGATTCGTTAATGGAAAAGGCTGGGCAGCAAGATTCGTCTGGATATTTCCTTATAGAAGTAAGAAATTCGAGGAGCCCTGTATTTACCAAATTTGATTTTAAATAACCGAATGCAGTTTTGTTTATATCCAGGATGTTTTCTGCAATGATTTGAGGAATCCTTCCGCAATAGATTATAGCAAACCTATACTTGATTGGCTTAGAAACTCGGAGGATGAAGCGCGTAAGAAATGGGAATGCATCATAACTGGTGAATCACAACAGAAAAATTCAGTCGTTGGCGAAGTATCAGTTTCACATGTGCCTCATTTTAGATCAGTCAGCATGAACAAGGTTCGATTTTGTGACCTGAAATTTAGGCTTGGGGCCGGGTATCTGTACTGTCATCAGGTATATTGCTTATTTGGCTCTCTTCCATATGGTTTTTGTTTTTCATGTTCATTTTGCATAGATTGTGTGGCTTTCATTTCAAAGTAAAAGCCAAAGTCATATGGTCTAATGTTATTAAAGCAATCTATGTGTTGGTTCTCATAAGACTACTTTAATTACTGCCCTTAGTTGATTCCTTTGTAGTAGGATTCCTTTTTTATATTTCATTACTATCAATGAATCACATTTGTTTCTGTCCAAAACAAAAAACTGCATTGACTTTGGAGTAATCCTCATATACACAGGGAGATTGCAAGCATACCATAGTGATTAGAGATATGAGGTTGATCCATCCTGAGGACGTACATGATCGTGTTGCTTATCCAATCGTTACATTTCAGCTTAGGACCCGAGCTCGGAAATGTGATGTCTGTAACATTTACAGGGCTAAGAAGGTTACTCTTGACGATAAGTGGGCACAGGAAAACCCGTGCTACTTTTGTGAAGACTGCTATTTTCTTCTTCACTACTCGAAAGAAGGGAACCTCCTTTACAATGATTTCGTGGTGCACGATTACTTGCAAGATTAGGTGACTAGGTTGTTTAAGAATGCTTCTCACTGATGCCCAATTCACAGATGAAAATGCCTTAAATATTCATGCTCATTGAGATTCATTCAACAGTTTTGATGATGTTGAGTTGGTTCTGTTAGTAGCCAAAATCCAGTCATCTTGGCTGGTGCCACAACTCCAGAATTAGAGGCTAAAAGTAAATGGTTACTTATTTTATTTTTTTATTTAATTTTATTTTTACTTTTTGGGGTTGGTCGTCTTGGAGAATTTGTACAATGGAGGACTCTTCTTATATTGGGTTTTTATGAAAGGAAAGGTAAATTATTTTTTAGGGATTAAAAATGTAATTTTTAATATAACTTTTTTAAATCACAATTTGAACACAAACACTATGCTCAATAATATTATGAAATGTTGTTCTACTTTAAA

mRNA sequence

ATGAAGCCTGGCTCTAGCAATGTGACGGTGAAATCACTGAGCAGTGGAAAACACGAAACTCTGCAGCATCCAACGACTGTACTTTTTGTAGAGATTTTCCATAAATCTCGCAAGATGGTGAAGACTCAAGAGTTTTTGGCCCTTGGACGACAAACGTTAGCAGAACTGAAGGACAAGATTTATTGCTCGACAGATTCGTTAATGGAAAAGGCTGGGCAGCAAGATTCGTCTGGATATTTCCTTATAGAAGATGTTTTCTGCAATGATTTGAGGAATCCTTCCGCAATAGATTATAGCAAACCTATACTTGATTGGCTTAGAAACTCGGAGGATGAAGCGCGTAAGAAATGGGAATGCATCATAACTGGTGAATCACAACAGAAAAATTCAGTCGTTGGCGAAGTATCAGTTTCACATGTGCCTCATTTTAGATCAGTCAGCATGAACAAGGTTCGATTTTGTGACCTGAAATTTAGGCTTGGGGCCGGGTATCTGTACTGTCATCAGATTGTGTGGCTTTCATTTCAAAGTAAAAGCCAAAGTCATATGGGAGATTGCAAGCATACCATAGTGATTAGAGATATGAGGTTGATCCATCCTGAGGACGTACATGATCGTGTTGCTTATCCAATCGTTACATTTCAGCTTAGGACCCGAGCTCGGAAATGTGATGTCTGTAACATTTACAGGGCTAAGAAGGTTACTCTTGACGATAAGTGGGCACAGGAAAACCCGTGCTACTTTTGTGAAGACTGCTATTTTCTTCTTCACTACTCGAAAGAAGGGAACCTCCTTTACAATGATTTCGTGGTGCACGATTACTTGCAAGATTAGGTGACTAGGTTGTTTAAGAATGCTTCTCACTGATGCCCAATTCACAGATGAAAATGCCTTAAATATTCATGCTCATTGAGATTCATTCAACAGTTTTGATGATGTTGAGTTGGTTCTGTTAGTAGCCAAAATCCAGTCATCTTGGCTGGTGCCACAACTCCAGAATTAGAGGCTAAAAGTAAATGGTTACTTATTTTATTTTTTTATTTAATTTTATTTTTACTTTTTGGGGTTGGTCGTCTTGGAGAATTTGTACAATGGAGGACTCTTCTTATATTGGGTTTTTATGAAAGGAAAGGTAAATTATTTTTTAGGGATTAAAAATGTAATTTTTAATATAACTTTTTTAAATCACAATTTGAACACAAACACTATGCTCAATAATATTATGAAATGTTGTTCTACTTTAAA

Coding sequence (CDS)

ATGAAGCCTGGCTCTAGCAATGTGACGGTGAAATCACTGAGCAGTGGAAAACACGAAACTCTGCAGCATCCAACGACTGTACTTTTTGTAGAGATTTTCCATAAATCTCGCAAGATGGTGAAGACTCAAGAGTTTTTGGCCCTTGGACGACAAACGTTAGCAGAACTGAAGGACAAGATTTATTGCTCGACAGATTCGTTAATGGAAAAGGCTGGGCAGCAAGATTCGTCTGGATATTTCCTTATAGAAGATGTTTTCTGCAATGATTTGAGGAATCCTTCCGCAATAGATTATAGCAAACCTATACTTGATTGGCTTAGAAACTCGGAGGATGAAGCGCGTAAGAAATGGGAATGCATCATAACTGGTGAATCACAACAGAAAAATTCAGTCGTTGGCGAAGTATCAGTTTCACATGTGCCTCATTTTAGATCAGTCAGCATGAACAAGGTTCGATTTTGTGACCTGAAATTTAGGCTTGGGGCCGGGTATCTGTACTGTCATCAGATTGTGTGGCTTTCATTTCAAAGTAAAAGCCAAAGTCATATGGGAGATTGCAAGCATACCATAGTGATTAGAGATATGAGGTTGATCCATCCTGAGGACGTACATGATCGTGTTGCTTATCCAATCGTTACATTTCAGCTTAGGACCCGAGCTCGGAAATGTGATGTCTGTAACATTTACAGGGCTAAGAAGGTTACTCTTGACGATAAGTGGGCACAGGAAAACCCGTGCTACTTTTGTGAAGACTGCTATTTTCTTCTTCACTACTCGAAAGAAGGGAACCTCCTTTACAATGATTTCGTGGTGCACGATTACTTGCAAGATTAG

Protein sequence

MKPGSSNVTVKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD

Homology

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BLAST of Lsi02G010240 vs. Swiss-Prot
Match: SRD2_ARATH (snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-76
Identity = 150/255 (58.82%), Postives = 181/255 (70.98%), Query Frame = 1


Query: 24  PTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDSSGYFLIE 83
           P  +L VEI++ SRK VKTQEFL LGRQ L ELKD I+C+TD +M+KAG+ D SGYFLIE
Sbjct: 140 PEVILCVEIYN-SRK-VKTQEFLVLGRQMLTELKDNIHCATDQVMQKAGKYDPSGYFLIE 199

Query: 84  DVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNS-VVGEVSVSHVPH 143
           DVF NDLRNPSA DYS PILDWL NS+DEA KKWEC++TGE Q+K   V+GE     +P 
Sbjct: 200 DVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGELQKKQKLVLGEAKSVDLPR 259

Query: 144 FRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDMRLIHPED 203
           +R+  M    FCD++FR+GA Y+YCHQ              GDCKHTIVIRDMR+ HPED
Sbjct: 260 YRTADMQSTHFCDIRFRVGASYVYCHQ--------------GDCKHTIVIRDMRMSHPED 319

Query: 204 VHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEG 263
           V +R AYPI+ F  + R +KC VC I RA KV +DDKWA EN  YFC+ C+ LLH S+EG
Sbjct: 320 VQNRAAYPIM-FWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH-SEEG 375

Query: 264 NLLYNDFVVHDYLQD 278
             L  DF V DY+ +
Sbjct: 380 P-LNCDFPVFDYVHE 375

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BLAST of Lsi02G010240 vs. Swiss-Prot
Match: SNPC3_RAT (snRNA-activating protein complex subunit 3 OS=Rattus norvegicus GN=Snapc3 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-33
Identity = 89/262 (33.97%), Postives = 127/262 (48.47%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTD--------SLMEKAGQQDS-- 86
           +L+  IF+K R+    Q  L LG Q L EL+D I C +D        +  ++A +  S  
Sbjct: 182 ILYPVIFNKHREHKPYQTVLVLGSQKLTELRDSICCVSDLQIGGEFSNAPDQAPEHISKD 241

Query: 87  ---SGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVG 146
              S +F  E  F ND R P   D S+ I++W   S D    K                 
Sbjct: 242 LYKSAFFYFEGTFYNDKRYPECRDLSRTIIEW-SESHDRGYGK----------------- 301

Query: 147 EVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIR 206
                    F++  M    F DL  +LG  YLYCHQ              GDC+H +VI 
Sbjct: 302 ---------FQTARMEDFTFNDLNIKLGFPYLYCHQ--------------GDCEHVVVIT 361

Query: 207 DMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCY 266
           D+RL+H +D  DR  YP++T +     RKC VC +Y A+ VT +D +A E+PC+FC+ C+
Sbjct: 362 DIRLVHHDDCLDRTLYPLLTKKHWLWTRKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCF 401

Query: 267 FLLHYSKEGNLLYNDFVVHDYL 276
            +LHY  EGN L  +F+ + Y+
Sbjct: 422 RMLHYDSEGNKL-GEFLAYPYV 401

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BLAST of Lsi02G010240 vs. Swiss-Prot
Match: SNPC3_BOVIN (snRNA-activating protein complex subunit 3 OS=Bos taurus GN=SNAPC3 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-33
Identity = 88/262 (33.59%), Postives = 126/262 (48.09%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTD--------SLMEKAGQQDS-- 86
           +L+  IFHK ++    Q  L LG Q L EL+D I C +D        +  ++A +  S  
Sbjct: 187 ILYPVIFHKHKEHKPYQTILVLGSQKLTELRDAICCVSDLQIGGEFSNTPDQAPEHISKD 246

Query: 87  ---SGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVG 146
              S +F  E  F ND R P   D S+ I++W   S D    K                 
Sbjct: 247 LYKSAFFYFEGTFYNDKRYPECRDLSRTIIEW-SESHDRGYGK----------------- 306

Query: 147 EVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIR 206
                    F++  M    F DL  +LG  YLYCHQ              GDC+H +VI 
Sbjct: 307 ---------FQTAKMEDFTFNDLYIKLGFPYLYCHQ--------------GDCEHVVVIT 366

Query: 207 DMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCY 266
           D+RL+H +D  DR  YP++  +     RKC VC +Y A+ VT +D +A E+PC+FC+ C+
Sbjct: 367 DIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCF 406

Query: 267 FLLHYSKEGNLLYNDFVVHDYL 276
            +LHY  EGN L  +F+ + Y+
Sbjct: 427 RMLHYDSEGNKL-GEFLAYPYV 406

[Close]

BLAST of Lsi02G010240 vs. Swiss-Prot
Match: SNPC3_MACFA (snRNA-activating protein complex subunit 3 OS=Macaca fascicularis GN=SNAPC3 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-33
Identity = 89/262 (33.97%), Postives = 126/262 (48.09%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTD--------SLMEKAGQQDS-- 86
           +L+  IFHK ++    Q  L LG Q L EL+D I C +D        +  ++A +  S  
Sbjct: 187 ILYPVIFHKHKEHKPYQTMLVLGSQKLTELRDSIRCVSDLQIGGEFSNTPDQAPEHISKD 246

Query: 87  ---SGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVG 146
              S +F  E  F ND R P   D S+ I++W   S D    K                 
Sbjct: 247 LYKSAFFYFEGTFYNDKRYPECRDLSRTIIEW-SESHDRGYGK----------------- 306

Query: 147 EVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIR 206
                    F++  M    F DL  +LG  YLYCHQ              GDC+H IVI 
Sbjct: 307 ---------FQTARMEDFTFNDLCIKLGFPYLYCHQ--------------GDCEHVIVIT 366

Query: 207 DMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCY 266
           D+RL+H +D  DR  YP++  +     RKC VC +Y A+ VT +D +A E+PC+FC+ C+
Sbjct: 367 DIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCF 406

Query: 267 FLLHYSKEGNLLYNDFVVHDYL 276
            +LHY  EGN L  +F+ + Y+
Sbjct: 427 RMLHYDSEGNKL-GEFLAYPYV 406

[Close]

BLAST of Lsi02G010240 vs. Swiss-Prot
Match: SNPC3_MOUSE (snRNA-activating protein complex subunit 3 OS=Mus musculus GN=Snapc3 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 6.9e-33
Identity = 88/262 (33.59%), Postives = 127/262 (48.47%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTD--------SLMEKAGQQDS-- 86
           +L+  IF+K ++    Q  L LG Q L EL+D I C +D        +  ++A +  S  
Sbjct: 182 ILYPVIFNKHKEHKPYQTMLVLGSQKLTELRDSICCVSDLQIGGEFSNAPDQAPEHISKD 241

Query: 87  ---SGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVG 146
              S +F  E  F ND R P   D S+ I++W   S D    K                 
Sbjct: 242 LYKSAFFYFEGTFYNDRRYPECRDLSRTIIEW-SESHDRGYGK----------------- 301

Query: 147 EVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIR 206
                    F++  M    F DL  +LG  YLYCHQ              GDC+H +VI 
Sbjct: 302 ---------FQTARMEDFTFNDLHIKLGFPYLYCHQ--------------GDCEHVVVIT 361

Query: 207 DMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCY 266
           D+RL+H +D  DR  YP++T +     RKC VC +Y A+ VT +D +A E+PC+FC+ C+
Sbjct: 362 DIRLVHHDDCLDRTLYPLLTKKHWLWTRKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCF 401

Query: 267 FLLHYSKEGNLLYNDFVVHDYL 276
            +LHY  EGN L  +F+ + Y+
Sbjct: 422 RMLHYDSEGNKL-GEFLAYPYV 401

[Close]

BLAST of Lsi02G010240 vs. TrEMBL
Match: A0A0A0M3U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G705100 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 6.7e-136
Identity = 234/268 (87.31%), Postives = 245/268 (91.42%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSLS GKHE+L HPTTVLFVE++HKSRKMVK+QE LALGRQTLAELKDKIYCSTD+LM+
Sbjct: 215 VKSLSGGKHESLHHPTTVLFVEVYHKSRKMVKSQELLALGRQTLAELKDKIYCSTDTLMQ 274

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KAGQQDSSGYFL+EDVFCNDLRNPSA DYSKPILDWLRNSEDEARKKW CIITGESQQK+
Sbjct: 275 KAGQQDSSGYFLVEDVFCNDLRNPSATDYSKPILDWLRNSEDEARKKWGCIITGESQQKS 334

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSMNK RFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 335 SVVGEVSDLHVPHFRSVSMNKARFCDLKFRLGAGYLYCHQ--------------GDCKHT 394

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKKVT+DDKWAQENPCYFC
Sbjct: 395 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTIDDKWAQENPCYFC 454

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYL+D
Sbjct: 455 EDCYFLLHYSKEGNLLYNDFVVHDYLKD 468

[Close]

BLAST of Lsi02G010240 vs. TrEMBL
Match: A0A059CDQ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00971 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.9e-99
Identity = 175/274 (63.87%), Postives = 213/274 (77.74%), Query Frame = 1


Query: 5   SSNVTVKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCST 64
           +S V VKS    ++  + +P  +L VE++H  ++ +KTQEFL LGRQ L EL+DKIYC T
Sbjct: 145 NSAVKVKSSDLQENMPVMYPEIILCVEVYHNVKRWIKTQEFLVLGRQLLTELRDKIYCLT 204

Query: 65  DSLMEKAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGE 124
           D +M+KAG+ DSSGYFLIED FCNDLR+P+AIDYS+PIL+WLRNS+DEA KKWECI  GE
Sbjct: 205 DHIMQKAGKHDSSGYFLIEDFFCNDLRDPTAIDYSEPILEWLRNSKDEALKKWECIQAGE 264

Query: 125 -SQQKNSVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHM 184
             Q++  VVG+ ++S +P F++V M K RFCDLKF+LGA YLYCHQ              
Sbjct: 265 LGQKQKDVVGDSAISQLPQFKAVEMQKTRFCDLKFQLGAAYLYCHQ-------------- 324

Query: 185 GDCKHTIVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQE 244
           GDCKHTIVIRDMRLIHPEDV  R AYPIVTFQ +TRA+KC VC IYRA KVTLDDKWA+E
Sbjct: 325 GDCKHTIVIRDMRLIHPEDVLSRAAYPIVTFQQKTRAQKCCVCKIYRATKVTLDDKWAKE 384

Query: 245 NPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           NPCYFC++CYFLLHYSK+ +LLY+DF V+DY  D
Sbjct: 385 NPCYFCDNCYFLLHYSKDSSLLYSDFSVYDYHHD 404

[Close]

BLAST of Lsi02G010240 vs. TrEMBL
Match: A0A067JYI1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16415 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.7e-97
Identity = 167/262 (63.74%), Postives = 200/262 (76.34%), Query Frame = 1


Query: 17  KHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDS 76
           +H  +Q+P  VL +E++H  R  +K QEFL LGRQTL E++DKIYC TD +M+KAGQ D 
Sbjct: 137 EHIAVQYPEVVLCIEVYHNVRNWLKIQEFLVLGRQTLTEMRDKIYCMTDQVMQKAGQHDP 196

Query: 77  SGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQK-NSVVGEV 136
           SGYFLIEDVF ND+RNPSAIDYS PI DWLRNS+D+A +KWECII+GE  QK  +VVGE 
Sbjct: 197 SGYFLIEDVFYNDMRNPSAIDYSDPIFDWLRNSKDDALRKWECIISGELHQKQKAVVGEA 256

Query: 137 SVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDM 196
           + SH+P FR   M K RFCDL+FRLGAGYL+CHQ              GDCKHT VIRDM
Sbjct: 257 TTSHLPQFRRADMQKTRFCDLRFRLGAGYLFCHQ--------------GDCKHTFVIRDM 316

Query: 197 RLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFL 256
           RLIHPEDV +R AYPIV FQL+ R +KC+VC I+RA K+T+DDKW   NPCYFC DCY+L
Sbjct: 317 RLIHPEDVQNRAAYPIVIFQLKMRMQKCNVCKIFRATKMTVDDKWTPCNPCYFCNDCYYL 376

Query: 257 LHYSKEGNLLYNDFVVHDYLQD 278
           LHYS+ G+LLY+DF  +DYL D
Sbjct: 377 LHYSENGSLLYSDFSTYDYLHD 384

[Close]

BLAST of Lsi02G010240 vs. TrEMBL
Match: D7TRZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0921g00030 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 165/249 (66.27%), Postives = 203/249 (81.53%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDSSGYFLIEDVF 86
           VL +EI+H  R  VK QEFL LGRQTL EL+D I C+TD +M+KAG+ + SGY LIEDVF
Sbjct: 8   VLCIEIYHSRRTWVKAQEFLVLGRQTLTELRDNICCATDQVMQKAGKHNPSGYILIEDVF 67

Query: 87  CNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN-SVVGEVSVSHVPHFRS 146
           CNDLR+PSAIDYSKPI DWLRNS+D+A +KWECII+G+ QQK  +++G+ ++SH+PHF++
Sbjct: 68  CNDLRDPSAIDYSKPIFDWLRNSKDDALEKWECIISGDLQQKQKALLGDPTISHLPHFKA 127

Query: 147 VSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDMRLIHPEDVHD 206
           V M+K RFCDL+FRLGAGYLYCHQ              GDC+HTIVIRDMRL HPEDV D
Sbjct: 128 VDMHKTRFCDLQFRLGAGYLYCHQ--------------GDCRHTIVIRDMRLFHPEDVGD 187

Query: 207 RVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLL 266
           R AYPI+TFQL++R +KC VC IYRA KVT+DDKWA ENPCYFC++CYFLLHYS++G+LL
Sbjct: 188 RAAYPILTFQLKSRVQKCCVCKIYRATKVTVDDKWAPENPCYFCDNCYFLLHYSEDGSLL 242

Query: 267 YNDFVVHDY 275
           Y +F V+DY
Sbjct: 248 YKEFSVYDY 242

[Close]

BLAST of Lsi02G010240 vs. TrEMBL
Match: D7T5Z1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1255g00020 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.0e-96
Identity = 165/249 (66.27%), Postives = 202/249 (81.12%), Query Frame = 1


Query: 27  VLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDSSGYFLIEDVF 86
           VL +EI+H  R  VK QEFL LGRQTL EL+D I C+TD +M+KAG+ + SGY LIEDVF
Sbjct: 8   VLCIEIYHSRRTWVKAQEFLVLGRQTLTELRDNICCATDQVMQKAGKHNPSGYILIEDVF 67

Query: 87  CNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN-SVVGEVSVSHVPHFRS 146
           CNDLR+PSAIDYSKPI DWLRNS+D+A +KWECII+GE QQK  +++G+ ++S +PHF++
Sbjct: 68  CNDLRDPSAIDYSKPIFDWLRNSKDDALEKWECIISGELQQKQKALLGDPTISRLPHFKA 127

Query: 147 VSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDMRLIHPEDVHD 206
           V M+K RFCDL+FRLGAGYLYCHQ              GDC+HTIVIRDMRL HPEDV D
Sbjct: 128 VDMHKTRFCDLQFRLGAGYLYCHQ--------------GDCRHTIVIRDMRLFHPEDVGD 187

Query: 207 RVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLL 266
           R AYPI+TFQL++R +KC VC IYRA KVT+DDKWA ENPCYFC++CYFLLHYS++G+LL
Sbjct: 188 RAAYPILTFQLKSRVQKCCVCKIYRATKVTVDDKWAPENPCYFCDNCYFLLHYSEDGSLL 242

Query: 267 YNDFVVHDY 275
           Y +F V+DY
Sbjct: 248 YKEFSVYDY 242

[Close]

BLAST of Lsi02G010240 vs. TAIR10
Match: AT1G28560.2 (AT1G28560.2 snRNA activating complex family protein)

HSP 1 Score: 287.7 bits (735), Expect = 7.5e-78
Identity = 150/255 (58.82%), Postives = 181/255 (70.98%), Query Frame = 1


Query: 24  PTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLMEKAGQQDSSGYFLIE 83
           P  +L VEI++ SRK VKTQEFL LGRQ L ELKD I+C+TD +M+KAG+ D SGYFLIE
Sbjct: 151 PEVILCVEIYN-SRK-VKTQEFLVLGRQMLTELKDNIHCATDQVMQKAGKYDPSGYFLIE 210

Query: 84  DVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNS-VVGEVSVSHVPH 143
           DVF NDLRNPSA DYS PILDWL NS+DEA KKWEC++TGE Q+K   V+GE     +P 
Sbjct: 211 DVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGELQKKQKLVLGEAKSVDLPR 270

Query: 144 FRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHTIVIRDMRLIHPED 203
           +R+  M    FCD++FR+GA Y+YCHQ              GDCKHTIVIRDMR+ HPED
Sbjct: 271 YRTADMQSTHFCDIRFRVGASYVYCHQ--------------GDCKHTIVIRDMRMSHPED 330

Query: 204 VHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEG 263
           V +R AYPI+ F  + R +KC VC I RA KV +DDKWA EN  YFC+ C+ LLH S+EG
Sbjct: 331 VQNRAAYPIM-FWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH-SEEG 386

Query: 264 NLLYNDFVVHDYLQD 278
             L  DF V DY+ +
Sbjct: 391 P-LNCDFPVFDYVHE 386

[Close]

BLAST of Lsi02G010240 vs. NCBI nr
Match: gi|659108222|ref|XP_008454083.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 2.5e-136
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSLS  KHE+L HPTTVLFVE++HKSRKMVK+QEFLALGRQTLAELKDKIYCSTD+LM+
Sbjct: 241 VKSLSGEKHESLHHPTTVLFVEVYHKSRKMVKSQEFLALGRQTLAELKDKIYCSTDALMQ 300

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KA  QDSSGYFL+EDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN
Sbjct: 301 KAELQDSSGYFLVEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 360

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSM+KVRFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 361 SVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQ--------------GDCKHT 420

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKKVTLDDKWAQENPCYFC
Sbjct: 421 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTLDDKWAQENPCYFC 480

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYLQD
Sbjct: 481 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 494

[Close]

BLAST of Lsi02G010240 vs. NCBI nr
Match: gi|659108224|ref|XP_008454084.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 2.5e-136
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSLS  KHE+L HPTTVLFVE++HKSRKMVK+QEFLALGRQTLAELKDKIYCSTD+LM+
Sbjct: 216 VKSLSGEKHESLHHPTTVLFVEVYHKSRKMVKSQEFLALGRQTLAELKDKIYCSTDALMQ 275

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KA  QDSSGYFL+EDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN
Sbjct: 276 KAELQDSSGYFLVEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 335

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSM+KVRFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 336 SVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQ--------------GDCKHT 395

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKKVTLDDKWAQENPCYFC
Sbjct: 396 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTLDDKWAQENPCYFC 455

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYLQD
Sbjct: 456 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 469

[Close]

BLAST of Lsi02G010240 vs. NCBI nr
Match: gi|778664578|ref|XP_011660317.1| (PREDICTED: snRNA-activating protein complex subunit [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 9.6e-136
Identity = 234/268 (87.31%), Postives = 245/268 (91.42%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSLS GKHE+L HPTTVLFVE++HKSRKMVK+QE LALGRQTLAELKDKIYCSTD+LM+
Sbjct: 215 VKSLSGGKHESLHHPTTVLFVEVYHKSRKMVKSQELLALGRQTLAELKDKIYCSTDTLMQ 274

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KAGQQDSSGYFL+EDVFCNDLRNPSA DYSKPILDWLRNSEDEARKKW CIITGESQQK+
Sbjct: 275 KAGQQDSSGYFLVEDVFCNDLRNPSATDYSKPILDWLRNSEDEARKKWGCIITGESQQKS 334

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSMNK RFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 335 SVVGEVSDLHVPHFRSVSMNKARFCDLKFRLGAGYLYCHQ--------------GDCKHT 394

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKKVT+DDKWAQENPCYFC
Sbjct: 395 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTIDDKWAQENPCYFC 454

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYL+D
Sbjct: 455 EDCYFLLHYSKEGNLLYNDFVVHDYLKD 468

[Close]

BLAST of Lsi02G010240 vs. NCBI nr
Match: gi|659118391|ref|XP_008459095.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo])

HSP 1 Score: 491.5 bits (1264), Expect = 9.6e-136
Identity = 235/268 (87.69%), Postives = 245/268 (91.42%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSL+ GKHE+L HP TVLFVE++HKSRKMVK+QEFLALGRQTLAELKDKIYCSTD+LM+
Sbjct: 228 VKSLNDGKHESLHHPMTVLFVEVYHKSRKMVKSQEFLALGRQTLAELKDKIYCSTDTLMQ 287

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KA QQDSSGYFL+EDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGE QQKN
Sbjct: 288 KAEQQDSSGYFLVEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGELQQKN 347

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSM+KVRFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 348 SVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQ--------------GDCKHT 407

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKK TLDDKWAQENPCYFC
Sbjct: 408 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFC 467

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYLQD
Sbjct: 468 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 481

[Close]

BLAST of Lsi02G010240 vs. NCBI nr
Match: gi|659118389|ref|XP_008459094.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis melo])

HSP 1 Score: 491.5 bits (1264), Expect = 9.6e-136
Identity = 235/268 (87.69%), Postives = 245/268 (91.42%), Query Frame = 1


Query: 10  VKSLSSGKHETLQHPTTVLFVEIFHKSRKMVKTQEFLALGRQTLAELKDKIYCSTDSLME 69
           VKSL+ GKHE+L HP TVLFVE++HKSRKMVK+QEFLALGRQTLAELKDKIYCSTD+LM+
Sbjct: 241 VKSLNDGKHESLHHPMTVLFVEVYHKSRKMVKSQEFLALGRQTLAELKDKIYCSTDTLMQ 300

Query: 70  KAGQQDSSGYFLIEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKN 129
           KA QQDSSGYFL+EDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGE QQKN
Sbjct: 301 KAEQQDSSGYFLVEDVFCNDLRNPSAIDYSKPILDWLRNSEDEARKKWECIITGELQQKN 360

Query: 130 SVVGEVSVSHVPHFRSVSMNKVRFCDLKFRLGAGYLYCHQIVWLSFQSKSQSHMGDCKHT 189
           SVVGEVS  HVPHFRSVSM+KVRFCDLKFRLGAGYLYCHQ              GDCKHT
Sbjct: 361 SVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQ--------------GDCKHT 420

Query: 190 IVIRDMRLIHPEDVHDRVAYPIVTFQLRTRARKCDVCNIYRAKKVTLDDKWAQENPCYFC 249
           IVIRDMRLIHPEDVHDR AYPIVTFQLRTRA+KCDVCNIYRAKK TLDDKWAQENPCYFC
Sbjct: 421 IVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFC 480

Query: 250 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 278
           EDCYFLLHYSKEGNLLYNDFVVHDYLQD
Sbjct: 481 EDCYFLLHYSKEGNLLYNDFVVHDYLQD 494

The following BLAST results are available for this feature:

BLAST of Lsi02G010240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRD2_ARATH	1.3e-76	58.82	snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV...	[more]
SNPC3_RAT	3.1e-33	33.97	snRNA-activating protein complex subunit 3 OS=Rattus norvegicus GN=Snapc3 PE=2 S...	[more]
SNPC3_BOVIN	5.3e-33	33.59	snRNA-activating protein complex subunit 3 OS=Bos taurus GN=SNAPC3 PE=2 SV=1	[more]
SNPC3_MACFA	5.3e-33	33.97	snRNA-activating protein complex subunit 3 OS=Macaca fascicularis GN=SNAPC3 PE=2...	[more]
SNPC3_MOUSE	6.9e-33	33.59	snRNA-activating protein complex subunit 3 OS=Mus musculus GN=Snapc3 PE=1 SV=2	[more]

BLAST of Lsi02G010240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3U8_CUCSA	6.7e-136	87.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G705100 PE=4 SV=1	[more]
A0A059CDQ0_EUCGR	2.9e-99	63.87	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00971 PE=4 SV=1	[more]
A0A067JYI1_JATCU	4.7e-97	63.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16415 PE=4 SV=1	[more]
D7TRZ9_VITVI	1.0e-96	66.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0921g00030 PE=4 SV=...	[more]
D7T5Z1_VITVI	4.0e-96	66.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1255g00020 PE=4 SV=...	[more]

BLAST of Lsi02G010240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28560.2	7.5e-78	58.82	snRNA activating complex family protein	[more]

BLAST of Lsi02G010240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108222\|ref\|XP_008454083.1\|	2.5e-136	88.43	PREDICTED: snRNA-activating protein complex subunit-like isoform X1 [Cucumis mel...	[more]
gi\|659108224\|ref\|XP_008454084.1\|	2.5e-136	88.43	PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis mel...	[more]
gi\|778664578\|ref\|XP_011660317.1\|	9.6e-136	87.31	PREDICTED: snRNA-activating protein complex subunit [Cucumis sativus]	[more]
gi\|659118391\|ref\|XP_008459095.1\|	9.6e-136	87.69	PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis mel...	[more]
gi\|659118389\|ref\|XP_008459094.1\|	9.6e-136	87.69	PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis mel...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022042	snRNA-activating_su3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010240.1	Lsi02G010240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022042	snRNA-activating protein complex, subunit 3	PANTHER	PTHR13421	FAMILY NOT NAMED	coord: 5..110 score: 9.5E-105coord: 135..276 score: 9.5E
IPR022042	snRNA-activating protein complex, subunit 3	PFAM	PF12251	zf-SNAP50_C	coord: 43..169 score: 4.6E-30coord: 182..274 score: 7.9
None	No IPR available	PANTHER	PTHR13421:SF16	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	coord: 5..110 score: 9.5E-105coord: 135..276 score: 9.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G010240	Silver-seed gourd	carlsiB362
Lsi02G010240	Silver-seed gourd	carlsiB408
Lsi02G010240	Cucumber (Chinese Long) v3	cuclsiB026
Lsi02G010240	Cucumber (Chinese Long) v3	cuclsiB034
Lsi02G010240	Watermelon (97103) v2	lsiwmbB153
Lsi02G010240	Wax gourd	lsiwgoB255
Lsi02G010240	Cucumber (Gy14) v1	cgylsiB385
Lsi02G010240	Cucumber (Gy14) v1	cgylsiB386
Lsi02G010240	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G010240	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G010240	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G010240	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G010240	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G010240	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G010240	Wild cucumber (PI 183967)	cpilsiB026
Lsi02G010240	Wild cucumber (PI 183967)	cpilsiB034
Lsi02G010240	Cucumber (Chinese Long) v2	culsiB033
Lsi02G010240	Cucumber (Chinese Long) v2	culsiB026
Lsi02G010240	Melon (DHL92) v3.5.1	lsimeB175
Lsi02G010240	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G010240	Watermelon (97103) v1	lsiwmB202
Lsi02G010240	Cucumber (Gy14) v2	cgyblsiB022
Lsi02G010240	Cucumber (Gy14) v2	cgyblsiB030
Lsi02G010240	Melon (DHL92) v3.6.1	lsimedB185