Lsi02G009990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G009990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 10130429 .. 10134093 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTAATTGAAACAATTTTCTTTATTTGAAATTGATTATATTTTTAGCATTTTTTCCTTTTTCTTTCTTTTGAAAAACCAATCCAAACATACTAAACCTTCTAATTTGCCATTATAGTTTCTTCAATTTTAGTGAAAAAGTGAAGAGAGCTTTTATCTTCTGACACACTCGCTCAAGAAACTGGTGATGAAAGAGTTTTTCATCTTCTTTACTCTTTTTTCCTTATCCAGAGTGATTTGTTACTCCTGTATCTATTGACGTTGTTCTCTGTATTGTGTTAGTGGGTTATCGTTTTTCTTAAAATAAAAAAAAGTGGAGAGAGGAGAGAGATTAATTTTAAGGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCACTGTCTATCAACGATAGATTGCGATAGACTTCTATCGCTCTTCGTAAATAGTTTAATAACCCTAAATTTTATCTAAACAAACTTATCTTATTTATGGAAGAGTGCAAATGAGGGGATTCTAAAATCAGAAATTCTCAAAATTTAACCTAATTGAAGGATTGTGATAAGTGGGGAGAGAAGCTTATGAAGTAATTCTTCAACTAAATGATGCCTCTTTCTATCATTTCCATTCTCCCAAGTTTTTTGTTTTCAGTAAAAAGGACTAAAAAAGTCTTGTTTATTATTCATCATAAGTATTAATGGATTAAAATTTTGACTATATGATTCTCCTTTCCATCTAATAAAATAAGATCAATTTTTTTATTTGATTATTTTCTACACTATTCTGCCTTCTTTCTCCAATGTTATTGAAAAAAAAAAACTTAAAATCATATCTCGAGTCTCACTATTCTTTCTAGACAATACTCTCATTTAAGAGACTTTAATTGTTATCGATAAAATTCTTGATCGTCACAAAAGTTTTTCTTTAGTTTGTATCCCTTAGTATATTCAGAGAGTTAAAATGATCATACGTGTGTAACATTCAAGTTCATGAGAGATACATAAATGAATCAAAATCATGTCTGAATGAGAGGAGATCATCAGACTATGAACATAGTTCACATAAGCTTAAAAGAATTGATAGTTATTACTTATACCAAGAAGGTGAATCTTTCTTTTCAGTGACTCAATCATAGAAACTCCAAAACTAAGGGTTTGGAACAATTTTATGTTAGATGACCTCCTAGAAGTTTTTTTAAGAAGCATGCGAGTGACGGGACAAAACATGCTAAGAAGACTCATATTGGTTAGTTTAAGACAAGTAGATGACATAGTCAGATCACAGAAAAATGTCGGGGCCATCAAGTGTCGAACCTGGATTATGAATTCTGGGACTGAGATGTATTAACGCATGTTATCATAGTTTTCTTTCTTAAACCAAGTTAGGAAATTATCTTTAGAAATAATGTGTTTTTACCAAAATTTGTTGGAACTATTATTATAACCATGAATGAACTCTTGATGTTCATGAAAAGGTTGAACTTGCTTTGAAAATTGGACAAAGAGAACAATGGTTAAGAATTGAGAGAATAAGTAGTGGCACACCTTTAAACTTATAATTATGGCTTAAGCCTTAAGGCTTTGAGGACTTTTTCTTTTTCATATCATAAAATGCAATATAAACTCTACTGCTCATACTGTTACTGATTAAACACCCATCATTCAAGGGTTTGAGACCTTTTGTTCTTAGTCCCCTCCTTTACCTGTTTTAATTTGTCAAGAAAAGGTTTGTGTTTCATATTCTAATTTTTCATTTTTGATAATATACGAGTTGGGAGAATCGAACATCTGACTTCACAAGATCAAAATTTATGCAGTTAAACTACGTTGATGTTGGCATTTCGTAATCTAATAATTCACGTACTCTAATTTGTGTTAAAAGTCTTATTTTACATATTGATAACAAACATTGTGAGCTATTTATCGAACTTATTTATTTATAGTTGTAACGTCCGAGTTTAGGAGATGTACATGAATGAACTGAAATTACATCTAAATGAGAGGGATTATGAAGATATAAAAATATGGTTAAGAAAAGCTTAAATTAAAATTACTACCTATACAAACAAGGTGCACATTCTTTTTTGGTGATTCAATCATAGAAACTCCAAAGCTAAGCGTGCTTAGTTTGGAGCGGTTCTATGATGGATGACCTTCTATAAAACATGTTGAAAGACGACCCGTGTTGGTTTGTGAAATAGTCTTTACTCTTAGAAGTAGTTTAGGTCTTCAAGACAGACAATTCGAATTCTAAATTTTAGTCTGAATTCTGAGCCTAGGAAATGGATTTTTTAAGCTTGAGATCAAAGAGATAATTTAGAGACAAGATATGGCCACCAAGCCTAATATGCTTTCTTGTCCTTTTTTATAGTTTTGTTATGAATTTTAATCGGAGAATTTATGCTTATTTCATGAACATTTATAGCTAATTCATGTTCTTAGAGATTAATGTACCCATTAATTTTTATGGTTTGATTAATTGAATGTTTTATTAATACTTAGTTTTCCATTCATGTAATTACTTACTTATTGTTCTAAGTTTGCTTGAGATTCTATTTTGCTTAGGAGAGACAGTTATGACATACTTGAATTATGGCTGAAGCGATCTTAATGTAGTGATAATTGACATGCATTTCCTTCCTTAGATTCGATTTTCCATCTCTACGATTGTTGTAATAAAAAAAAAACTTAATTTATGGAATATTTGTATGTTGTTATTTGTATCATGTTGAATTAAACCATAAATCAATGGGTAAATTAACTCCATAAAGCACGTTTTTCATAGATTTTTTTTTTCTCATTTTCATTAATTTTCTTAGTTTAGTCCAAGTTGATCACACTTTCTTCTAAAAAAAACAATCAAACTTTTGTATTTGCGGTACTTAAATGACTGGGTAACCAAATCTAGATCCTTGACACATATACTTGTTGTTAGACGTTTAAAGATGCACCCCACCGGTATTTATTTATACCTCTAACCTCTAGGGAAGAAGATTATGTCAATTACCATTATTCTAAATTTATTTTGGCTACCCTACCTTTAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAGAAATTTTTAGAATTTATTTATACCTTATTTTATTCCAAAGAATAAAAAAAACAAAATAAAAAACTAATAATCTAGAAATAATAGAATAATTCATTAATTAATTATATATATGTCGATAGATAAATTAGTGAATTGAATTTGCTCAATAAAGCAGAATAGCATTATAATGAGAAATTCAGAAGTGTTAATCGCGCGTGGTATACACGCGCTAAATACAATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTCCACCTTCTCTTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTTCTTTACATTTCATTTAATTTTCATTTACTTTCTGTTTCGATTAACAACGTTCCCTTTTTCAACCCATCACCCCATTTTACGTTCTTCCTTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCATTCCTCTCCGCCACTTCCATTCAATTTCTGGTAACATTCTCTTTTCTTTTTGCTATTTTCCTATCTGGGTTTTGCTTGGATTGATGCAATCTCTTTTCCCTTTTCCTTCTTTATGA

mRNA sequence

ATGAAAGTGTTAATCGCGCGTGGTATACACGCGCTAAATACAATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTCCACCTTCTCTTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTTCTTTACATTTCATTTAATTTTCATTTACTTTCTGTTTCGATTAACAACGTTCCCTTTTTCAACCCATCACCCCATTTTACGTTCTTCCTTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCATTCCTCTCCGCCACTTCCATTCAATTTCTGGTAACATTCTCTTTTCTTTTTGCTATTTTCCTATCTGGGTTTTGCTTGGATTGATGCAATCTCTTTTCCCTTTTCCTTCTTTATGA

Coding sequence (CDS)

ATGAAAGTGTTAATCGCGCGTGGTATACACGCGCTAAATACAATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTCCACCTTCTCTTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTTCTTTACATTTCATTTAATTTTCATTTACTTTCTGTTTCGATTAACAACGTTCCCTTTTTCAACCCATCACCCCATTTTACGTTCTTCCTTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCATTCCTCTCCGCCACTTCCATTCAATTTCTGGTAACATTCTCTTTTCTTTTTGCTATTTTCCTATCTGGGTTTTGCTTGGATTGATGCAATCTCTTTTCCCTTTTCCTTCTTTATGA

Protein sequence

MKVLIARGIHALNTMWTNRQLPAPSSAPNRTPPSLSLSFFLSFFLSFLYISFNFHLLSVSINNVPFFNPSPHFTFFLFSFSLIFSHTHIPIFVLSSNFIPLRHFHSISGNILFSFCYFPIWVLLGLMQSLFPFPSL

Homology

[Close]

BLAST of Lsi02G009990 vs. TrEMBL
Match: A0A0A0M194_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 15  MWTNRQLPAPSSAPNRTPPSLSLSFFLSFFLSFLYISFNFHLLSVSINNVPFFNPSPHFT 74
           MWTNRQLPAPSSAPNRT PS SLS       SFLY    FHLLS   +++P   P     
Sbjct: 1   MWTNRQLPAPSSAPNRTSPSSSLS------PSFLY----FHLLS---DSIPLTTPP---- 60

Query: 75  FFLFSFSLIFS---HTH-IPIFVLSSNFIPLRHFHSISGNILFSFCYF 119
             +F+FSLIFS   H H    FVLSS+     +F+S S  + F+ CYF
Sbjct: 61  --IFTFSLIFSQYPHPHFFFFFVLSSS-----NFNS-SPPLPFNSCYF 83

[Close]

BLAST of Lsi02G009990 vs. NCBI nr
Match: gi|700210870|gb|KGN65966.1| (hypothetical protein Csa_1G554530 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 15  MWTNRQLPAPSSAPNRTPPSLSLSFFLSFFLSFLYISFNFHLLSVSINNVPFFNPSPHFT 74
           MWTNRQLPAPSSAPNRT PS SLS       SFLY    FHLLS   +++P   P     
Sbjct: 1   MWTNRQLPAPSSAPNRTSPSSSLS------PSFLY----FHLLS---DSIPLTTPP---- 60

Query: 75  FFLFSFSLIFS---HTH-IPIFVLSSNFIPLRHFHSISGNILFSFCYF 119
             +F+FSLIFS   H H    FVLSS+     +F+S S  + F+ CYF
Sbjct: 61  --IFTFSLIFSQYPHPHFFFFFVLSSS-----NFNS-SPPLPFNSCYF 83

The following BLAST results are available for this feature:

BLAST of Lsi02G009990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G009990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M194_CUCSA	2.5e-06	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554530 PE=4 SV=1	[more]

BLAST of Lsi02G009990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G009990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210870\|gb\|KGN65966.1\|	3.5e-06	50.00	hypothetical protein Csa_1G554530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G009990.1	Lsi02G009990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G009990	Silver-seed gourd	carlsiB362
Lsi02G009990	Silver-seed gourd	carlsiB408
Lsi02G009990	Cucumber (Chinese Long) v3	cuclsiB023
Lsi02G009990	Watermelon (97103) v2	lsiwmbB153
Lsi02G009990	Wax gourd	lsiwgoB255
Lsi02G009990	Cucumber (Gy14) v1	cgylsiB278
Lsi02G009990	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G009990	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G009990	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G009990	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G009990	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G009990	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G009990	Wild cucumber (PI 183967)	cpilsiB022
Lsi02G009990	Cucumber (Chinese Long) v2	culsiB023
Lsi02G009990	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G009990	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G009990	Watermelon (97103) v1	lsiwmB202
Lsi02G009990	Cucumber (Gy14) v2	cgyblsiB019
Lsi02G009990	Melon (DHL92) v3.6.1	lsimedB189