Lsi02G003960 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAACAACAAAATTAAACCAGGAAAATTTATATGTTTTTTTTTTTGGGTGCAAAAAGGGGCAACATCAGGAATTGGAGAAGAAACAGCAAGAGTTTTGGCAAAAAGAGGAGTAAGAATAGTAATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATGTGAGTTTGTCTTTACTTTTCCTAACCAAAATCCCATTTTCCCCTCTCTAACTTCATCCCCTTTTTGGACACATATTTCCCTTTTGCAGAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGGTAATTATTTTTCTTCTCATTCCTAAACTCAAACAGAGAAGAATGTTTGATTGTAATCTGTGAACAAATTGAAAAGATTACAATAGATAACTGAATGATGAAAGGGAAAATACCTGTTTGTAGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAGTTAGAGAAACTTGAATTTACTCAATAATGGCTAAAGAAAGCTGAAGTTATGTCAAATTTAACATCAAAAGGATACAAAATAATGCATTTCAAAACGTTGTTTTCTCTGTAGAATTTATTCGAACAAGATAATTGCAATGTTTCAATCTGTGTGTCTCTTTTTCCCTGCTGCAGGACATTACCTTCTGACAGAATTGCTTTTAGACAAATTGATAGAAACATCAAAGAGAACAGGCATCCAAGGAAGAATTATAAACGTCTCTTCTGTTGTCCACTACTGGGTGAAGAAGGACGATCTCTGCTTCATTCATCTGCTCAACCCAAACAAGCTAGAAAAACTTGCAGCCCCTCCTAGATTATTTTCTTTCAGTCAAATTACAAGTTTTGTCCTTGAATTTTCAAAAGTGTCTAATGGGTCTCTACATCTTCAATTTTGTGTCTAAACTTTAGCAAGTGTCTAATAGGTCATTGAAACTTAAAAAGTGTCTAATAGATTCTTAAACTTTCAATTTCATGTCCAATACATCCTTGAAATAGATCAATGACCTATTCCTTATTTTTTAAACTTCATTGGTCTTCTTGACAAAAAACAGAAAGTTTAGAGCTCTATCAAACATAAAATTAAAATTTATAATTACTAGATCGGATAATTTTAAATTTTCAAACAAGTCATAGACATGTTAGACACAAAATTCTAAGTTCAAGAACTTATTAGTCATTTCTAAAGTTCAAGGACCTATTAAACATAAAATTGAAAGTTTATGGATCAAATAGACACGAAAAGTTATGTGACTAAACTTGTAATTTAACTTTTTCGTTTGAGGTCTTTCTCTTTCCTCAAAACACAGAAAGCTCACTAGCTGGTTTCTGGTCAACAATCAGGCATGGTTAGAGAATCAAACTAATACCTGTTTGGGATTTCTGCAGATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA AAAAAAACAACAAAATTAAACCAGGAAAATTTATATGTTTTTTTTTTTGGGTGCAAAAAGGGGCAACATCAGGAATTGGAGAAGAAACAGCAAGAGTTTTGGCAAAAAGAGGAGTAAGAATAGTAATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA ATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFITGRNC
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13 Identity = 60/189 (31.75%), Postives = 90/189 (47.62%), Query Frame = 1
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12 Identity = 59/204 (28.92%), Postives = 91/204 (44.61%), Query Frame = 1
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11 Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 1
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10 Identity = 59/213 (27.70%), Postives = 94/213 (44.13%), Query Frame = 1
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10 Identity = 57/207 (27.54%), Postives = 87/207 (42.03%), Query Frame = 1
BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0B0MSH5_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic OS=Gossypium arboreum GN=F383_25787 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47 Identity = 107/182 (58.79%), Postives = 129/182 (70.88%), Query Frame = 1
BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0A0LNV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004220 PE=3 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 6.4e-42 Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1
BLAST of Lsi02G003960 vs. TrEMBL
Match: I1JXA2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=2) HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39 Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1
BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0R0KER4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39 Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1
BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A088AWS0_SOYBN (Ribitol dehydrogenase-like protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39 Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1
BLAST of Lsi02G003960 vs. TAIR10
Match: AT5G50130.1 (AT5G50130.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35 Identity = 92/192 (47.92%), Postives = 119/192 (61.98%), Query Frame = 1
BLAST of Lsi02G003960 vs. TAIR10
Match: AT4G24050.1 (AT4G24050.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 102.1 bits (253), Expect = 3.9e-22 Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 1
BLAST of Lsi02G003960 vs. TAIR10
Match: AT1G64590.1 (AT1G64590.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 101.3 bits (251), Expect = 6.6e-22 Identity = 76/197 (38.58%), Postives = 100/197 (50.76%), Query Frame = 1
BLAST of Lsi02G003960 vs. TAIR10
Match: AT4G11410.1 (AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15 Identity = 60/186 (32.26%), Postives = 96/186 (51.61%), Query Frame = 1
BLAST of Lsi02G003960 vs. TAIR10
Match: AT2G37540.1 (AT2G37540.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 79.3 bits (194), Expect = 2.7e-15 Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 1
BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|728817419|gb|KHG02454.1| (Short-chain dehydrogenase TIC 32, chloroplastic [Gossypium arboreum]) HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47 Identity = 107/182 (58.79%), Postives = 129/182 (70.88%), Query Frame = 1
BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|778655531|ref|XP_004138098.2| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 9.2e-42 Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1
BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|700208459|gb|KGN63555.1| (hypothetical protein Csa_1G004220 [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 9.2e-42 Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1
BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|955316949|ref|XP_006578649.2| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Glycine max]) HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39 Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1
BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|947115291|gb|KRH63593.1| (hypothetical protein GLYMA_04G186300 [Glycine max]) HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39 Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |