Lsi02G004440 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G004440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPectinesterase inhibitor
Locationchr02 : 3714024 .. 3714596 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCCAACCACCATTGCTCGTCTTGTTTTGTACTTTGAGTGTGTGTCTGTTAGTGAAAGCAGATCAAAATATAAGCACCAACAACTTTGTTCAAAATACTTGCGACCGAACTCATGAACTCAAAAACTTGTGTCTTTCCCACATAAATTCAGACCCTCACGATGATTTGAAGAAAAGTTTGACGGGTTTTCTAACGATATTTGTGAATCATAGCATCACTGATATCAACAACGACATTTTGTTCCTTAAAAAAGAGCTCGATTCAAACAAGATCAGTCCCGACACAAAAGATATGTATGTGGTTTGTTCGGATAACTATGTAATGGGATTGGGTGATCTCCAAGAAACTTTGCAGAAACTACAGAAAAAAGGGAGTATAAATGTATATTACTCGCTAGTCACTCACACTTATGATCTTTTAACTGGGTGTATGGAAGATTTTGAAGGGATTTCTACTATCCCTCCTGAGTGGCAATCTCGTTACAAAGCCTCTTATGCATTATTGGATCTATCATTGGCAATGATAAATCTCATTAAATGTAATATTCCTGAAGCATGTTCCAAATAA

mRNA sequence

ATGGCCTCCCAACCACCATTGCTCGTCTTGTTTTGTACTTTGAGTGTGTGTCTGTTAGTGAAAGCAGATCAAAATATAAGCACCAACAACTTTGTTCAAAATACTTGCGACCGAACTCATGAACTCAAAAACTTGTGTCTTTCCCACATAAATTCAGACCCTCACGATGATTTGAAGAAAAGTTTGACGGGTTTTCTAACGATATTTGTGAATCATAGCATCACTGATATCAACAACGACATTTTGTTCCTTAAAAAAGAGCTCGATTCAAACAAGATCAGTCCCGACACAAAAGATATGTATGTGGTTTGTTCGGATAACTATGTAATGGGATTGGGTGATCTCCAAGAAACTTTGCAGAAACTACAGAAAAAAGGGAGTATAAATGTATATTACTCGCTAGTCACTCACACTTATGATCTTTTAACTGGGTGTATGGAAGATTTTGAAGGGATTTCTACTATCCCTCCTGAGTGGCAATCTCGTTACAAAGCCTCTTATGCATTATTGGATCTATCATTGGCAATGATAAATCTCATTAAATGTAATATTCCTGAAGCATGTTCCAAATAA

Coding sequence (CDS)

ATGGCCTCCCAACCACCATTGCTCGTCTTGTTTTGTACTTTGAGTGTGTGTCTGTTAGTGAAAGCAGATCAAAATATAAGCACCAACAACTTTGTTCAAAATACTTGCGACCGAACTCATGAACTCAAAAACTTGTGTCTTTCCCACATAAATTCAGACCCTCACGATGATTTGAAGAAAAGTTTGACGGGTTTTCTAACGATATTTGTGAATCATAGCATCACTGATATCAACAACGACATTTTGTTCCTTAAAAAAGAGCTCGATTCAAACAAGATCAGTCCCGACACAAAAGATATGTATGTGGTTTGTTCGGATAACTATGTAATGGGATTGGGTGATCTCCAAGAAACTTTGCAGAAACTACAGAAAAAAGGGAGTATAAATGTATATTACTCGCTAGTCACTCACACTTATGATCTTTTAACTGGGTGTATGGAAGATTTTGAAGGGATTTCTACTATCCCTCCTGAGTGGCAATCTCGTTACAAAGCCTCTTATGCATTATTGGATCTATCATTGGCAATGATAAATCTCATTAAATGTAATATTCCTGAAGCATGTTCCAAATAA

Protein sequence

MASQPPLLVLFCTLSVCLLVKADQNISTNNFVQNTCDRTHELKNLCLSHINSDPHDDLKKSLTGFLTIFVNHSITDINNDILFLKKELDSNKISPDTKDMYVVCSDNYVMGLGDLQETLQKLQKKGSINVYYSLVTHTYDLLTGCMEDFEGISTIPPEWQSRYKASYALLDLSLAMINLIKCNIPEACSK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity
Vocabulary: INTERPRO
TermDefinition
IPR006501Pectinesterase_inhib_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0030599 pectinesterase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G004440.1Lsi02G004440.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006501Pectinesterase inhibitor domainGENE3DG3DSA:1.20.140.40coord: 28..180
score: 3.0
IPR006501Pectinesterase inhibitor domainSMARTSM00856PMEI_2coord: 27..176
score: 6.
IPR006501Pectinesterase inhibitor domainTIGRFAMsTIGR01614TIGR01614coord: 7..179
score: 1.0
IPR006501Pectinesterase inhibitor domainunknownSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 29..180
score: 3.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G004440ClCG03G003200Watermelon (Charleston Gray)lsiwcgB184
Lsi02G004440MELO3C035537.2Melon (DHL92) v3.6.1lsimedB189
The following gene(s) are paralogous to this gene:

None