Lsi02G006220 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G006220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 5514687 .. 5515092 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGCAATTTGGTGAAAAATGTTGGAATCACCATGCAATTAGTTGCAACCACAGCCATAGCGAGACCACATGATGTAAAGCATGGGAAAGGAATTGGATCATCAGCCAGTTTTTGGAGAACAAAGAAGAAAATGGGAGCAATAAAGATGCAGCTTCATAATAATGAGAAACCAAATGGCGAATTTGATACCAACTCTCTATTCCCCGTTCGAACTCCCGACTTGGAATTCGTTTTAAACGATCCCAAATTCCAGGTCCCAAAATTACAATTAAAACAATTTTTTTTTTAAATTTTGGGATGTGGCGATGAATTTTTCGCATGGTTGTGTGTGTGTGTAGGAGGAGCTGCATGTGGCGATGAGGGAGTTTTCGCTGTATTACGTGGAGAAGCTGACAAAGTAA

mRNA sequence

ATGGCATGCAATTTGGTGAAAAATGTTGGAATCACCATGCAATTAGTTGCAACCACAGCCATAGCGAGACCACATGATGTAAAGCATGGGAAAGGAATTGGATCATCAGCCAGTTTTTGGAGAACAAAGAAGAAAATGGGAGCAATAAAGATGCAGCTTCATAATAATGAGAAACCAAATGGCGAATTTGATACCAACTCTCTATTCCCCGTTCGAACTCCCGACTTGGAATTCGTTTTAAACGATCCCAAATTCCAGGAGGAGCTGCATGTGGCGATGAGGGAGTTTTCGCTGTATTACGTGGAGAAGCTGACAAAGTAA

Coding sequence (CDS)

ATGGCATGCAATTTGGTGAAAAATGTTGGAATCACCATGCAATTAGTTGCAACCACAGCCATAGCGAGACCACATGATGTAAAGCATGGGAAAGGAATTGGATCATCAGCCAGTTTTTGGAGAACAAAGAAGAAAATGGGAGCAATAAAGATGCAGCTTCATAATAATGAGAAACCAAATGGCGAATTTGATACCAACTCTCTATTCCCCGTTCGAACTCCCGACTTGGAATTCGTTTTAAACGATCCCAAATTCCAGGAGGAGCTGCATGTGGCGATGAGGGAGTTTTCGCTGTATTACGTGGAGAAGCTGACAAAGTAA

Protein sequence

MACNLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQLHNNEKPNGEFDTNSLFPVRTPDLEFVLNDPKFQEELHVAMREFSLYYVEKLTK
BLAST of Lsi02G006220 vs. TrEMBL
Match: A0A0A0LUA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064170 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-06
Identity = 51/131 (38.93%), Postives = 60/131 (45.80%), Query Frame = 1

Query: 1   MACNLVKNVGITMQLVATTAIARPHDVKHGK-GIGSSASFWRTKKKMGAIKMQLHNNE-- 60
           MACNLV N  IT QLVA +       V  GK G G +      K  M  IKMQL  ++  
Sbjct: 1   MACNLVNNAAITNQLVAKS------HVNVGKLGTGPNILATANKNYMRTIKMQLVIDDPK 60

Query: 61  --------------KPNGEFDTNSLFPVR---TPDLEFVLNDPKFQEELHVAMREF---- 107
                         K  G+F   SL         +   VLND KFQEEL VA+R+F    
Sbjct: 61  KSQNLGFGELGKFGKFGGKFVPESLITCLGKLEAEFNLVLNDSKFQEELEVALRDFVGRE 120

BLAST of Lsi02G006220 vs. NCBI nr
Match: gi|659067803|ref|XP_008441364.1| (PREDICTED: tryptophan synthase beta chain 1-like [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 55/132 (41.67%), Postives = 66/132 (50.00%), Query Frame = 1

Query: 1   MACNLVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKK--MGAIKMQLHNNE- 60
           MACN+VKN  IT QLVA     +PH V  GK +G  A+   T K+  MG IKMQL  +  
Sbjct: 1   MACNMVKNSAITNQLVA-----KPH-VNFGK-LGHGANTLATTKRNYMGTIKMQLVTDNP 60

Query: 61  ---------------KPNGEFDTNSLFPVR---TPDLEFVLNDPKFQEELHVAMREF--- 107
                          K  G+F   SL         +   VLND KFQEEL VA+R+F   
Sbjct: 61  KKSQNLGIGELGKFGKFGGKFVPESLITCLGKLEAEFNLVLNDSKFQEELEVALRDFVGR 120

BLAST of Lsi02G006220 vs. NCBI nr
Match: gi|659067800|ref|XP_008441348.1| (PREDICTED: tryptophan synthase beta chain 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = 1

Query: 1   MACN---LVKNVGITMQLVATTAIARPHDVKHGKGIGSSASFWRTKKKMGAIKMQ-LHNN 60
           MAC    +V N  +T  +VA T I R + V+ GKGIG   +FWRTK+ M  IKMQ L N+
Sbjct: 1   MACINVVMVNNAAVTNHVVAATGIWRSNHVELGKGIGLD-TFWRTKRNMRTIKMQVLGNS 60

Query: 61  EKPNGEFDTNS-----LFPVRTPDLEFVLNDPKFQEELHVAM-----REFSLYYVEKLT 106
              +G+   +S     L  V   + +F+  D KFQEE+   M     RE  + Y E+LT
Sbjct: 61  GNSDGKLRQDSEILHTLAKVEDDEFDFLYTD-KFQEEVVEEMRVFAGREMEVCYAERLT 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUA1_CUCSA9.5e-0638.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064170 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659067803|ref|XP_008441364.1|1.1e-0741.67PREDICTED: tryptophan synthase beta chain 1-like [Cucumis melo][more]
gi|659067800|ref|XP_008441348.1|2.1e-0639.50PREDICTED: tryptophan synthase beta chain 1, chloroplastic-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G006220.1Lsi02G006220.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G006220Cla97C03G056080Watermelon (97103) v2lsiwmbB176
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G006220Watermelon (97103) v2lsiwmbB156
Lsi02G006220Wax gourdlsiwgoB235
Lsi02G006220Wax gourdlsiwgoB243
Lsi02G006220Wax gourdlsiwgoB258
Lsi02G006220Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi02G006220Cucumber (Gy14) v1cgylsiB023
Lsi02G006220Cucumber (Gy14) v1cgylsiB094
Lsi02G006220Cucurbita maxima (Rimu)cmalsiB207
Lsi02G006220Cucurbita maxima (Rimu)cmalsiB373
Lsi02G006220Cucurbita maxima (Rimu)cmalsiB608
Lsi02G006220Cucurbita maxima (Rimu)cmalsiB796
Lsi02G006220Cucurbita moschata (Rifu)cmolsiB197
Lsi02G006220Cucurbita moschata (Rifu)cmolsiB200
Lsi02G006220Cucurbita moschata (Rifu)cmolsiB356
Lsi02G006220Cucurbita moschata (Rifu)cmolsiB596
Lsi02G006220Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G006220Cucurbita pepo (Zucchini)cpelsiB057
Lsi02G006220Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G006220Wild cucumber (PI 183967)cpilsiB021
Lsi02G006220Wild cucumber (PI 183967)cpilsiB444
Lsi02G006220Cucumber (Chinese Long) v2culsiB022
Lsi02G006220Cucumber (Chinese Long) v2culsiB438
Lsi02G006220Melon (DHL92) v3.5.1lsimeB179
Lsi02G006220Melon (DHL92) v3.5.1lsimeB228
Lsi02G006220Watermelon (Charleston Gray)lsiwcgB172
Lsi02G006220Watermelon (Charleston Gray)lsiwcgB184
Lsi02G006220Watermelon (97103) v1lsiwmB184
Lsi02G006220Cucumber (Gy14) v2cgyblsiB018
Lsi02G006220Cucumber (Gy14) v2cgyblsiB402
Lsi02G006220Melon (DHL92) v3.6.1lsimedB189
Lsi02G006220Melon (DHL92) v3.6.1lsimedB240
Lsi02G006220Silver-seed gourdcarlsiB587
Lsi02G006220Silver-seed gourdcarlsiB733
Lsi02G006220Silver-seed gourdcarlsiB847
Lsi02G006220Silver-seed gourdcarlsiB920
Lsi02G006220Cucumber (Chinese Long) v3cuclsiB022
Lsi02G006220Cucumber (Chinese Long) v3cuclsiB466