Lsi02G003960 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G003960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNAD(P)-binding Rossmann-fold superfamily protein
Locationchr02 : 3360875 .. 3362696 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAACAACAAAATTAAACCAGGAAAATTTATATGTTTTTTTTTTTGGGTGCAAAAAGGGGCAACATCAGGAATTGGAGAAGAAACAGCAAGAGTTTTGGCAAAAAGAGGAGTAAGAATAGTAATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATGTGAGTTTGTCTTTACTTTTCCTAACCAAAATCCCATTTTCCCCTCTCTAACTTCATCCCCTTTTTGGACACATATTTCCCTTTTGCAGAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGGTAATTATTTTTCTTCTCATTCCTAAACTCAAACAGAGAAGAATGTTTGATTGTAATCTGTGAACAAATTGAAAAGATTACAATAGATAACTGAATGATGAAAGGGAAAATACCTGTTTGTAGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAGTTAGAGAAACTTGAATTTACTCAATAATGGCTAAAGAAAGCTGAAGTTATGTCAAATTTAACATCAAAAGGATACAAAATAATGCATTTCAAAACGTTGTTTTCTCTGTAGAATTTATTCGAACAAGATAATTGCAATGTTTCAATCTGTGTGTCTCTTTTTCCCTGCTGCAGGACATTACCTTCTGACAGAATTGCTTTTAGACAAATTGATAGAAACATCAAAGAGAACAGGCATCCAAGGAAGAATTATAAACGTCTCTTCTGTTGTCCACTACTGGGTGAAGAAGGACGATCTCTGCTTCATTCATCTGCTCAACCCAAACAAGCTAGAAAAACTTGCAGCCCCTCCTAGATTATTTTCTTTCAGTCAAATTACAAGTTTTGTCCTTGAATTTTCAAAAGTGTCTAATGGGTCTCTACATCTTCAATTTTGTGTCTAAACTTTAGCAAGTGTCTAATAGGTCATTGAAACTTAAAAAGTGTCTAATAGATTCTTAAACTTTCAATTTCATGTCCAATACATCCTTGAAATAGATCAATGACCTATTCCTTATTTTTTAAACTTCATTGGTCTTCTTGACAAAAAACAGAAAGTTTAGAGCTCTATCAAACATAAAATTAAAATTTATAATTACTAGATCGGATAATTTTAAATTTTCAAACAAGTCATAGACATGTTAGACACAAAATTCTAAGTTCAAGAACTTATTAGTCATTTCTAAAGTTCAAGGACCTATTAAACATAAAATTGAAAGTTTATGGATCAAATAGACACGAAAAGTTATGTGACTAAACTTGTAATTTAACTTTTTCGTTTGAGGTCTTTCTCTTTCCTCAAAACACAGAAAGCTCACTAGCTGGTTTCTGGTCAACAATCAGGCATGGTTAGAGAATCAAACTAATACCTGTTTGGGATTTCTGCAGATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA

mRNA sequence

AAAAAAACAACAAAATTAAACCAGGAAAATTTATATGTTTTTTTTTTTGGGTGCAAAAAGGGGCAACATCAGGAATTGGAGAAGAAACAGCAAGAGTTTTGGCAAAAAGAGGAGTAAGAATAGTAATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA

Coding sequence (CDS)

ATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA

Protein sequence

MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFITGRNC
BLAST of Lsi02G003960 vs. Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 60/189 (31.75%), Postives = 90/189 (47.62%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           MA R+    AKVKE I ++ P A++ V E+DLSS+ SVR+F  E+ + GLPLN+LINN G
Sbjct: 58  MAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAG 117

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTR---------------AY 120
           + +     S D  EL FATN+L         L+T  +    ++               +Y
Sbjct: 118 IMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSY 177

Query: 121 AQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHP 175
            +      ++ K     ++      L + L     T Q       L+E   N+T N++HP
Sbjct: 178 PEGVRFDKINDKSSYSSMRAYGQSKLCNVLHANELTKQ-------LKEDGVNITANSLHP 237

BLAST of Lsi02G003960 vs. Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 59/204 (28.92%), Postives = 91/204 (44.61%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           M  R+M  A  VK+ I ++ P A++   E+DLSSL SV++F  EF + G PLNILINN G
Sbjct: 59  MGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAG 118

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVA 120
           + +   + S D  EL FATN++                +  T     +       +K+  
Sbjct: 119 IMACPFKLSKDNIELQFATNHIG--------------HFLLTNLLLDTMKKTTRESKKEG 178

Query: 121 RQLKVIFLLHLLHFLQRV-------------------NKTAQIL---KFQPCLQERDANV 180
           R + V    H   + + +                   +K A +L   +    L+E   N+
Sbjct: 179 RIVNVASEAHRFAYPEGIRFDKINDQSSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNI 238

Query: 181 TINAVHPGIIKTAIIRAHRGFITG 183
           T N++HPG I T + R H   + G
Sbjct: 239 TANSLHPGTIVTNLFR-HNSAVNG 247

BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEA-------------EILVSEIDLSSLASVRRFCVEFAA 60
           M  RD  +A +   +++RE  +A             E++V E+DL+SL SVR FC E   
Sbjct: 72  MGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQ 131

Query: 61  LGLPLNILINNGGVFSPNLEYSDDKFELTFATNYL---------------APPCKIISTL 120
               L++LINN G+F      ++D FE+ F  N+L               + P +I+  +
Sbjct: 132 EEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIV-VV 191

Query: 121 ETPLTK--------------YNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRV 175
            + L K              YN +  Y++SKLA IL  +E+AR+L+              
Sbjct: 192 SSKLYKYGDINFDDLNSEQSYNKSFCYSRSKLANILFTRELARRLE-------------- 251

BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 59/213 (27.70%), Postives = 94/213 (44.13%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEA----------EILVSEIDLSSLASVRRFCVEFAALGL 60
           M  RD  +A +   ++++E  +A          +++V E+DL+SL SVR FC E      
Sbjct: 73  MGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEP 132

Query: 61  PLNILINNGGVFSPNLEYSDDKFELTFATNYL---------------APPCKIISTLETP 120
            L++LINN GVF      ++D FE+ F  N+L               + P +I+  + + 
Sbjct: 133 RLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIV-VVSSK 192

Query: 121 LTK--------------YNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKT 175
           L K              YN +  Y++SKLA IL  +E+AR+L+                 
Sbjct: 193 LYKYGEINFEDLNSEQSYNKSFCYSRSKLANILFTRELARRLE----------------- 252

BLAST of Lsi02G003960 vs. Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 57/207 (27.54%), Postives = 87/207 (42.03%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +A RDM+K     + I+ E+    +    +DL+SL S+R F  +       ++ILINN G
Sbjct: 67  LACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAG 126

Query: 61  VFSPNLEYSDDKFELTFATNYL---------------APPCKIIST-------------- 120
           V       ++D FE+ F  N+L               + P +II+               
Sbjct: 127 VMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDD 186

Query: 121 LETPLTKYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCL 179
           L     KYN   AY QSKLA +L  KE++R+L                            
Sbjct: 187 LNWQTRKYNTKAAYCQSKLAIVLFTKELSRRL---------------------------- 242

BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0B0MSH5_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic OS=Gossypium arboreum GN=F383_25787 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 107/182 (58.79%), Postives = 129/182 (70.88%), Query Frame = 1

Query: 3   ARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVF 62
           ARD+KKAA++KERI++++P AE+++ EIDLSSLASV+RFC EF ALGLPLNILINN G+F
Sbjct: 91  ARDIKKAAELKERIRKDNPNAEVILCEIDLSSLASVKRFCNEFLALGLPLNILINNAGIF 150

Query: 63  SPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVARQ 122
           S  LE+S+DKFE+TFATNYL     I     T    YNGTRAYAQSKLA ILHAKE+A+Q
Sbjct: 151 SQKLEFSEDKFEMTFATNYLVLILPIYCWCCT--CSYNGTRAYAQSKLATILHAKEIAKQ 210

Query: 123 LKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFITG 182
           LK                             ++ANVTINAVHPGI+KT I RAH+GFITG
Sbjct: 211 LKA----------------------------KNANVTINAVHPGIVKTGIFRAHKGFITG 242

Query: 183 RN 185
           +N
Sbjct: 271 KN 242

BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0A0LNV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004220 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.4e-42
Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           M ARD+KKAA+VKE I++ESPEAEI+V EIDLSSLASV+ FC +F +LGLPLNILINN G
Sbjct: 78  MTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCNQFLSLGLPLNILINNAG 137

Query: 61  VFSPNLEYSDDKFELTFATNYL-----------------------APPCKIISTLETPLT 120
           VFS NLE+S+DK ELTFATNYL                            + S +   + 
Sbjct: 138 VFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHGWVK 197

Query: 121 K-------------YNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
           K             YNGTRAYAQSKLA ILHAKE++RQ                      
Sbjct: 198 KDGLSFRQMLNPNSYNGTRAYAQSKLANILHAKELSRQ---------------------- 257

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                 LQ R+A VTINAVHPGI+KTAIIRAH+GFIT
Sbjct: 258 ------LQGRNARVTINAVHPGIVKTAIIRAHKGFIT 266

BLAST of Lsi02G003960 vs. TrEMBL
Match: I1JXA2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AARD+KKA +VK+ I++E+P+AE+++ EIDL S  SV+RFC EF AL LPLNILINN G
Sbjct: 92  IAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAG 151

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLT---------------- 120
           +FS NLE+S+DK E+TFATNYL           K+I T E                    
Sbjct: 152 MFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEK 211

Query: 121 -------------KYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
                        KYNGTRAYAQSKLA ILHAKE+A+QLK                    
Sbjct: 212 KDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKA------------------- 271

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                    R+A VTINAVHPGI+KT IIRAH+G IT
Sbjct: 272 ---------RNARVTINAVHPGIVKTGIIRAHKGLIT 280

BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A0R0KER4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AARD+KKA +VK+ I++E+P+AE+++ EIDL S  SV+RFC EF AL LPLNILINN G
Sbjct: 92  IAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAG 151

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLT---------------- 120
           +FS NLE+S+DK E+TFATNYL           K+I T E                    
Sbjct: 152 MFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEK 211

Query: 121 -------------KYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
                        KYNGTRAYAQSKLA ILHAKE+A+QLK                    
Sbjct: 212 KDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKA------------------- 271

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                    R+A VTINAVHPGI+KT IIRAH+G IT
Sbjct: 272 ---------RNARVTINAVHPGIVKTGIIRAHKGLIT 280

BLAST of Lsi02G003960 vs. TrEMBL
Match: A0A088AWS0_SOYBN (Ribitol dehydrogenase-like protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AARD+KKA +VK+ I++E+P+AE+++ EIDL S  SV+RFC EF AL LPLNILINN G
Sbjct: 67  IAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAG 126

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLT---------------- 120
           +FS NLE+S+DK E+TFATNYL           K+I T E                    
Sbjct: 127 MFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEK 186

Query: 121 -------------KYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
                        KYNGTRAYAQSKLA ILHAKE+A+QLK                    
Sbjct: 187 KDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKA------------------- 246

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                    R+A VTINAVHPGI+KT IIRAH+G IT
Sbjct: 247 ---------RNARVTINAVHPGIVKTGIIRAHKGLIT 255

BLAST of Lsi02G003960 vs. TAIR10
Match: AT5G50130.1 (AT5G50130.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 92/192 (47.92%), Postives = 119/192 (61.98%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           MA RDMKKA  VKERI RE+PEA+I++ EIDLSSL+SV RFC +F +  LPLNILINN G
Sbjct: 65  MAVRDMKKAEMVKERIIRENPEADIILFEIDLSSLSSVARFCSQFLSQDLPLNILINNAG 124

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVA 120
           VFSPNLE+S++K ELTFATN+L         +E  +      ++  + ++  +       
Sbjct: 125 VFSPNLEFSEEKIELTFATNFLGHYLLTEMLIEKMID--TAEKSGIEGRIINLSSVIHNW 184

Query: 121 RQLKVIFLLHLLHFLQRVN--------KTAQILKFQPC---LQERDANVTINAVHPGIIK 180
            +        LLH + R N        K A IL  +     L++R+ANVTINAVHPGI+K
Sbjct: 185 VKPDCFSFPKLLHPISRYNGTRAYAQSKLATILHAKALSKQLKDRNANVTINAVHPGIVK 244

Query: 181 TAIIRAHRGFIT 182
           T IIRAH+G  T
Sbjct: 245 TGIIRAHKGLFT 254

BLAST of Lsi02G003960 vs. TAIR10
Match: AT4G24050.1 (AT4G24050.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 3.9e-22
Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 1

Query: 3   ARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVF 62
           AR++K A + KERI  E PE EI+V ++DLSS+ASVR F  +F +L LPLN+LINN G  
Sbjct: 65  ARNVKAAEEAKERIVSEFPETEIVVMKLDLSSIASVRNFVADFESLDLPLNLLINNAGKL 124

Query: 63  SPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLTKYNGTRAYAQSKL----- 122
           +     S+D  E+TFATNYL           K+I T E   T   G      S +     
Sbjct: 125 AHEHAISEDGIEMTFATNYLGHFLLTNLLLNKMIQTAEE--TGVQGRIVNVTSGIHGWFS 184

Query: 123 ACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKT 182
             ++    +  Q K  F     + L ++       +    LQ+  ANVT+N VHPG+++T
Sbjct: 185 GDLIEYLRLISQPKCQFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVRT 244

BLAST of Lsi02G003960 vs. TAIR10
Match: AT1G64590.1 (AT1G64590.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-22
Identity = 76/197 (38.58%), Postives = 100/197 (50.76%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           + AR +K A + K RI  E P+AEI+V  +DLSSL SVRRF  +F +L LPLNILINN G
Sbjct: 63  LPARSVKTAEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESLNLPLNILINNAG 122

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKL-ACILHAKEV 120
            ++     S+D  E+TFATNYL         L T L         AQ+ +   I++   V
Sbjct: 123 KYAHKHALSEDGVEMTFATNYLG------HFLLTKLLLKKMIETAAQTGVQGRIVNVTSV 182

Query: 121 ARQLKVIFLLHLLHFLQRVN------------KTAQIL---KFQPCLQERDANVTINAVH 180
                   +L  L  + R N            K A +L   +    L + DANVT N VH
Sbjct: 183 VHSWFSGDMLQYLADISRNNRNYDATRAYALSKLANVLHTVELSRLLHKMDANVTANCVH 242

Query: 181 PGIIKTAIIRAHRGFIT 182
           PGI+KT + R   G +T
Sbjct: 243 PGIVKTRLTRDREGVVT 253

BLAST of Lsi02G003960 vs. TAIR10
Match: AT4G11410.1 (AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15
Identity = 60/186 (32.26%), Postives = 96/186 (51.61%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           MA R+     +V+++I +E P+A+I V ++DLSS+ASVR F  E+ +L LPLN+LINN G
Sbjct: 58  MAVRNTDSGNQVRDKILKEIPQAKIDVMKLDLSSMASVRSFASEYQSLDLPLNLLINNAG 117

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACI-----LH 120
           + +     S D  EL FATN+L     +++ L     K   + +  + ++  +       
Sbjct: 118 IMACPFLLSSDNIELQFATNHLGH--FLLTNLLLERMKKTASESNREGRIVIVSSEGHRF 177

Query: 121 AKEVARQLKVIFLLHLLHFLQRV--NKTAQIL---KFQPCLQERDANVTINAVHPGIIKT 177
           A     Q   I      + LQ    +K   IL   +     +E+  N+T N++HPG I T
Sbjct: 178 AYREGVQFDKINDEARYNTLQAYGQSKLGNILHATELARLFKEQGVNITANSLHPGSIMT 237

BLAST of Lsi02G003960 vs. TAIR10
Match: AT2G37540.1 (AT2G37540.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-15
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AAR+ K A + KE I + +P A +   +ID+SS+ SVR F  +F AL +PLNILINN G
Sbjct: 62  IAARNPKAANESKEMILQMNPNARVDYLQIDVSSIKSVRSFVDQFLALNVPLNILINNAG 121

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSK---LACILHAK 120
           V     + ++D  E  FATN++     +++ L     K     +  Q +   L+ I H  
Sbjct: 122 VMFCPFKLTEDGIESQFATNHIGH--FLLTNLLLDKMKSTARESGVQGRIVNLSSIAHTY 181

Query: 121 EVARQLKVIFLLHLLHFLQR----VNKTAQILKFQPC---LQERDANVTINAVHPGIIKT 180
             +  +K   +     + +R     +K + +L        LQE   N+TIN+VHPG++ T
Sbjct: 182 TYSEGIKFQGINDPAGYSERRAYGQSKLSNLLHSNALSRRLQEEGVNITINSVHPGLVTT 241

BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|728817419|gb|KHG02454.1| (Short-chain dehydrogenase TIC 32, chloroplastic [Gossypium arboreum])

HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47
Identity = 107/182 (58.79%), Postives = 129/182 (70.88%), Query Frame = 1

Query: 3   ARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVF 62
           ARD+KKAA++KERI++++P AE+++ EIDLSSLASV+RFC EF ALGLPLNILINN G+F
Sbjct: 91  ARDIKKAAELKERIRKDNPNAEVILCEIDLSSLASVKRFCNEFLALGLPLNILINNAGIF 150

Query: 63  SPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVARQ 122
           S  LE+S+DKFE+TFATNYL     I     T    YNGTRAYAQSKLA ILHAKE+A+Q
Sbjct: 151 SQKLEFSEDKFEMTFATNYLVLILPIYCWCCT--CSYNGTRAYAQSKLATILHAKEIAKQ 210

Query: 123 LKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFITG 182
           LK                             ++ANVTINAVHPGI+KT I RAH+GFITG
Sbjct: 211 LKA----------------------------KNANVTINAVHPGIVKTGIFRAHKGFITG 242

Query: 183 RN 185
           +N
Sbjct: 271 KN 242

BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|778655531|ref|XP_004138098.2| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 9.2e-42
Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           M ARD+KKAA+VKE I++ESPEAEI+V EIDLSSLASV+ FC +F +LGLPLNILINN G
Sbjct: 92  MTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCNQFLSLGLPLNILINNAG 151

Query: 61  VFSPNLEYSDDKFELTFATNYL-----------------------APPCKIISTLETPLT 120
           VFS NLE+S+DK ELTFATNYL                            + S +   + 
Sbjct: 152 VFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHGWVK 211

Query: 121 K-------------YNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
           K             YNGTRAYAQSKLA ILHAKE++RQ                      
Sbjct: 212 KDGLSFRQMLNPNSYNGTRAYAQSKLANILHAKELSRQ---------------------- 271

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                 LQ R+A VTINAVHPGI+KTAIIRAH+GFIT
Sbjct: 272 ------LQGRNARVTINAVHPGIVKTAIIRAHKGFIT 280

BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|700208459|gb|KGN63555.1| (hypothetical protein Csa_1G004220 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 9.2e-42
Identity = 112/217 (51.61%), Postives = 130/217 (59.91%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           M ARD+KKAA+VKE I++ESPEAEI+V EIDLSSLASV+ FC +F +LGLPLNILINN G
Sbjct: 78  MTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCNQFLSLGLPLNILINNAG 137

Query: 61  VFSPNLEYSDDKFELTFATNYL-----------------------APPCKIISTLETPLT 120
           VFS NLE+S+DK ELTFATNYL                            + S +   + 
Sbjct: 138 VFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHGWVK 197

Query: 121 K-------------YNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
           K             YNGTRAYAQSKLA ILHAKE++RQ                      
Sbjct: 198 KDGLSFRQMLNPNSYNGTRAYAQSKLANILHAKELSRQ---------------------- 257

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                 LQ R+A VTINAVHPGI+KTAIIRAH+GFIT
Sbjct: 258 ------LQGRNARVTINAVHPGIVKTAIIRAHKGFIT 266

BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|955316949|ref|XP_006578649.2| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Glycine max])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AARD+KKA +VK+ I++E+P+AE+++ EIDL S  SV+RFC EF AL LPLNILINN G
Sbjct: 86  IAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAG 145

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLT---------------- 120
           +FS NLE+S+DK E+TFATNYL           K+I T E                    
Sbjct: 146 MFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEK 205

Query: 121 -------------KYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
                        KYNGTRAYAQSKLA ILHAKE+A+QLK                    
Sbjct: 206 KDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKA------------------- 265

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                    R+A VTINAVHPGI+KT IIRAH+G IT
Sbjct: 266 ---------RNARVTINAVHPGIVKTGIIRAHKGLIT 274

BLAST of Lsi02G003960 vs. NCBI nr
Match: gi|947115291|gb|KRH63593.1| (hypothetical protein GLYMA_04G186300 [Glycine max])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 104/217 (47.93%), Postives = 126/217 (58.06%), Query Frame = 1

Query: 1   MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGG 60
           +AARD+KKA +VK+ I++E+P+AE+++ EIDL S  SV+RFC EF AL LPLNILINN G
Sbjct: 92  IAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAG 151

Query: 61  VFSPNLEYSDDKFELTFATNYLAPPC-------KIISTLETPLT---------------- 120
           +FS NLE+S+DK E+TFATNYL           K+I T E                    
Sbjct: 152 MFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEK 211

Query: 121 -------------KYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQI 180
                        KYNGTRAYAQSKLA ILHAKE+A+QLK                    
Sbjct: 212 KDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKA------------------- 271

Query: 181 LKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFIT 182
                    R+A VTINAVHPGI+KT IIRAH+G IT
Sbjct: 272 ---------RNARVTINAVHPGIVKTGIIRAHKGLIT 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TIC32_ARATH1.4e-1331.75Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32... [more]
TIC32_PEA3.4e-1228.92Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 S... [more]
RDH14_HUMAN3.8e-1127.78Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1[more]
RDH14_MOUSE1.1e-1027.70Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1[more]
RDH13_HUMAN2.5e-1027.54Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0B0MSH5_GOSAR3.0e-4758.79Short-chain dehydrogenase TIC 32, chloroplastic OS=Gossypium arboreum GN=F383_25... [more]
A0A0A0LNV3_CUCSA6.4e-4251.61Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004220 PE=3 SV=1[more]
I1JXA2_SOYBN2.3e-3947.93Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=2[more]
A0A0R0KER4_SOYBN2.3e-3947.93Uncharacterized protein OS=Glycine max GN=GLYMA_04G186300 PE=3 SV=1[more]
A0A088AWS0_SOYBN2.3e-3947.93Ribitol dehydrogenase-like protein OS=Glycine max PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G50130.11.4e-3547.92 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT4G24050.13.9e-2236.65 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G64590.16.6e-2238.58 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT4G11410.12.1e-1532.26 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT2G37540.12.7e-1532.80 NAD(P)-binding Rossmann-fold superfamily protein[more]
Match NameE-valueIdentityDescription
gi|728817419|gb|KHG02454.1|4.3e-4758.79Short-chain dehydrogenase TIC 32, chloroplastic [Gossypium arboreum][more]
gi|778655531|ref|XP_004138098.2|9.2e-4251.61PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus][more]
gi|700208459|gb|KGN63555.1|9.2e-4251.61hypothetical protein Csa_1G004220 [Cucumis sativus][more]
gi|955316949|ref|XP_006578649.2|3.3e-3947.93PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Glyc... [more]
gi|947115291|gb|KRH63593.1|3.3e-3947.93hypothetical protein GLYMA_04G186300 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR002347SDR_fam
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019685 photosynthesis, dark reaction
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016630 protochlorophyllide reductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G003960.1Lsi02G003960.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 50..61
score: 9.8E-5coord: 156..173
score: 9.
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 3..83
score: 4.
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 2..177
score: 1.3
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 2..123
score: 2.12E-16coord: 154..178
score: 2.12
NoneNo IPR availablePANTHERPTHR24320FAMILY NOT NAMEDcoord: 152..182
score: 1.5E-40coord: 1..123
score: 1.5
NoneNo IPR availablePANTHERPTHR24320:SF100SUBFAMILY NOT NAMEDcoord: 152..182
score: 1.5E-40coord: 1..123
score: 1.5

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G003960Bottle gourd (USVL1VR-Ls)lsilsiB089
Lsi02G003960Bottle gourd (USVL1VR-Ls)lsilsiB096
Lsi02G003960Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi02G003960Bottle gourd (USVL1VR-Ls)lsilsiB110
Lsi02G003960Cucumber (Gy14) v1cgylsiB117
Lsi02G003960Cucumber (Gy14) v1cgylsiB459
Lsi02G003960Cucurbita maxima (Rimu)cmalsiB112
Lsi02G003960Cucurbita maxima (Rimu)cmalsiB208
Lsi02G003960Cucurbita maxima (Rimu)cmalsiB377
Lsi02G003960Cucurbita maxima (Rimu)cmalsiB370
Lsi02G003960Cucurbita maxima (Rimu)cmalsiB655
Lsi02G003960Cucurbita moschata (Rifu)cmolsiB097
Lsi02G003960Cucurbita moschata (Rifu)cmolsiB198
Lsi02G003960Cucurbita moschata (Rifu)cmolsiB356
Lsi02G003960Cucurbita moschata (Rifu)cmolsiB641
Lsi02G003960Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G003960Cucurbita pepo (Zucchini)cpelsiB287
Lsi02G003960Cucurbita pepo (Zucchini)cpelsiB418
Lsi02G003960Cucurbita pepo (Zucchini)cpelsiB537
Lsi02G003960Wild cucumber (PI 183967)cpilsiB021
Lsi02G003960Wild cucumber (PI 183967)cpilsiB353
Lsi02G003960Cucumber (Chinese Long) v2culsiB022
Lsi02G003960Cucumber (Chinese Long) v2culsiB349
Lsi02G003960Melon (DHL92) v3.5.1lsimeB163
Lsi02G003960Melon (DHL92) v3.5.1lsimeB166
Lsi02G003960Melon (DHL92) v3.5.1lsimeB179
Lsi02G003960Watermelon (Charleston Gray)lsiwcgB193
Lsi02G003960Watermelon (97103) v1lsiwmB173
Lsi02G003960Watermelon (97103) v1lsiwmB195
Lsi02G003960Cucumber (Gy14) v2cgyblsiB018
Lsi02G003960Cucumber (Gy14) v2cgyblsiB160
Lsi02G003960Cucumber (Gy14) v2cgyblsiB320
Lsi02G003960Melon (DHL92) v3.6.1lsimedB172
Lsi02G003960Melon (DHL92) v3.6.1lsimedB176
Lsi02G003960Melon (DHL92) v3.6.1lsimedB189
Lsi02G003960Melon (DHL92) v3.6.1lsimedB213
Lsi02G003960Silver-seed gourdcarlsiB233
Lsi02G003960Silver-seed gourdcarlsiB329
Lsi02G003960Silver-seed gourdcarlsiB447
Lsi02G003960Silver-seed gourdcarlsiB919
Lsi02G003960Cucumber (Chinese Long) v3cuclsiB022
Lsi02G003960Cucumber (Chinese Long) v3cuclsiB036
Lsi02G003960Cucumber (Chinese Long) v3cuclsiB372
Lsi02G003960Cucumber (Chinese Long) v3cuclsiB377
Lsi02G003960Watermelon (97103) v2lsiwmbB155
Lsi02G003960Watermelon (97103) v2lsiwmbB167
Lsi02G003960Watermelon (97103) v2lsiwmbB185
Lsi02G003960Watermelon (97103) v2lsiwmbB210
Lsi02G003960Wax gourdlsiwgoB288
Lsi02G003960Wax gourdlsiwgoB210
Lsi02G003960Wax gourdlsiwgoB240
Lsi02G003960Wax gourdlsiwgoB266