Lsi02G004530 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G004530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPectinesterase
Locationchr02 : 3784230 .. 3785274 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTGGTACTTCAAATTCTTGTACTTCAAATTCTTTACTTTGATGATATATGTGTTTTTACACAAAATAAATAAATATACTACAAAAATGAGGAGAGAAAGATAATTGGGCTCTGAAGGTTGGGTAAGACAGAGTATTGATTTAATTTTGGAAAATTTAGCTTTTTAATTTGGCTTTTTGCTTTTGCTTACCATGCTAATTAATTGTTTTCATTTGATGGAACTGTTAGCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGGTTCCAAGACATTTGTATTCTCAAAGATAATACCAACTTTTAAATGAGTGTGACATCTAAGAAAGTGTTGACTTCATTTTTTTTTTTTTTTTTTAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAGTCAATCAAGGCAATGCTAGGATCTTTCTAGGTCTGTCATGAAGACAATACTCAATTATTGTGTTCTCGAAGTCATTTTTTGGATGACATGGTGACACTGGAGGAATGTCAAAGTGGGAAGGGATATTGGTAATTCTTTTATTTTATGCAGAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGTTAGCTGCAAAAATTGACATCCTCTTTAGATATGAACTCTAATTATATTGAGTGAAATGGTTTCATTTCATTCATTATATAATTAGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA

mRNA sequence

ATGGTCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA

Coding sequence (CDS)

ATGGTCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA

Protein sequence

MVGKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLSELVMFQDCNIYARIINNSVTVTTQLKDELGVQKHLLFSKPYYHDFAGDNKFNDQELAGASVSNRVNWPGFHVIDKRLAFSYIVNNFIDESGLRSRGYASFGQVLGSQVDLSMKLFIV
BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A0A0L1M3_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_4G260430 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 38/107 (35.51%), Postives = 50/107 (46.73%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFL-------------------- 62
           G NFM Q LT +N+     GQ +A+ D A +T+YYKC FL                    
Sbjct: 107 GSNFMAQFLTFQNTAGPNEGQAIALLDQATHTAYYKCVFLGYQDTLYAGALPQFFKECDI 166

Query: 63  ---------SELVMFQDCNIYARIINNSVTVTTQLKDELGVQKHLLF 81
                    + LV+FQDCNIYAR+ +  +TVT Q K  L      +F
Sbjct: 167 YGSVDFIFGNGLVVFQDCNIYARLFDVQITVTAQSKPSLNSLSGFIF 213

BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A078G8D1_BRANA (Pectinesterase OS=Brassica napus GN=BnaC03g29660D PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 45/158 (28.48%), Postives = 73/158 (46.20%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLSELVMFQDCNIYARIIN--- 62
           G +F+ + LT+ N+     GQ +A+    D + +Y C   + +V+ Q CN+YAR  +   
Sbjct: 131 GSHFICKHLTIRNTAGPTKGQALALMCSGDLSVFYNCS--NAVVVLQKCNLYARRPSKGN 190

Query: 63  -NSVTV--TTQLKDELGVQKHLLFSKPYYHDFAGDN-----------KFNDQEL------ 122
            N +T    T  KD+ G+       KP  HD A  N           K + + L      
Sbjct: 191 GNEITAQGRTNPKDQSGIVIQGCAIKP-THDLARSNYTVKTYLAGWDKSSGEALKTLYFA 250

Query: 123 ------AGASVSNRVNWPGFHVIDKRLAFSYIVNNFID 132
                  G++ +NRV WP +H+I   +A ++ V+ FID
Sbjct: 251 EYNNSGTGSNTTNRVTWPSYHIISATIASNFTVSRFID 285

BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A0A0LR14_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLSELVMFQD 51
           G NFM +SLT ENS   QN Q VA+FD A++T+YYKCRFLS    FQD
Sbjct: 112 GDNFMAESLTFENSAGPQNNQAVAVFDKANHTAYYKCRFLS----FQD 155

BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659131264|ref|XP_008465596.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS------------------- 62
           G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                    
Sbjct: 51  GNNFMAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNI 110

Query: 63  ----------ELVMFQDCNIYARIINNSVTVTTQLKDEL 73
                       VMFQDCNIYAR+ +NS+TVT Q KD L
Sbjct: 111 YGSVDFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFL 149

BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659131231|ref|XP_008465578.1| (PREDICTED: pectinesterase 2-like, partial [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLS------------------- 62
           G NFM +SLT ENS   QNGQ VA+FD AD+T+YYKCRFL                    
Sbjct: 3   GDNFMAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNI 62

Query: 63  ----------ELVMFQDCNIYARIINNSVTVTTQLKDEL 73
                       VMFQDCNIYAR+ +NS+TVT Q KD L
Sbjct: 63  YGSVDFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFL 101

BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|778708428|ref|XP_011656190.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 44/99 (44.44%), Postives = 52/99 (52.53%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFL-------------------- 62
           G NF+ QSLT +NS   QNGQ VA+ D A +T+YYKCRFL                    
Sbjct: 85  GNNFLAQSLTFKNSAGPQNGQAVAVLDEAHFTTYYKCRFLGFQDTLYVRGKPQFFKECDI 144

Query: 63  ---------SELVMFQDCNIYARIINNSVTVTTQLKDEL 73
                      LVMFQDCNIYAR  N S+T+T Q K +L
Sbjct: 145 YGSVDFIFGDGLVMFQDCNIYAREPNRSITITAQSKKQL 183

BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659068777|ref|XP_008446175.1| (PREDICTED: pectinesterase 2-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFL-------------------- 62
           G NF+ +SLT ENS   QNGQ VA+ D A +T+Y+KC+FL                    
Sbjct: 75  GNNFLAKSLTFENSAGPQNGQAVAVLDQAHFTAYHKCKFLGFQDTLYVKGTQFFKECEIY 134

Query: 63  --------SELVMFQDCNIYARIINNSVTVTTQLKDE 72
                   + LVMFQDCNIYAR  N  +TVT Q K++
Sbjct: 135 GSVDFIFGNGLVMFQDCNIYAREPNRPITVTAQSKEQ 171

BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659068775|ref|XP_008446163.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 42/99 (42.42%), Postives = 52/99 (52.53%), Query Frame = 1

Query: 3   GKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFL-------------------- 62
           G NF+ +SLT ENS   QNGQ VA+ D A +T+Y+KCRFL                    
Sbjct: 85  GDNFIAKSLTFENSAGPQNGQAVAVLDQARFTAYHKCRFLGFQDTLYVGGKSHFFKECDV 144

Query: 63  ---------SELVMFQDCNIYARIINNSVTVTTQLKDEL 73
                    + L MFQDCNIYAR  N  +TVT Q K++L
Sbjct: 145 YGTVDFIFGNGLTMFQDCNIYAREPNRPITVTAQSKEQL 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1M3_CUCSA3.1e-0835.51Pectinesterase OS=Cucumis sativus GN=Csa_4G260430 PE=4 SV=1[more]
A0A078G8D1_BRANA2.6e-0728.48Pectinesterase OS=Brassica napus GN=BnaC03g29660D PE=4 SV=1[more]
A0A0A0LR14_CUCSA1.7e-0662.50Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659131264|ref|XP_008465596.1|1.2e-1348.48PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis... [more]
gi|659131231|ref|XP_008465578.1|1.6e-1348.48PREDICTED: pectinesterase 2-like, partial [Cucumis melo][more]
gi|778708428|ref|XP_011656190.1|1.1e-1144.44PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus][more]
gi|659068777|ref|XP_008446175.1|1.6e-1042.27PREDICTED: pectinesterase 2-like [Cucumis melo][more]
gi|659068775|ref|XP_008446163.1|2.1e-1042.42PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G004530.1Lsi02G004530.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..137
score: 1.8
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 3..51
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None