Lsi02G006940 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G006940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCalcium-binding protein PBP1
Locationchr02 : 6200704 .. 6201057 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

mRNA sequence

ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

Coding sequence (CDS)

ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

Protein sequence

MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRKK
Homology
[Close]
BLAST of Lsi02G006940 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELM 69
           F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
           +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]
BLAST of Lsi02G006940 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMW 69
           ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 70  MVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST 104
           MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAET 116

[Close]
BLAST of Lsi02G006940 vs. Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-09
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           G   + F DF   M +K+  K   +E+   F L  D E G I+ ++L++    LG  L D
Sbjct: 80  GTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTD 139

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMIKLS 95
           +EL  M+ E D DGDG ++E EF  +M K S
Sbjct: 140 EELQEMIDEADRDGDGEVNEEEFLRIMKKTS 170

[Close]
BLAST of Lsi02G006940 vs. Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1 

Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           G+  + F++F   M  K+G +   +E+   F L  D + G IT ++L++    LG  L D
Sbjct: 56  GSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTD 115

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMIKLS 95
           +E+  M+ E D DGDG ++E EF  +M K S
Sbjct: 116 EEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146

[Close]
BLAST of Lsi02G006940 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           G   + F DF   M +K+  K   +E+   F L  D E G I+ ++L++    LG  L D
Sbjct: 80  GTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSD 139

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMIKLS 95
           +EL  M+ E D DGDG ++E EF  +M K S
Sbjct: 140 EELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]
BLAST of Lsi02G006940 vs. TrEMBL
Match: A0A0A0LV00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071800 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.6e-46
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = 1 

Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 6   SGKDVVLFKDFFPEMLEKLGAKGFIKELRYGFRLLMDKEKGVITAESLRKNMRFFGLVLE 65

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSH D+KF K
Sbjct: 66  DEEVMWMVKEGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHSDRKFTK 119

[Close]
BLAST of Lsi02G006940 vs. TrEMBL
Match: A0A067GJU9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033591mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL- 60
           M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD++KG+IT ESL+K    LGL 
Sbjct: 1   MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ 60

Query: 61  ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLF 106
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  S+ LF
Sbjct: 61  DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106

[Close]
BLAST of Lsi02G006940 vs. TrEMBL
Match: V4TPH6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017223mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-28
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL- 60
           M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD+ KG+IT ESL+K    LGL 
Sbjct: 1   MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEGKGLITFESLKKNSALLGLQ 60

Query: 61  ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLF 106
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  S+ LF
Sbjct: 61  DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106

[Close]
BLAST of Lsi02G006940 vs. TrEMBL
Match: B9SFE8_RICCO (Ccd1, putative OS=Ricinus communis GN=RCOM_1096900 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-27
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL-IL 62
           +  D V F+DFFP MVEKLG  GFMKEL +GF LLMD+EKGVIT ESL++    LGL  +
Sbjct: 2   ASRDGVIFEDFFPAMVEKLGADGFMKELCNGFRLLMDREKGVITFESLKRNANLLGLQDM 61

Query: 63  EDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
            DDE+M M+REGDLDGDGAL+E EFC LM +LSPG M  S
Sbjct: 62  SDDEVMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMRTS 101

[Close]
BLAST of Lsi02G006940 vs. TrEMBL
Match: I1M2E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G248200 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-26
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           M S  + V F+D+FP M+EKLG +GFMKEL +GF LLMD+EK VIT ESL+K    LGL 
Sbjct: 1   MASKKNTVVFEDYFPAMMEKLGTEGFMKELTNGFQLLMDREKKVITFESLKKNSALLGLE 60

Query: 61  -LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQS 109
            + DDEL  M+REGDLDGDGAL E EFC LM +LSP  M+ S  L  ++
Sbjct: 61  GMNDDELRCMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKELLEEA 109

[Close]
BLAST of Lsi02G006940 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELM 69
           F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
           +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]
BLAST of Lsi02G006940 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMW 69
           ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 70  MVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST 104
           MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAET 116

[Close]
BLAST of Lsi02G006940 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-19
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 1 

Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELM 69
           F DF P M   LG +G + EL +GF LLMD+EKGVIT ESLR+     LGL  L D+++ 
Sbjct: 19  FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL 105
            M++EGD D DGAL++ EFC+LM +LSP  M  S  L
Sbjct: 79  CMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCL 115

[Close]
BLAST of Lsi02G006940 vs. TAIR10
Match: AT5G37780.3 (AT5G37780.3 calmodulin 1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1 

Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D
Sbjct: 86  GNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD 145

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMI 92
           +E+  M+RE D+DGDG ++  EF  +M+
Sbjct: 146 EEVEEMIREADVDGDGQINYEEFVKIMM 173

[Close]
BLAST of Lsi02G006940 vs. TAIR10
Match: AT1G66410.2 (AT1G66410.2 calmodulin 4)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1 

Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D
Sbjct: 70  GNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD 129

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMI 92
           +E+  M+RE D+DGDG ++  EF  +M+
Sbjct: 130 EEVEEMIREADVDGDGQINYEEFVKIMM 157

[Close]
BLAST of Lsi02G006940 vs. NCBI nr
Match: gi|778664928|ref|XP_011648443.1| (PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-46
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = 1 

Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 6   SGKDVVLFKDFFPEMLEKLGAKGFIKELRYGFRLLMDKEKGVITAESLRKNMRFFGLVLE 65

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSH D+KF K
Sbjct: 66  DEEVMWMVKEGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHSDRKFTK 119

[Close]
BLAST of Lsi02G006940 vs. NCBI nr
Match: gi|568827153|ref|XP_006467931.1| (PREDICTED: calcium-binding protein PBP1 [Citrus sinensis])

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-28
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL- 60
           M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD++KG+IT ESL+K    LGL 
Sbjct: 1   MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ 60

Query: 61  ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLF 106
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  S+ LF
Sbjct: 61  DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106

[Close]
BLAST of Lsi02G006940 vs. NCBI nr
Match: gi|567913729|ref|XP_006449178.1| (hypothetical protein CICLE_v10017223mg [Citrus clementina])

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL- 60
           M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD+ KG+IT ESL+K    LGL 
Sbjct: 1   MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEGKGLITFESLKKNSALLGLQ 60

Query: 61  ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLF 106
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  S+ LF
Sbjct: 61  DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106

[Close]
BLAST of Lsi02G006940 vs. NCBI nr
Match: gi|255567475|ref|XP_002524717.1| (PREDICTED: calcium-binding protein PBP1 [Ricinus communis])

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-27
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL-IL 62
           +  D V F+DFFP MVEKLG  GFMKEL +GF LLMD+EKGVIT ESL++    LGL  +
Sbjct: 2   ASRDGVIFEDFFPAMVEKLGADGFMKELCNGFRLLMDREKGVITFESLKRNANLLGLQDM 61

Query: 63  EDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
            DDE+M M+REGDLDGDGAL+E EFC LM +LSPG M  S
Sbjct: 62  SDDEVMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMRTS 101

[Close]
BLAST of Lsi02G006940 vs. NCBI nr
Match: gi|1012249710|ref|XP_015943255.1| (PREDICTED: calcium-binding protein PBP1-like [Arachis duranensis])

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-27
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           MGS  + V F+D+FP MVEKLG +GFMKEL +GF LLMD+EK VIT ESL++    LGL 
Sbjct: 1   MGSKRNTVVFEDYFPAMVEKLGTEGFMKELTNGFQLLMDREKKVITFESLKRNSALLGLE 60

Query: 61  -LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQS 109
            + DDE+M M+REGDLDGDGAL E EFC LM +LSP  M+ S  L  ++
Sbjct: 61  GMSDDEIMSMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKQLLEEA 109

The following BLAST results are available for this feature:
BLAST of Lsi02G006940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PBP1_ARATH2.2e-2055.32Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1[more]
KIC_ARATH1.4e-1948.42Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2[more]
CETN1_HUMAN6.5e-0937.36Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1[more]
CATR_SPESI1.5e-0835.16Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1[more]
CETN2_BOVIN1.9e-0837.36Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
BLAST of Lsi02G006940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV00_CUCSA3.6e-4681.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071800 PE=4 SV=1[more]
A0A067GJU9_CITSI3.3e-2863.21Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033591mg PE=4 SV=1[more]
V4TPH6_9ROSI9.7e-2863.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017223mg PE=4 SV=1[more]
B9SFE8_RICCO4.8e-2765.00Ccd1, putative OS=Ricinus communis GN=RCOM_1096900 PE=4 SV=1[more]
I1M2E4_SOYBN5.3e-2658.72Uncharacterized protein OS=Glycine max GN=GLYMA_13G248200 PE=4 SV=1[more]
BLAST of Lsi02G006940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54490.11.2e-2155.32 pinoid-binding protein 1[more]
AT2G46600.17.9e-2148.42 Calcium-binding EF-hand family protein[more]
AT4G27280.11.1e-1952.58 Calcium-binding EF-hand family protein[more]
AT5G37780.32.6e-0834.09 calmodulin 1[more]
AT1G66410.22.6e-0834.09 calmodulin 4[more]
BLAST of Lsi02G006940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664928|ref|XP_011648443.1|5.1e-4681.58PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus][more]
gi|568827153|ref|XP_006467931.1|4.8e-2863.21PREDICTED: calcium-binding protein PBP1 [Citrus sinensis][more]
gi|567913729|ref|XP_006449178.1|1.4e-2763.21hypothetical protein CICLE_v10017223mg [Citrus clementina][more]
gi|255567475|ref|XP_002524717.1|6.9e-2765.00PREDICTED: calcium-binding protein PBP1 [Ricinus communis][more]
gi|1012249710|ref|XP_015943255.1|6.9e-2759.63PREDICTED: calcium-binding protein PBP1-like [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G006940.1Lsi02G006940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 41..90
score: 3.6
IPR002048EF-hand domainSMARTSM00054efh_1coord: 65..93
score: 0.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 61..96
score: 10
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 10..92
score: 2.2
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 4..90
score: 2.79
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 74..86
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 10..98
score: 8.3
NoneNo IPR availablePANTHERPTHR10891:SF626SUBFAMILY NOT NAMEDcoord: 10..98
score: 8.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G006940Csa1G071800Cucumber (Chinese Long) v2culsiB022
Lsi02G006940CSPI01G11540Wild cucumber (PI 183967)cpilsiB021
Lsi02G006940Cucsa.126180Cucumber (Gy14) v1cgylsiB194
Lsi02G006940CmaCh18G003360Cucurbita maxima (Rimu)cmalsiB369
Lsi02G006940Cla019448Watermelon (97103) v1lsiwmB184
Lsi02G006940ClCG03G005410Watermelon (Charleston Gray)lsiwcgB184
Lsi02G006940MELO3C016569.2Melon (DHL92) v3.6.1lsimedB233
Lsi02G006940Cla97C10G190340Watermelon (97103) v2lsiwmbB163
Lsi02G006940Cla97C03G056710Watermelon (97103) v2lsiwmbB176
Lsi02G006940Bhi08G001542Wax gourdlsiwgoB244
Lsi02G006940Cp4.1LG14g00130Cucurbita pepo (Zucchini)cpelsiB167
Lsi02G006940Cp4.1LG09g08730Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G006940CsGy3G005880Cucumber (Gy14) v2cgyblsiB163
Lsi02G006940CsGy1G011540Cucumber (Gy14) v2cgyblsiB018
Lsi02G006940Carg14661Silver-seed gourdcarlsiB135
Lsi02G006940CsaV3_3G005850Cucumber (Chinese Long) v3cuclsiB194
Lsi02G006940CsaV3_1G011690Cucumber (Chinese Long) v3cuclsiB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G006940Bottle gourd (USVL1VR-Ls)lsilsiB049
Lsi02G006940Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi02G006940Bottle gourd (USVL1VR-Ls)lsilsiB098
Lsi02G006940Bottle gourd (USVL1VR-Ls)lsilsiB107
Lsi02G006940Cucumber (Gy14) v1cgylsiB023
Lsi02G006940Cucurbita maxima (Rimu)cmalsiB207
Lsi02G006940Cucurbita maxima (Rimu)cmalsiB414
Lsi02G006940Cucurbita maxima (Rimu)cmalsiB479
Lsi02G006940Cucurbita maxima (Rimu)cmalsiB608
Lsi02G006940Cucurbita maxima (Rimu)cmalsiB796
Lsi02G006940Cucurbita moschata (Rifu)cmolsiB197
Lsi02G006940Cucurbita moschata (Rifu)cmolsiB356
Lsi02G006940Cucurbita moschata (Rifu)cmolsiB399
Lsi02G006940Cucurbita moschata (Rifu)cmolsiB596
Lsi02G006940Cucurbita moschata (Rifu)cmolsiB786
Lsi02G006940Cucurbita pepo (Zucchini)cpelsiB204
Lsi02G006940Cucurbita pepo (Zucchini)cpelsiB402
Lsi02G006940Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G006940Cucurbita pepo (Zucchini)cpelsiB635
Lsi02G006940Wild cucumber (PI 183967)cpilsiB444
Lsi02G006940Wild cucumber (PI 183967)cpilsiB522
Lsi02G006940Cucumber (Chinese Long) v2culsiB438
Lsi02G006940Cucumber (Chinese Long) v2culsiB507
Lsi02G006940Melon (DHL92) v3.5.1lsimeB179
Lsi02G006940Melon (DHL92) v3.5.1lsimeB204
Lsi02G006940Melon (DHL92) v3.5.1lsimeB228
Lsi02G006940Watermelon (Charleston Gray)lsiwcgB170
Lsi02G006940Watermelon (97103) v1lsiwmB200
Lsi02G006940Watermelon (97103) v1lsiwmB215
Lsi02G006940Melon (DHL92) v3.6.1lsimedB189
Lsi02G006940Melon (DHL92) v3.6.1lsimedB239
Lsi02G006940Silver-seed gourdcarlsiB798
Lsi02G006940Silver-seed gourdcarlsiB824
Lsi02G006940Silver-seed gourdcarlsiB848
Lsi02G006940Silver-seed gourdcarlsiB866
Lsi02G006940Cucumber (Chinese Long) v3cuclsiB465
Lsi02G006940Watermelon (97103) v2lsiwmbB154
Lsi02G006940Wax gourdlsiwgoB234