Lsi02G007920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G007920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor TCP4
Location	chr02 : 7310750 .. 7311355 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGTTTGATTTTTCTTTCTTTGGAAGTTTTGTTTTCATTATTTATACTTTTATTACAGTTGCTGGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG

mRNA sequence

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG

Coding sequence (CDS)

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG

Protein sequence

MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

Homology

[Close]

BLAST of Lsi02G007920 vs. Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  A
Sbjct: 48  GRKDRH-------SKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 107

Query: 79  KSAIDALSR 88
           KSAID L++
Sbjct: 108 KSAIDDLAQ 109

[Close]

BLAST of Lsi02G007920 vs. Swiss-Prot
Match: TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-14
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 19 GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
          GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 28 GRKDRH-------SKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 87

Query: 79 KSAIDAL 86
          K+AID L
Sbjct: 88 KTAIDKL 87

[Close]

BLAST of Lsi02G007920 vs. Swiss-Prot
Match: PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica GN=PCF8 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 11  EDKKTAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDR 70
           E   TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+
Sbjct: 26  ESAATAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQ 85

Query: 71  STEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQ 120
            ++AI+WL++ A +AIDAL          S   SF+ P+ A+S P  ++   +
Sbjct: 86  PSKAIEWLIRAAAAAIDAL---------PSLDCSFALPAAASSPPPPAADDAE 129

[Close]

BLAST of Lsi02G007920 vs. Swiss-Prot
Match: PCF8_ORYSJ (Transcription factor PCF8 OS=Oryza sativa subsp. japonica GN=PCF8 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 15  TAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEA 74
           TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+ ++A
Sbjct: 30  TAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKA 89

Query: 75  IDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQ 120
           I+WL++ A +AIDAL          S   SF+ P+ A+S P  ++   +
Sbjct: 90  IEWLIRAAAAAIDAL---------PSLDCSFALPAAASSPPPPAADDAE 129

[Close]

BLAST of Lsi02G007920 vs. Swiss-Prot
Match: PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T++G R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++NA
Sbjct: 212 GRKDRH-------SKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNA 271

Query: 79  KSAIDAL 86
           K AID L
Sbjct: 272 KDAIDKL 271

[Close]

BLAST of Lsi02G007920 vs. TrEMBL
Match: A0A0A0LUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077150 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 128/172 (74.42%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 7   SLNDEDKKTAKLGRRDRRLRSSA----GAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRL 66
           SL+D DK T K+ RR+RRL S+A    G GKVYTSKGLRARRLRLSAPTAI+FYD+QDRL
Sbjct: 3   SLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRL 62

Query: 67  GCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP---SMAASVPSSSSSQLQ 126
           GC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS P   S ++S  SSSSSQ Q
Sbjct: 63  GCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQ 122

Query: 127 SYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           SYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Sbjct: 123 SYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of Lsi02G007920 vs. TrEMBL
Match: D6MK40_9ASPA (Transcription factor (Fragment) OS=Lycoris longituba PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KGLR RR+RLSA TAI+FYDVQDRLGCDR ++A+DWL++NA
Sbjct: 13  GRKDRH-------SKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGCDRPSKAVDWLIKNA 72

Query: 79  KSAIDALS-----RPLETEDGESRKQSFSFP--SMAASVPSSSSSQLQSYPLENFSQKGN 138
           K+AID L       P  + D + ++ S   P  +  A+ P +SSS          S   +
Sbjct: 73  KAAIDQLDELPPWEPNSSADFQEKQTSVHEPISTSTATFPINSSSYPPDLLSRTSSHAQD 132

Query: 139 LSVFGPMILNATPEEFSG 150
           L +     L+ TP+ FSG
Sbjct: 133 LRLSLQSFLDTTPDIFSG 143

[Close]

BLAST of Lsi02G007920 vs. TrEMBL
Match: M5WPC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024383mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS 87
           KVYTSKG R RR RLSAPTAI+FYDVQDRLG DR ++AIDWL++ AK+AI+ALS
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALS 171

[Close]

BLAST of Lsi02G007920 vs. TrEMBL
Match: A0A0A0KF06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G156050 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPL 90
           KVYTS+GLR RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AKSAID LS  L
Sbjct: 52  KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADL 108

[Close]

BLAST of Lsi02G007920 vs. TrEMBL
Match: M0SJF1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 19 GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
          GR+DR         KVYT+KGLR RR+RLSA TAI+FYDVQDRLG DR ++A+DWL+QNA
Sbjct: 35 GRKDRH-------SKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIQNA 94

Query: 79 KSAIDALS 87
          K+AI+ L+
Sbjct: 95 KAAIEQLA 95

[Close]

BLAST of Lsi02G007920 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  A
Sbjct: 48  GRKDRH-------SKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 107

Query: 79  KSAIDALSR 88
           KSAID L++
Sbjct: 108 KSAIDDLAQ 109

[Close]

BLAST of Lsi02G007920 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-15
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 19 GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
          GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 28 GRKDRH-------SKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 87

Query: 79 KSAIDAL 86
          K+AID L
Sbjct: 88 KTAIDKL 87

[Close]

BLAST of Lsi02G007920 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 44  GRKDRH-------SKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 103

Query: 79  KSAIDALS 87
           K++ID L+
Sbjct: 104 KTSIDELA 104

[Close]

BLAST of Lsi02G007920 vs. TAIR10
Match: AT3G02150.2 (AT3G02150.2 plastid transcription factor 1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 14  KTAKLGRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDW 73
           K  ++ R  R         KV T +GLR RR+RLS PTAI+ YD+Q+RLG D+ ++A+DW
Sbjct: 61  KDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDW 120

Query: 74  LLQNAKSAIDAL 86
           LL  AK  ID L
Sbjct: 121 LLDAAKEEIDEL 132

[Close]

BLAST of Lsi02G007920 vs. TAIR10
Match: AT5G60970.1 (AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETE 92
           KV T +GLR RR+RLS PTAI+ YD+QDRLG  + ++ IDWLL+ AK  +D L  PL+  
Sbjct: 69  KVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLP-PLQFP 128

Query: 93  DGESRKQSFSFPSMAASVPSSSSSQLQSYPLENFSQKGNLSVFG 137
            G ++         +    S SS+   ++P  N     N  + G
Sbjct: 129 HGFNQMYPNLIFGNSGFGESPSSTTSTTFPGTNLGFLENWDLGG 171

[Close]

BLAST of Lsi02G007920 vs. NCBI nr
Match: gi|778658856|ref|XP_011653401.1| (PREDICTED: transcription factor PCF8-like [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 2.4e-60
Identity = 128/172 (74.42%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 7   SLNDEDKKTAKLGRRDRRLRSSA----GAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRL 66
           SL+D DK T K+ RR+RRL S+A    G GKVYTSKGLRARRLRLSAPTAI+FYD+QDRL
Sbjct: 3   SLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRL 62

Query: 67  GCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP---SMAASVPSSSSSQLQ 126
           GC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS P   S ++S  SSSSSQ Q
Sbjct: 63  GCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQ 122

Query: 127 SYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           SYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Sbjct: 123 SYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of Lsi02G007920 vs. NCBI nr
Match: gi|659068152|ref|XP_008443015.1| (PREDICTED: transcription factor TCP10-like [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 3.1e-60
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 7   SLNDEDKKTAKLGRRDRRLRSSA--GAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGC 66
           SL+D DKK AK+GRR+RRL SSA  GAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC
Sbjct: 3   SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGC 62

Query: 67  DRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPL 126
            R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P     VP SSSSSQ QSYPL
Sbjct: 63  GRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPL 122

Query: 127 ENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           +NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Sbjct: 123 QNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of Lsi02G007920 vs. NCBI nr
Match: gi|645237458|ref|XP_008225215.1| (PREDICTED: transcription factor TCP4-like [Prunus mume])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS 87
           KVYTSKG R RR RLSAPTAI+FYDVQDRLG DR ++AIDWL++ AK+AI+ALS
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALS 171

[Close]

BLAST of Lsi02G007920 vs. NCBI nr
Match: gi|595911406|ref|XP_007214360.1| (hypothetical protein PRUPE_ppb024383mg [Prunus persica])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALS 87
           KVYTSKG R RR RLSAPTAI+FYDVQDRLG DR ++AIDWL++ AK+AI+ALS
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALS 171

[Close]

BLAST of Lsi02G007920 vs. NCBI nr
Match: gi|700191773|gb|KGN46977.1| (hypothetical protein Csa_6G156050 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 33  KVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPL 90
           KVYTS+GLR RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ AKSAID LS  L
Sbjct: 52  KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADL 108

The following BLAST results are available for this feature:

BLAST of Lsi02G007920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP3_ARATH	3.4e-14	60.87	Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1	[more]
TCP10_ARATH	7.5e-14	61.19	Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1	[more]
PCF8_ORYSI	1.7e-13	44.25	Transcription factor PCF8 OS=Oryza sativa subsp. indica GN=PCF8 PE=3 SV=1	[more]
PCF8_ORYSJ	2.2e-13	44.95	Transcription factor PCF8 OS=Oryza sativa subsp. japonica GN=PCF8 PE=2 SV=1	[more]
PCF5_ORYSI	3.7e-13	59.70	Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1	[more]

BLAST of Lsi02G007920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP1_CUCSA	1.7e-60	74.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077150 PE=4 SV=1	[more]
D6MK40_9ASPA	1.6e-15	43.48	Transcription factor (Fragment) OS=Lycoris longituba PE=2 SV=1	[more]
M5WPC7_PRUPE	9.0e-14	75.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024383mg PE=4 SV=1	[more]
A0A0A0KF06_CUCSA	1.5e-13	71.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G156050 PE=4 SV=1	[more]
M0SJF1_MUSAM	1.5e-13	63.24	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of Lsi02G007920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53230.1	1.9e-15	60.87	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT2G31070.1	4.2e-15	61.19	TCP domain protein 10	[more]
AT3G15030.1	6.1e-14	57.35	TCP family transcription factor 4	[more]
AT3G02150.2	1.7e-11	48.61	plastid transcription factor 1	[more]
AT5G60970.1	1.4e-10	39.42	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]

BLAST of Lsi02G007920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658856\|ref\|XP_011653401.1\|	2.4e-60	74.42	PREDICTED: transcription factor PCF8-like [Cucumis sativus]	[more]
gi\|659068152\|ref\|XP_008443015.1\|	3.1e-60	77.38	PREDICTED: transcription factor TCP10-like [Cucumis melo]	[more]
gi\|645237458\|ref\|XP_008225215.1\|	1.3e-13	75.93	PREDICTED: transcription factor TCP4-like [Prunus mume]	[more]
gi\|595911406\|ref\|XP_007214360.1\|	1.3e-13	75.93	hypothetical protein PRUPE_ppb024383mg [Prunus persica]	[more]
gi\|700191773\|gb\|KGN46977.1\|	2.2e-13	71.93	hypothetical protein Csa_6G156050 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G007920.1	Lsi02G007920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 33..126 score: 4.3
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 20..85 score: 22
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 33..85 score: 4.0
None	No IPR available	PANTHER	PTHR31072:SF3	TRANSCRIPTION FACTOR TCP10-RELATED	coord: 33..85 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G007920	Cucumber (Gy14) v2	cgyblsiB252
Lsi02G007920	Cucumber (Gy14) v2	cgyblsiB401
Lsi02G007920	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G007920	Melon (DHL92) v3.6.1	lsimedB239
Lsi02G007920	Silver-seed gourd	carlsiB135
Lsi02G007920	Silver-seed gourd	carlsiB497
Lsi02G007920	Silver-seed gourd	carlsiB586
Lsi02G007920	Silver-seed gourd	carlsiB735
Lsi02G007920	Silver-seed gourd	carlsiB866
Lsi02G007920	Cucumber (Chinese Long) v3	cuclsiB465
Lsi02G007920	Watermelon (97103) v2	lsiwmbB154
Lsi02G007920	Watermelon (97103) v2	lsiwmbB169
Lsi02G007920	Watermelon (97103) v2	lsiwmbB181
Lsi02G007920	Wax gourd	lsiwgoB229
Lsi02G007920	Wax gourd	lsiwgoB234
Lsi02G007920	Wax gourd	lsiwgoB254
Lsi02G007920	Wax gourd	lsiwgoB276
Lsi02G007920	Bottle gourd (USVL1VR-Ls)	lsilsiB036
Lsi02G007920	Bottle gourd (USVL1VR-Ls)	lsilsiB066
Lsi02G007920	Bottle gourd (USVL1VR-Ls)	lsilsiB105
Lsi02G007920	Cucumber (Gy14) v1	cgylsiB023
Lsi02G007920	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G007920	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G007920	Cucurbita maxima (Rimu)	cmalsiB606
Lsi02G007920	Cucurbita maxima (Rimu)	cmalsiB796
Lsi02G007920	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G007920	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G007920	Cucurbita moschata (Rifu)	cmolsiB593
Lsi02G007920	Cucurbita moschata (Rifu)	cmolsiB783
Lsi02G007920	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G007920	Cucurbita pepo (Zucchini)	cpelsiB058
Lsi02G007920	Cucurbita pepo (Zucchini)	cpelsiB402
Lsi02G007920	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G007920	Wild cucumber (PI 183967)	cpilsiB444
Lsi02G007920	Cucumber (Chinese Long) v2	culsiB438
Lsi02G007920	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G007920	Melon (DHL92) v3.5.1	lsimeB228
Lsi02G007920	Watermelon (Charleston Gray)	lsiwcgB170
Lsi02G007920	Watermelon (Charleston Gray)	lsiwcgB188
Lsi02G007920	Watermelon (97103) v1	lsiwmB188
Lsi02G007920	Watermelon (97103) v1	lsiwmB200