Lsi02G004530 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTTGGTACTTCAAATTCTTGTACTTCAAATTCTTTACTTTGATGATATATGTGTTTTTACACAAAATAAATAAATATACTACAAAAATGAGGAGAGAAAGATAATTGGGCTCTGAAGGTTGGGTAAGACAGAGTATTGATTTAATTTTGGAAAATTTAGCTTTTTAATTTGGCTTTTTGCTTTTGCTTACCATGCTAATTAATTGTTTTCATTTGATGGAACTGTTAGCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGGTTCCAAGACATTTGTATTCTCAAAGATAATACCAACTTTTAAATGAGTGTGACATCTAAGAAAGTGTTGACTTCATTTTTTTTTTTTTTTTTTAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAGTCAATCAAGGCAATGCTAGGATCTTTCTAGGTCTGTCATGAAGACAATACTCAATTATTGTGTTCTCGAAGTCATTTTTTGGATGACATGGTGACACTGGAGGAATGTCAAAGTGGGAAGGGATATTGGTAATTCTTTTATTTTATGCAGAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGTTAGCTGCAAAAATTGACATCCTCTTTAGATATGAACTCTAATTATATTGAGTGAAATGGTTTCATTTCATTCATTATATAATTAGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA ATGGTCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA ATGGTCGGCAAAAATTTCATGACACAATCATTGACTCTTGAAAACTCAACCAGATCCCAAAATGGTCAAGTAGTGGCGATCTTTGACTATGCCGACTATACTTCATACTACAAGTGCAGATTTTTAAGTGAACTTGTTATGTTCCAAGACTGCAATATATACGCTAGGATAATCAATAATTCTGTCACTGTTACGACACAGTTAAAAGACGAACTAGGTGTCCAAAAGCATCTTCTCTTTTCAAAACCGTACTATCACGATTTTGCAGGAGATAACAAGTTTAACGATCAAGAGTTGGCCGGTGCTAGTGTCTCGAACAGAGTTAATTGGCCAGGTTTTCATGTAATTGATAAACGATTAGCCTTTAGTTATATTGTAAACAACTTTATTGACGAATCTGGGTTGAGATCTAGAGGGTATGCCAGTTTTGGGCAAGTTTTGGGCAGCCAAGTAGATCTGTCAATGAAGTTATTTATAGTATAA MVGKNFMTQSLTLENSTRSQNGQVVAIFDYADYTSYYKCRFLSELVMFQDCNIYARIINNSVTVTTQLKDELGVQKHLLFSKPYYHDFAGDNKFNDQELAGASVSNRVNWPGFHVIDKRLAFSYIVNNFIDESGLRSRGYASFGQVLGSQVDLSMKLFIV
BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A0A0L1M3_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_4G260430 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08 Identity = 38/107 (35.51%), Postives = 50/107 (46.73%), Query Frame = 1
BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A078G8D1_BRANA (Pectinesterase OS=Brassica napus GN=BnaC03g29660D PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07 Identity = 45/158 (28.48%), Postives = 73/158 (46.20%), Query Frame = 1
BLAST of Lsi02G004530 vs. TrEMBL
Match: A0A0A0LR14_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06 Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659131264|ref|XP_008465596.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis melo]) HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13 Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1
BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659131231|ref|XP_008465578.1| (PREDICTED: pectinesterase 2-like, partial [Cucumis melo]) HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13 Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1
BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|778708428|ref|XP_011656190.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus]) HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11 Identity = 44/99 (44.44%), Postives = 52/99 (52.53%), Query Frame = 1
BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659068777|ref|XP_008446175.1| (PREDICTED: pectinesterase 2-like [Cucumis melo]) HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10 Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 1
BLAST of Lsi02G004530 vs. NCBI nr
Match: gi|659068775|ref|XP_008446163.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo]) HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10 Identity = 42/99 (42.42%), Postives = 52/99 (52.53%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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