Lsi01G020790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G020790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent zinc metalloprotease FtsH 1
Location	chr01 : 29323286 .. 29332861 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACGTTCTATACTCCCCTTTTCCTTGAATAAAGTAAATCCCCGTCTCCTCCGTCTGTCTGCTTTGCTCATAGCTAAAGTTAAAAGCCCTAGGTGAGTTTTGTCGAAGGAAGAAAACGAAAATCAGTTGGAAAAAGGGAAAAATTTGTTCGTGCAATCTCGAAGACGAATCCTAAGCTTCGTCCTCCCTCTCTTTTCGATTTCGCCGCTAGTCTTGGCCTCGCTTCCATCTGGTCGCCATGGATTCGGAAATGAAGCCGCTGTTCAAAGATCTGGGAGGACTGAAAAATGTGGTGGAGCAATTGAAGGATTTTCTCGTCCCATTTATCCATCCGAAGGTGTTTAAGCGGGGCATCGCTCCCACCGTTGGAATGTTGTTGCATGGACCCTCCGGCTCTGGAAAGACCACACTCGCTCGGGCTATTGGAAATGAAACCAACCTCTCCTACTACGAGATTTCAGGTTTATCAGGTACATGTTAATCTTCCAGAATACTAGAAACCTGTATTGGATGATAATAGACCTAATTTTCCTGGTATAATTTTGACATTAAAGTTTCAGTGTCTCTATAATGTATGTAGCTAATCTATGCCGCATATGGTACCAAAAGAAAGGAAAAGTATAATAGGTAGGTGAGAATCTTCAATAGTAATCGTGATGCAACTCTTTAGAGTCTTGGTTTCTTGTAATTCATTTTTGATTATTCTTTGAAGTCTTTTTGTATTAGCTTTATCTTAGCACTCATTAGTCATTAGTTTTATTTCTTGAAGGATCTTGACTTTCTTTAATTTTGTTAGTTGGCTGTTTATTATAAGCCTCCAGCCAACCTCCCTCTATTTAAGAGGCTGTTTGTATTCATTTTAGGAGAATGAATGATATTATCTTTTGAGTGTTATTTGAGTTTCCATCAAATCAAGGAATTAACGTTCAATCATGAAAGGAAAATTGACTGACGGTAGAAATTACTGAATTTTCTGATATTTCATAAGGTAAATGTGTTGAGCTAAATATACACCTCTCTTAATGTGCAGCATCTTTGTGAGTTGGAAATCTTTATAATAATCATTTATTCATTATTTCTTACATTCTTCCCCAAGCTTGATGTTAGGTGACGACCAAACACCAAGGTCGCTTCTAAGAGTATGAAATGGATTTTTGTTTAGGATATCAATTATTTTTTGTGATAATGTCTCTAAGTATGAATGCCAATGTCTCTAAGTGTGAAAGTTATCCAACTCTAGTAACGTGTCATCATAACAATCGATGACAATAAACAATCCTTATTAATAGTAAAATCAAATCAATTTTTCAGGCATATCCATTGAAAATCTCGCCAACGTATTCTCCAAAGCTCTTAGCTCAACACCATCAATAGTTTTCATTGATGAGATTGATGCAATTGCTTCAAAAGAAGAAAATCTTCCTCCATGCACGGATAGACGAATCCTTCTACATCTAAAGATGTGGATGAACAAAATTTATAATTCTAATTGTAAGCCCTAAACTTTTTATTACTCTTTTATCGTGCTCTGAATAAGTAAAAAAAAAAAAACTAAACTAAGAGGCGGAATTACTATACTAAGAAAAGAAGGGAAATGCCGTAAAGGCGAGTTGATCGGGAAATACCTAACAATTAAGTTATTGGTTATTAAATTATTAAATTATTATTATTATTATTATTGTGTTTTTTTTAAAAAGAGGGAAGTGGGAGTTTAGTGGAGTAAAATTAAATAAAAAAAAAAGAAAGAAAAGGGAAATAGAAAAGGGCAAGAGTTAGTCGTGGGAAGGAAAAAAATTCATTGTCTTCATTTCTTTTTCTTCTTCAAAACAAGAGAGCACCGACTATCATCTTCTTCAAAGGGAGAAGCCACCGTTTATGATAAAATTGGTCGGAGAAGGAGAGGATTGAGAGTTCTGGTGAGTTTTGGCCGGAGAGGAAGCAGAAAATCGGAGGAAAGAACACCCTGGTCTGAAGCAGGAAGAAGCTCGAGCAGTCAGTGGTGTTTGGACGACTTCACGCTGTAGAATTCGATTTTGGAGCTGAAATTTTGAGGTTAGTAAGTTAACACAATTCTCTACAACTCTTGTGAAGATTACCTGAGCTGAAAGTGGTTGGAAGTTGATGAATATTTAGGTGGAAAACAGTAGACGAGAAATTTCGCGAAAAGGGGAATATCTCTGGTTTTTCAGTCGGTTTGAGCTTTCTAGGAAGAATTAGAAGCTAAAATTGGTAAGGATAGTTAGATAATTCAATTTATAACAACTTTTATGAAGGATGAGAAATCTGAAAATGAGTGGATATGGATGAATTTTTAGGTTGAACAGAGGGAAGCTGCAGGAATCGAGAAGAATTCTACCTACTGTTCTGAGGTAATTTCCGAGTAATCTAGTGATTTTTAAGCTTTCTTTTCTTCAGATAAGTTGTAGAGGATCATGAAAAGAAGAATTTGATCTAACATTTACTCTTTTTGATTGAGTATTGAGTAAGTTATGAGTTCTTGAAGTATGGCTGAAATGCTAGAAATTATGAGCAGGATCAAAACAGGATTTTCGAGTAGCTACTGATATAAGGGGAATTCTGAAGAAACCATACGTTTTTAGATCTTGTACTCTGAATATGAATTGTAGGGGACTGTAAAATGAAGAGTTTGCCATAAATTTAGTTTTATTTGGTTAAGAATTGAGGAAGTTATGATCAATCAAAAATTGGTATGAATATATGTATGTTTAGATAATGCTTGCTAAGGAGTATTATGAACATCATGAGTTTGGTTAGCAAGTGGCTATGACAAAGACTACAAGCATGTTGAGAACTAACCAAGGGAAACTTATTTTTTTTCAGGACGAATAGAGTTGGAAAAAGCTTACAAGCTGTTGTGAGCTAGTCGACTATAAACTGTGAGTGACAAAATGTCTTTAACAAAGTTTTATAAACTCTTGAGTTAAGCAAGATGCTTTTTATATGAATGAGCTACTTTTATGCAAGTATGATGTGTTGTATCCATGAACTTTATGTGTATGATTTGTAAGTTACTCTGTGTTCCTCGTTTCGTAAATATGTCGATAAGGTTTGACCGTTGAACACAGTTTAGTTAAAAAAATAAATATATAACGATACCTAAGGACACTGAGACGGTATCGAGATAAACATGTAATGATACCTAAGGACATTGAGACGGTATCGAGCTAAATGTGTAATGATACCTAAGGACATGGAGACGGTATCGAGATGAGAATGTAACGATACCTAAGGACGTGGAGACGGTATCGAAATGAGTTTATGTGGCGGTACCTAAGGACCTTGAGACGGTATTGAGATAATTGGGATCCTGATATATGAGGACTTCGGTGACGTATCGGGATAGCCCTAAACAAATGTGTAGGTGTAGTTGATATATATGTATGTGTATGTGTTAGCTCTAAATGTACGCATGATAGTAATGTAATTACGACGTTGAGAGTGTTGAGCTTACTCCACCTCAACTAAGGAGTTAAGAATGTTATGTGCGAATGAGTATTATGTTTTCAGTTGAATAAACGCTGGTAAACTAAGTTTTTGAGATGTTTTATATAAAGAATTCCATTTATGCTAGACAAGCACGTTTTTAGTGGAAATGTTTTATGCCTGTCACTCACTAGACATACGTCTAACGTTTTCTTTTAAATGTTTTCTTACTTCCCAGGTAGCGTACGGTATCCAGGAGCTTGACCTACCCTCGCAAAGTCCTTGCTGCGGTTCCTCTCTTAGTTGTAAATATTAGTCTCTTTTTGTGTTGACTAGCATATAATAGAGAGGGAAAGGATTGGAACTAGAAAAGTATGGTTGTATAAACAATAGTGGGTATGGTTGTATAAATGATAGTGTAACCACTATTTGTATGTATTTAAATGATGTTTGCGTATATAAGTGATGTATGTGATTCACGCTCTTTTCCTAGGTCTAAGAGGGTGATCTAGGGAGAGGGTGTGACACTAATTCTAGAGGTTTTGTCCTTGTGGTTGGAGCAACCAACAAACTAGATAGGATTGAATCGACATTAAGGGAAACCAAGTATTTTACTAAGGATATTGAAATTTGTTTTCCCGATGAAAGTTCTAGGCTAGAAATACTTTCGATCATTACTAACAAATTAAGTCTTGAAAGTAATTTTAATATGTTGAAAGTAGCCAAGGCAACTCCAGGCTATGTGGGACTTGATCTCACAATCTTGGTCGACAAAGCTGTTGATGTCGCGATGAGGAGAATATTTGATAAAAAAGAACGTGATTTGCCTTCATTGGTGGTAGACGAGGAGCATGGGTGGAAGGAATCCTACTCGCTTGATGGGAAGGTGCCTATCATAATTACCATGGCTGACTTTGAGGTGACTAAATGCTTCTGTGTTTTTTTTCCTCTCTCCTGTGGAGCTTCTGTCATATAAGTTATTGATTTTTCTTTCCTTTTCCTTTCTTATAAGTTATTGATATTTCAAATGAATTGTATCAAGGGTTGTTATCAAATATAGAAAAAATGATTCAAACTATTTACAAATATAGAAAAATTTTACTGCCTATCTCGCAATAGAATTCTATCGATTGGACAATAACTATTTGTAAATGGTTTGATATTTTTTTCTGTTTATAATAATTTCCATTGTATTAACTATTTTTTGTCTTTTCTCTCTTGTCTTATCATACTCTACAGGGAGCAATTAAAATGGTGCGACCTTGCTTGAGCAAAGAATGCTTTTTTGCAATTCCTAATGAAAAATGGGAAGATGTAGGAGGGCTTGGAACAACAAAAAGCTATGGTAAAGAGAGGTGTAGTTAAGTGTATAAAGTATCGTGAAGCTTGCAAGGTACTGGTATTGTTATTTTTTTTCTCATTTATATTCGGGATATCATTTTTTTTTGTAGCCCATTAATTTTTTTCTTCCTTACTTCTTTCACACTTATTATAATGGCTTATTCGCTTACATGGCAACTTCTTGTACAAAAAAAAAAGTAATTAATAACTCTTGGCCCTTTGGTTTAGTTTATTTCAAGCTGCTCCCCTTAGTTTTGCAAATCTCCTTTTATCAATGAGATCAATAGTTTTAGAATTACACAACCTTTCTTTTTCATCACTTTTGCAGAGTTGAGAATGTTTCCATGCGATGATCTTGCTGCATTTTTTTTCATAATTTTTCTTCATACAAAATTGATTTCTCTGAACTATTCTTGGATATAGGCACATGGCTTAGAATTGTGGAGCGTGCTTTTGCTATATGGTCCTCCAGGATGTGGTAAGACACTAATTGCTAAGGCCGCTGCAAATGAGGCAGGAGCTAATTTCATTCACGTTGAGGTTTGATATTCAAGTGACTTGAGCTTAAACAATGTACTGTACTACAAAATTTGGTCAATTTTATAGCCTAAATAACTTTTATTACCATGGATTTACTTGTTTCGTAGGGTCACGAGCTCACAAATAGAAATGTTGTAGAAAGCTTGGATGCAGTTCGTGCATTTTTCCGTTGTGCTAAGGCTTGCTCACCTTGCGTTCTTTTTTTTTCATGATGTATGTGACTCGCTATGTTTATTTATTTTTGTTAATGATCATTTGTTATAATATTGACTCGTCAGATCAGACAACTAGGAATATATATATGGTGGTAGTGTCAAATTTTGTGCGTTTATTATTTTGTTCCTTGAACTGTAGGAAGTATTTAATATGACCTCGAACTTTCAAGTTTGTATCCTATTGACTCCAGTGTCTACTATAGTGCCTAATAGGTTCTTCAACTTCCGATTTGATGTCTAATAAGTTTCTAAACCTTTAATTGTGTCTAGTAGGGGTCCTCGGCTTATTTGACTATTTTTAAATTTATATACTTGCTAGACACAAAGTTTACACTTAGGGTCTTGTGAGTCAATTTTTTAAAATTTGATGTCATGAAGACACAAAATTGGAAGAAAAGAGTGTAAAAATCTTGGATCAACAATCAAGTAGAAAGAATATGTGGCTGCAAGAAAAGAGTTGAAAAAGGACAGGAAAAATCTAAAGAGATGAGCCTGAGGTCAAACCTAGAGTTTCTTGTTTCCATTTATAAAGAGTATGTAGGTGTAATCTAGAATTATTCTATTCAAAATTCCTTCTCCAACTTCCGATAGGAATTTCTTTTCCTTTTCTTATTTTAATTAGAGAAATATTTAAATAGGTATTGCAATAATTTTTTAAACAAAAACTAATTATTTAATTTTGAACTTACTACTTAAGTTATCCTAAAACAGCAAAGCCTTGTGACTGGGTGCGAGTTCAAATTGGGGATGGTGCCTCCACTTTTTTTGGGTAGACCACTGGATTGTTGATGGAGCATTGGCTACATGTTTCATTCTTTTCTTTCTTCTGCCTTTCTCTACACAAAAGTGTGGATGGCAAATTTGTTTGGAACCTTGAGGTATGTTTTTGGGAAAAATATTTGGGGTGCATCCTGGGCTACCTTGTGCAACCCACACAAGTGTCGAATTACAAGTTGTCATGTGATAACCTTTCTCTCTCTCTCTTTTTATTTATTTTTTTCAAAAAAAGATATATTGTTTAGTATTCTTTTTCTTTTGTGGTTGAAGGGAACGCATAGAGATGGGTGTAGCCAAGTATTACTCCGTTTTTGGGGTCTTCACCCTCGTGGAATTTCAATTGATTGGAGTTCTTGGAGTAGAATTTTAATTGCCCTCAACTCGAACGTGGCTTGATCTATAGACGTAGAGAGCAATTTCTCTCTTTCATCCTCATGGGGCATCCTTTTAAAAGGGAGAATAAAAAAAACTCTTATGATGGCACGTTACTAGAGTTTTCCTTTGGGCACTCCGGATGGATATGGAGAGAAATCAAAGGCATTTTGCAGAATAGGAGAGTACTTTGGAGATAATTTCTTCCAATGTGTTATTTTATTGCTTTATGTACCTTGGTGTAAATTATCTCTTCTTTTTCTTTTTTTTTTTAAATCAATTTGATACATACATACATATATATATATATATATGAAATTGTAAGAGCTCAGCTCGCCCTCTCCCTAGAATGGTTATGAAGAAGTGTAGTAGGTTGATATCAGGGTTTGATTTGTGATATTTCTTACTCGTTTTCTAATTATTTGTAGGTGGATGCTTTAACAGCAAAAGTTGGTCAAGGAGGAGAGAAAGAGGTTGTGAGCCTATTACGAAGCCAGGTTCAATGAATTGAGTTTCTTGATGATTTAACTTATACTTGGGCCTTTTCATCTTCATATGTGTCTTTTTGTCTTCTTTTCATGCTGGTTGTGGACCCACATTTTATTATTTATTTACTTATTCATTATTTATTATTATTATTGTAGTTATGCATAGCGTTAGATGAAGTAAAACAATCAGGAGTCTTTGTTATTGGTGCTACGAATAGGTAAATGATTCTTGGGAGAAAAAAAAATACATTTGGATTTCTGAGATCTAAGTTAAGTTGTATTTAGGTTTGTAAGTTTTCAAATGCTAAATTTTAAAAACAAATTTTAATAGAGAGGAAACAAAAACAAATTTAAAAAACCAAAAACCATTTTGCTTTTGAAGATTGAGCTTGTGTTCTCTTGATTTCTTACAATAACTCTCATCTTTTCTAAGTTGAAGTGTTAAATACTTTGCTGAATTTAAAAACAAAATCATGTTTTCGAAAATTAAGTTTTTAGTTTTTTAAAATTCTGCTTGATTTTTGAAAACATTGGCAGAAAGTAGATAACAAAACAAAACTAGAGGTTAGGGTGTTTATAGGCCTAAATTTTCAAAAACTTGAAATTGCACCAAATGGTTACCAAACGAGGTCTTATTAATTTGATTTGATATTTTATTTATTAATTTCAAAATTTATGTGGCATAAATTTTTTCTATTTTAATTTATTACAAACTAAAATTAAATCAAATTTTATTAAATAGAAAAATATTAAATGTATGAAAAACAAATCCAGAAAAATACAACCTTCCACATGTTCATCTTCTTTTTTTCCTCAAGATAAAAACTATATTTCTTTTATTCTCCTTCTCCCTCTTTCTTCTGCACCAGTTTTATAATTTAATGTTTTTTTTTAACAAAAAAAAAAAAAAAAAAAAAATTTTATATTTTGTTTAAAAGGAAAGGACACATACTTTTTATTTTTTAGTTTCAAGAAATTTTAATAAAGTGAGGTCTTGTGAAACTCACACTTTAATATATTTATGTCATGTCAACATCAAAATTACCGATAGAGACAAAACGAAAGAAATAATCCAAAATTTTAATAATTAAAATTTCAAATTTGAAAACTCAAATCCAAATGCAACTTAAGTAACTTAAGTTGGTCTTTAAAGTGTATTTTTTCATTACGATTCTTTTGGTTTGAATTATTTGTTGATTCTCTTAAATTTATTTTGATAGACTTGAGGTCATGGACCTTGCCGTGTTACGATCGGGTCGATTTGGCCACCGTCTTTATGTGCCTTTGCCTAGTCCAAGTGAGCGAGGCCTAATTCTACAAGTTCATGGAAGAAAGAGGCCCATTGACACCAGTGTAGATTTAATTGCCATTGGGCAAATGGAGGCATGTGAGAATTTTAGTGGGGCTGATCTTCTTGCACTGGTTTGTTCGTTTTCATGTTGATGTTGGTGCTTTATTTGATTTTGTCTTTCTGAAAAATAAGTCATTGAGCTATGATAACACTCTCTTATTGAAGGTTGGACGTGAATTTAAAAATATGCATGTCCCCAATAACAATAAAATTCAAATTCAAAGCTCTTTTTTTTTTTTGGAAAAAATGTCAACCACATAAGGATGTAGTCAATGTTGAAATTAATGTAGGAATCTTCTTATGACAGATGAATGAAGCTGCAATGGCTGCTCTTAATGAGAAGTGGACATCAAGTGGTGATAATTTGGCCATCATCAAGATGGTCCACTTTGAGTTCGGGCTAGCTAAAGTAACTCCATCCTTGTCTGAAAAGGTATTATTTCTCAGATCAAAATAATGATATTTAGGGGAAATCAACTTTTTAAGAGGATAAAAATGGAATCAAGTGGAAATAGTTATGAATCAGTGACATGGAGTAGAAATTGATTTACTAACCTGAGTTTTAATGAATTTCAGTGATAAAGTCGTTTAGAAATATAAATTGATTTTTTTAAATAATATTTGCCAAACTTTCATATTTTAATGGTTGTTTATTTTTTCATCTTTGTTCCTTGGTAACAGGAAATAGAAAGTGGCAGATTGTTATTGTAAAGGCACCTCTTAACATAGCTGTTATACTTGGCAAACAATCAAACAAATCTCTCTAGTTTCAGTACACAGTGGAATTGAAAACAGGGAGTTGTGGTCAGCTTCGGCTGGTTCTTGGTGAACCTTTGTTTTTTTTTACAATACCTCGGCTTCGAATTAGTTTTGGTCGATTCTTTTTAGAACGGTCTGTATATGTGTCTAGTATATACGAATTCTTTGGTTAATTTGCAATATAAAAATTTTAAATGATTTTCGACAAATGTGGAGTATGAGAATTTGAACCCGACCTTAAAGAAATGAGGGCATGCCAATTATTGTTAAGCTATGTTAATGTTTGTG

mRNA sequence

CTTACGTTCTATACTCCCCTTTTCCTTGAATAAAGTAAATCCCCGTCTCCTCCGTCTGTCTGCTTTGCTCATAGCTAAAGTTAAAAGCCCTAGGTGAGTTTTGTCGAAGGAAGAAAACGAAAATCAGTTGGAAAAAGGGAAAAATTTGTTCGTGCAATCTCGAAGACGAATCCTAAGCTTCGTCCTCCCTCTCTTTTCGATTTCGCCGCTAGTCTTGGCCTCGCTTCCATCTGGTCGCCATGGATTCGGAAATGAAGCCGCTGTTCAAAGATCTGGGAGGACTGAAAAATGTGGTGGAGCAATTGAAGGATTTTCTCGTCCCATTTATCCATCCGAAGGTGTTTAAGCGGGGCATCGCTCCCACCGTTGGAATGTTGTTGCATGGACCCTCCGGCTCTGGAAAGACCACACTCGCTCGGGCTATTGGAAATGAAACCAACCTCTCCTACTACGAGATTTCAGGTTTATCAGGCATATCCATTGAAAATCTCGCCAACGTATTCTCCAAAGCTCTTAGCTCAACACCATCAATAGATATTGAAATTTGTTTTCCCGATGAAAGTTCTAGGCTAGAAATACTTTCGATCATTACTAACAAATTAAGTCTTGAAAGTAATTTTAATATGTTGAAAGTAGCCAAGGCAACTCCAGGCTATGTGGGACTTGATCTCACAATCTTGGTCGACAAAGCTGTTGATGTCGCGATGAGGAGAATATTTGATAAAAAAGAACGTGATTTGCCTTCATTGGTGGTAGACGAGGAGCATGGGTGGAAGGAATCCTACTCGCTTGATGGGAAGGTGCCTATCATAATTACCATGGCTGACTTTGAGGAGGGCTTGGAACAACAAAAAGCTATGGTAAAGAGAGGTGTAGTTAAGTGTATAAAGTATCGTGAAGCTTGCAAGCCCATTAATTTTTTTCTTCCTTACTTCTTTCACACTTATTATAATGGCTTATTCGCTTACATGGCAACTTCTTGTACAAAAAAAAAAGCACATGGCTTAGAATTGTGGAGCGTGCTTTTGCTATATGGTCCTCCAGGATGTGGTAAGACACTAATTGCTAAGGCCGCTGCAAATGAGGCAGGAGCTAATTTCATTCACGTTGAGGGTCACGAGCTCACAAATAGAAATGTTGTAGAAAGCTTGGATGCAGTTCGTGCATTTTTCCGTTGTGCTAAGGCTTGCTCACCTTGCGTGGATGCTTTAACAGCAAAAGTTGGTCAAGGAGGAGAGAAAGAGGTTGTGAGCCTATTACGAAGCCAGTTATGCATAGCACTTGAGGTCATGGACCTTGCCGTGTTACGATCGGGTCGATTTGGCCACCGTCTTTATGTGCCTTTGCCTAGTCCAAGTGAGCGAGGCCTAATTCTACAAGTTCATGGAAGAAAGAGGCCCATTGACACCAGTGTAGATTTAATTGCCATTGGGCAAATGGAGGCATGTGAGAATTTTAGTGGGGCTGATCTTCTTGCACTGATGAATGAAGCTGCAATGGCTGCTCTTAATGAGAAGTGGACATCAAGTGGTGATAATTTGGCCATCATCAAGATGGTCCACTTTGAGTTCGGGCTAGCTAAAGTAACTCCATCCTTGTCTGAAAAGGAAATAGAAAGTGGCAGATTGTTATTGTAAAGGCACCTCTTAACATAGCTGTTATACTTGGCAAACAATCAAACAAATCTCTCTAGTTTCAGTACACAGTGGAATTGAAAACAGGGAGTTGTGGTCAGCTTCGGCTGGTTCTTGGTGAACCTTTGTTTTTTTTTACAATACCTCGGCTTCGAATTAGTTTTGGTCGATTCTTTTTAGAACGGTCTGTATATGTGTCTAGTATATACGAATTCTTTGGTTAATTTGCAATATAAAAATTTTAAATGATTTTCGACAAATGTGGAGTATGAGAATTTGAACCCGACCTTAAAGAAATGAGGGCATGCCAATTATTGTTAAGCTATGTTAATGTTTGTG

Coding sequence (CDS)

ATGGATTCGGAAATGAAGCCGCTGTTCAAAGATCTGGGAGGACTGAAAAATGTGGTGGAGCAATTGAAGGATTTTCTCGTCCCATTTATCCATCCGAAGGTGTTTAAGCGGGGCATCGCTCCCACCGTTGGAATGTTGTTGCATGGACCCTCCGGCTCTGGAAAGACCACACTCGCTCGGGCTATTGGAAATGAAACCAACCTCTCCTACTACGAGATTTCAGGTTTATCAGGCATATCCATTGAAAATCTCGCCAACGTATTCTCCAAAGCTCTTAGCTCAACACCATCAATAGATATTGAAATTTGTTTTCCCGATGAAAGTTCTAGGCTAGAAATACTTTCGATCATTACTAACAAATTAAGTCTTGAAAGTAATTTTAATATGTTGAAAGTAGCCAAGGCAACTCCAGGCTATGTGGGACTTGATCTCACAATCTTGGTCGACAAAGCTGTTGATGTCGCGATGAGGAGAATATTTGATAAAAAAGAACGTGATTTGCCTTCATTGGTGGTAGACGAGGAGCATGGGTGGAAGGAATCCTACTCGCTTGATGGGAAGGTGCCTATCATAATTACCATGGCTGACTTTGAGGAGGGCTTGGAACAACAAAAAGCTATGGTAAAGAGAGGTGTAGTTAAGTGTATAAAGTATCGTGAAGCTTGCAAGCCCATTAATTTTTTTCTTCCTTACTTCTTTCACACTTATTATAATGGCTTATTCGCTTACATGGCAACTTCTTGTACAAAAAAAAAAGCACATGGCTTAGAATTGTGGAGCGTGCTTTTGCTATATGGTCCTCCAGGATGTGGTAAGACACTAATTGCTAAGGCCGCTGCAAATGAGGCAGGAGCTAATTTCATTCACGTTGAGGGTCACGAGCTCACAAATAGAAATGTTGTAGAAAGCTTGGATGCAGTTCGTGCATTTTTCCGTTGTGCTAAGGCTTGCTCACCTTGCGTGGATGCTTTAACAGCAAAAGTTGGTCAAGGAGGAGAGAAAGAGGTTGTGAGCCTATTACGAAGCCAGTTATGCATAGCACTTGAGGTCATGGACCTTGCCGTGTTACGATCGGGTCGATTTGGCCACCGTCTTTATGTGCCTTTGCCTAGTCCAAGTGAGCGAGGCCTAATTCTACAAGTTCATGGAAGAAAGAGGCCCATTGACACCAGTGTAGATTTAATTGCCATTGGGCAAATGGAGGCATGTGAGAATTTTAGTGGGGCTGATCTTCTTGCACTGATGAATGAAGCTGCAATGGCTGCTCTTAATGAGAAGTGGACATCAAGTGGTGATAATTTGGCCATCATCAAGATGGTCCACTTTGAGTTCGGGCTAGCTAAAGTAACTCCATCCTTGTCTGAAAAGGAAATAGAAAGTGGCAGATTGTTATTGTAA

Protein sequence

MDSEMKPLFKDLGGLKNVVEQLKDFLVPFIHPKVFKRGIAPTVGMLLHGPSGSGKTTLARAIGNETNLSYYEISGLSGISIENLANVFSKALSSTPSIDIEICFPDESSRLEILSIITNKLSLESNFNMLKVAKATPGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHGWKESYSLDGKVPIIITMADFEEGLEQQKAMVKRGVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCVDALTAKVGQGGEKEVVSLLRSQLCIALEVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTSSGDNLAIIKMVHFEFGLAKVTPSLSEKEIESGRLLL

Homology

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BLAST of Lsi01G020790 vs. Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 9.7e-56
Identity = 152/415 (36.63%), Postives = 218/415 (52.53%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL  +   + EI    PDE +R EILS++  KL LE  F+  ++A+ T
Sbjct: 383 IGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLT 442

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHGWKESYSLDGKVPIIITMAD 198
           PG+VG DL  +   A   A++RI D ++ +      D++   +  +  +    + + M+D
Sbjct: 443 PGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMSD 502

Query: 199 FEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKA 258
           FEE +   +A + R    +V  +K+ +     +  L +      N             KA
Sbjct: 503 FEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQF------NRYIVRPIKKPDIYKA 562

Query: 259 HGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRC 318
            G++L +  LLYGPPGCGKTLIAKAAANEAGANF+H++G EL N+ V ES  A+R  F+ 
Sbjct: 563 FGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQR 622

Query: 319 AKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL-----------------EV 378
           A+ C+PC      VDALT   G+ G   VV  L +Q  + L                 +V
Sbjct: 623 ARTCAPCVIFFDEVDALTTSRGKEG-AWVVERLLNQFLVELDGGERRNVYVIGATNRPDV 682

Query: 379 MDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGAD 438
           +D A LR GRFG+ LYVPLP+  ER  IL+   RK+PID SVDL  I +   CE FSGAD
Sbjct: 683 VDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAK-NNCEGFSGAD 742

Query: 439 LLALMNEAAMAALNEKWTSSGDN--------LAIIKMVHFEFGLAKVTPSLSEKE 458
           L  L+ +A   A+ E   SS  +           IK  HFE  L+ V+PS+++++
Sbjct: 743 LAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQ 789

[Close]

BLAST of Lsi01G020790 vs. Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-37
Identity = 128/414 (30.92%), Postives = 195/414 (47.10%), Query Frame = 1


Query: 99  DIEICFPDESSRLEILSIITNKLSLESNFNMLKVAKATPGYVGLDLTILVDKAVDVAMRR 158
           +IEI  PD+  R EIL I T K+ L  + ++ ++A+ T G+VG DL  L  +A   A+RR
Sbjct: 344 EIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRR 403

Query: 159 I---FDKKERDLPSLVVDEEHGWKESY---------SLDGKVPIIITMADFEE--GLEQQ 218
           +    D +  ++P+ V++     +E +         S   +V + +    +E+  GLE  
Sbjct: 404 VLPEIDIEAEEIPAEVIENLKVTREDFMEALKNIEPSAMREVLVEVPNVKWEDIGGLEHA 463

Query: 219 KAMVKRGVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLL 278
           K  +   V   +KY E  +  N                        K   G      +LL
Sbjct: 464 KQELMEAVEWPLKYPEVFRAANI-----------------------KPPRG------ILL 523

Query: 279 YGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV--- 338
           +GPPG GKTL+AKA ANE+ ANFI V+G EL ++ V ES   VR  FR A+  +PCV   
Sbjct: 524 FGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFF 583

Query: 339 ---DALTAKVGQGGEKEVVSLLRSQLCIAL------------------EVMDLAVLRSGR 398
              D+L  + G  G+  V   + SQL   L                  +++D A+LR GR
Sbjct: 584 DEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGR 643

Query: 399 FGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAM 458
               +Y+P P    R  I ++H R +P+   V++  +   E  E +SGAD+ A+  EA M
Sbjct: 644 LERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELA--EKTEGYSGADIEAVCREAGM 703

Query: 459 AAL---------NEKWTSSGDNLAIIKMVHFEFGLAKVTPSLSEKEIESGRLLL 466
            A+          E+   +   L I K  HFE  L KV PSL+++++E    L+
Sbjct: 704 LAIRELIKPGMTREEAKEAAKKLKITKK-HFEEALKKVRPSLTKEDVEKYEKLI 725

[Close]

BLAST of Lsi01G020790 vs. Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-35
Identity = 99/234 (42.31%), Postives = 131/234 (55.98%), Query Frame = 1


Query: 250 KKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRA 309
           K K  G++  + +L+YGPPGCGKTL+AKA A+E  ANFI V+G EL N+ V ES  AVR 
Sbjct: 591 KYKNMGIDSPAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQ 650

Query: 310 FFRCAKACSPCV------DALTAKVGQGG-------EKEVVSLL--------RSQLCIAL 369
            F+ A A SPCV      DAL  K G G        E+ V  LL        RS++ I  
Sbjct: 651 VFQRAAASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIA 710

Query: 370 -----EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEAC 429
                +++D A+ R GR    +YVPLPSP ER  IL+    K PI   VDLI +G    C
Sbjct: 711 ATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRC 770

Query: 430 ENFSGADLLALMNEAAMAALNEKWTSSGDNLAIIKMVHFEFGLAKVTPSLSEKE 458
            +FSGADL  L+ EAA  A++  + ++      + M  F F L+K+ PS+S K+
Sbjct: 771 HSFSGADLSLLVKEAANHAISRGFDNNSTEPDTVTMEDFIFALSKIKPSVSRKD 824

[Close]

BLAST of Lsi01G020790 vs. Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 134.8 bits (338), Expect = 2.4e-30
Identity = 121/406 (29.80%), Postives = 173/406 (42.61%), Query Frame = 1


Query: 99  DIEICFPDESSRLEILSIITNKLSLESNFNMLKVAKATPGYVGLDLTILVDKAVDVAMRR 158
           +++I  PD + RLEIL I T  + L  + ++ +VA  T G+VG DL  L  +A   A+R 
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR- 425

Query: 159 IFDKKERDLPSLVVDEEHGWKESYSLDGKV--PIIITMADFEEGLEQQKAMVKRGVVKCI 218
               K+ DL  L         E  ++D +V   + +TM DF   L Q      R  V  +
Sbjct: 426 ----KKMDLIDL---------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 485

Query: 219 KYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIA 278
             +   + I              L  Y      K    G+     +L YGPPGCGKTL+A
Sbjct: 486 P-QVTWEDIGGLEDV--KRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 545

Query: 279 KAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV----------DALTA 338
           KA ANE  ANFI ++G EL      ES   VR  F  A+  +PCV           A   
Sbjct: 546 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 605

Query: 339 KVGQGG------------EKEVVSLLRSQLCIAL----EVMDLAVLRSGRFGHRLYVPLP 398
            +G GG            E + +S  ++   I      +++D A+LR GR    +Y+PLP
Sbjct: 606 NIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 665

Query: 399 SPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTS- 458
               R  IL+ + RK P+   VDL  + +M     FSGADL  +   A   A+ E   S 
Sbjct: 666 DEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRESIESE 725

[Close]

BLAST of Lsi01G020790 vs. Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 134.4 bits (337), Expect = 3.1e-30
Identity = 121/406 (29.80%), Postives = 173/406 (42.61%), Query Frame = 1


Query: 99  DIEICFPDESSRLEILSIITNKLSLESNFNMLKVAKATPGYVGLDLTILVDKAVDVAMRR 158
           +++I  PD + RLEIL I T  + L  + ++ +VA  T G+VG DL  L  +A   A+R 
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR- 425

Query: 159 IFDKKERDLPSLVVDEEHGWKESYSLDGKV--PIIITMADFEEGLEQQKAMVKRGVVKCI 218
               K+ DL  L         E  ++D +V   + +TM DF   L Q      R  V  +
Sbjct: 426 ----KKMDLIDL---------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 485

Query: 219 KYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIA 278
             +   + I              L  Y      K    G+     +L YGPPGCGKTL+A
Sbjct: 486 P-QVTWEDIGGLEDV--KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 545

Query: 279 KAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV----------DALTA 338
           KA ANE  ANFI ++G EL      ES   VR  F  A+  +PCV           A   
Sbjct: 546 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 605

Query: 339 KVGQGG------------EKEVVSLLRSQLCIAL----EVMDLAVLRSGRFGHRLYVPLP 398
            +G GG            E + +S  ++   I      +++D A+LR GR    +Y+PLP
Sbjct: 606 NIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 665

Query: 399 SPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTS- 458
               R  IL+ + RK P+   VDL  + +M     FSGADL  +   A   A+ E   S 
Sbjct: 666 DEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRESIESE 725

[Close]

BLAST of Lsi01G020790 vs. TrEMBL
Match: A0A0A0L3U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506870 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.4e-82
Identity = 200/438 (45.66%), Postives = 251/438 (57.31%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++R EIL+++T+ L LE +F++LK+A+AT
Sbjct: 395 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLEGSFDLLKIARAT 454

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWKESYSLDGKVPIIIT 198
           PG+VG DLT L +KA ++AM+RI D+++ +L +     EH    W++ +  +    + IT
Sbjct: 455 PGFVGADLTALANKAGNLAMKRIIDQRKCELSTDCAANEHIEDWWRQPWLPEEMEKLAIT 514

Query: 199 MADFEE--------------------------GLEQQKAMVKRGVVKCIKYREACKPINF 258
           M DFEE                          GLEQ +A   R VV+ +KY E       
Sbjct: 515 MIDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFDRYVVRRVKYPED------ 574

Query: 259 FLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANF 318
                    Y G               G++L +  LLYGPPGCGKTLIAKA ANEAGANF
Sbjct: 575 ---------YEGF--------------GVDLATGFLLYGPPGCGKTLIAKAVANEAGANF 634

Query: 319 IHVEGHELTNRNVVESLDAVRAFFRCAKACSPC------VDALTAKVGQGGEKEVVSLLR 378
           IH++G EL N+ V ES  AVR  F  A+ CSPC      VDALT K G+ G   VV  L 
Sbjct: 635 IHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLL 694

Query: 379 SQLCIAL------------------EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHG 438
           +QL I L                  EV+D A+LR GRFG  LYVPLP P+ERGL+L+  G
Sbjct: 695 NQLLIELDGAEQRRGVFVIGATNRPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALG 754

Query: 439 RKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTSSGDNL----AIIKM 458
           RK+PID SVDL+AIGQMEACENFSGADL ALMNEAAMAAL EK T    N+      IKM
Sbjct: 755 RKKPIDVSVDLLAIGQMEACENFSGADLAALMNEAAMAALEEKLTLDNSNIESASCTIKM 802

[Close]

BLAST of Lsi01G020790 vs. TrEMBL
Match: A0A061F4A3_THECC (Cell division control protein 48 C isoform 2 OS=Theobroma cacao GN=TCM_030531 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.3e-78
Identity = 190/413 (46.00%), Postives = 243/413 (58.84%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE +R EILS++T  L LE +F++LK+A+AT
Sbjct: 378 IGATNRPDAVDPALRRPGRFDREIVLGVPDEIARHEILSVLTRNLRLEGSFDLLKIARAT 437

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHG---WKESYSLDGKVPIIIT 198
           PG+VG DL  L +KA ++AM+RI D+++ +     +DEE     W++ +  +    + IT
Sbjct: 438 PGFVGADLAALANKAGNLAMKRIIDQRKHEFSRESIDEEQADEWWRQPWLPEEMEKLTIT 497

Query: 199 MADFEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTK 258
           MADFEE  +  +   +R     +  +K+ +       FL   F  Y      +       
Sbjct: 498 MADFEEAAKMVQPSSRREGFSTIPNVKWEDVGGLE--FLRQEFDRYIVRRIKFPEDYAE- 557

Query: 259 KKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAF 318
               G++L +  LLYGPPGCGKTLIAKA ANEAGANFIH++G EL N+ V ES  AVR  
Sbjct: 558 ---FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTL 617

Query: 319 FRCAKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL---------------- 378
           F  A+ CSPC      VDALT K G+ G   V  LL  QL I L                
Sbjct: 618 FSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQQLLIELDGADQRRGVYVIGATN 677

Query: 379 --EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENF 438
             EVMD AVLR GRFG  LYVPLP+P ERGLIL+   RK+PID SVDL A+G+MEACEN 
Sbjct: 678 RPEVMDRAVLRPGRFGKLLYVPLPNPDERGLILKALARKKPIDASVDLSALGRMEACENL 737

Query: 439 SGADLLALMNEAAMAALNEKWTSSG--DNLAIIKMVHFEFGLAKVTPSLSEKE 458
           SGADL ALMNEAAMAAL EK TS+G  +    IK  HFE  L+K++PS+S+K+
Sbjct: 738 SGADLSALMNEAAMAALEEKLTSTGISETSLTIKTFHFERALSKISPSVSDKQ 784

[Close]

BLAST of Lsi01G020790 vs. TrEMBL
Match: A0A0D2SEH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G148700 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.4e-77
Identity = 191/419 (45.58%), Postives = 249/419 (59.43%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++RLEILS++T  L LE +F++LK+A+AT
Sbjct: 409 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARLEILSVLTGNLRLEGSFDLLKIARAT 468

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHG---WKESYSLDGKVPIIIT 198
           PG+VG DL+ L +KA ++AM+RI D+++ +     +D+E     W++ +  D    + IT
Sbjct: 469 PGFVGADLSALANKAGNLAMKRIIDQRKHEFSREPIDDEQADQWWRQPWLPDEMEKLAIT 528

Query: 199 MADFEEGLEQQKAMVKRGVVKCIKYR--EACKPINFFLPYFFHTYYNGLFAYMATSCTKK 258
           MADFEE  +  +   +R     I     E    ++F L   F  Y      +      K 
Sbjct: 529 MADFEEATKMVQPSSRREGFSSIPNVTWENVGGLDF-LREEFERYIVRRIKFPE----KY 588

Query: 259 KAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFF 318
              G++L +  LLYGPPGCGKTLIAKA ANEAGANFIH++G EL N+ V ES  AVR  F
Sbjct: 589 AEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 648

Query: 319 RCAKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL----------------- 378
             A+ CSPC      VDALT K G+ G   VV  L +QL I L                 
Sbjct: 649 SRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLLNQLLIELDGADQRCGVFVIGATNR 708

Query: 379 -EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFS 438
            EVMD AVLR GRFG  LYVPLPSP ERGLIL+   RK+P+D SVDL AIG+MEACEN S
Sbjct: 709 PEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALARKKPVDESVDLSAIGRMEACENLS 768

Query: 439 GADLLALMNEAAMAALNEKW--TSSGDNLAIIKMVHFEFGLAKVTPSLSEKEIESGRLL 465
           GADL ALMNEAAM AL +K   T + ++   IK  HFE  L+K++PS+S+K+ +  ++L
Sbjct: 769 GADLSALMNEAAMVALYDKLSSTETSEDSCTIKTCHFERALSKISPSVSDKQKQFYKVL 821

[Close]

BLAST of Lsi01G020790 vs. TrEMBL
Match: A0A061F3G0_THECC (Cell division control protein 48 C isoform 1 OS=Theobroma cacao GN=TCM_030531 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.4e-77
Identity = 190/413 (46.00%), Postives = 244/413 (59.08%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE +R EILS++T  L LE +F++LK+A+AT
Sbjct: 416 IGATNRPDAVDPALRRPGRFDREIVLGVPDEIARHEILSVLTRNLRLEGSFDLLKIARAT 475

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHG---WKESYSLDGKVPIIIT 198
           PG+VG DL  L +KA ++AM+RI D+++ +     +DEE     W++ +  +    + IT
Sbjct: 476 PGFVGADLAALANKAGNLAMKRIIDQRKHEFSRESIDEEQADEWWRQPWLPEEMEKLTIT 535

Query: 199 MADFEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTK 258
           MADFEE  +  +   +R     +  +K+ +       FL   F  Y      +       
Sbjct: 536 MADFEEAAKMVQPSSRREGFSTIPNVKWEDVGGLE--FLRQEFDRYIVRRIKFPEDYAE- 595

Query: 259 KKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAF 318
               G++L +  LLYGPPGCGKTLIAKA ANEAGANFIH++G EL N+ V ES  AVR  
Sbjct: 596 ---FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTL 655

Query: 319 FRCAKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL---------------- 378
           F  A+ CSPC      VDALT K G+ G   VV  L +QL I L                
Sbjct: 656 FSRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLLNQLLIELDGADQRRGVYVIGATN 715

Query: 379 --EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENF 438
             EVMD AVLR GRFG  LYVPLP+P ERGLIL+   RK+PID SVDL A+G+MEACEN 
Sbjct: 716 RPEVMDRAVLRPGRFGKLLYVPLPNPDERGLILKALARKKPIDASVDLSALGRMEACENL 775

Query: 439 SGADLLALMNEAAMAALNEKWTSSG--DNLAIIKMVHFEFGLAKVTPSLSEKE 458
           SGADL ALMNEAAMAAL EK TS+G  +    IK  HFE  L+K++PS+S+K+
Sbjct: 776 SGADLSALMNEAAMAALEEKLTSTGISETSLTIKTFHFERALSKISPSVSDKQ 821

[Close]

BLAST of Lsi01G020790 vs. TrEMBL
Match: F6HG51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02600 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.1e-77
Identity = 193/427 (45.20%), Postives = 249/427 (58.31%), Query Frame = 1


Query: 65  ETNLSYYEISGLSGISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLS 124
           E+ +S+++   +  I   N  +    AL      D EI    PDES+R +ILS+IT  L 
Sbjct: 392 ESEISHHKPGYVLVIGATNRPDAVDPALRRPGRFDREIALGVPDESARADILSVITRNLR 451

Query: 125 LESNFNMLKVAKATPGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWK 184
           LE +F++ K+A++TPG+VG DL  L +KA ++AM+RI D+++ +L   + DEEH    W+
Sbjct: 452 LEGSFDLAKLARSTPGFVGADLAALANKAGNLAMKRIIDRRKFELSRELTDEEHIEDWWR 511

Query: 185 ESYSLDGKVPIIITMADFEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTY 244
           + +  +    + ITMADFEE  +  +   +R     +  +++ +       FL   F  Y
Sbjct: 512 QPWLPEEMEKLSITMADFEEAAKMVQPSSRREGFSTIPNVRWEDVGGLD--FLRQEFDRY 571

Query: 245 YNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELT 304
                 Y        +  G++L +  LLYGPPGCGKTLIAKA ANEAGANFIH++G EL 
Sbjct: 572 IVRRIKYPEDY----EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 631

Query: 305 NRNVVESLDAVRAFFRCAKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL-- 364
           N+ V ES  AVR  F  A+ CSPC      VDALT K G+ G   VV  L +QL I L  
Sbjct: 632 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLLNQLLIELDG 691

Query: 365 ----------------EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSV 424
                           EVMD AVLR GRFG  LYVPLPSP ERGLIL+   RK+PID SV
Sbjct: 692 ADQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALARKKPIDASV 751

Query: 425 DLIAIGQMEACENFSGADLLALMNEAAMAALNEKWT--SSGDNLAIIKMVHFEFGLAKVT 458
           DLIAIGQ EAC N SGADL ALMNEAAMAAL EK    SSG     I   HF+  L K++
Sbjct: 752 DLIAIGQKEACNNLSGADLSALMNEAAMAALEEKLADCSSGAISWTINAKHFDQALGKIS 811

[Close]

BLAST of Lsi01G020790 vs. TAIR10
Match: AT3G01610.1 (AT3G01610.1 cell division cycle 48C)

HSP 1 Score: 219.2 bits (557), Expect = 5.5e-57
Identity = 152/415 (36.63%), Postives = 218/415 (52.53%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL  +   + EI    PDE +R EILS++  KL LE  F+  ++A+ T
Sbjct: 383 IGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLT 442

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHGWKESYSLDGKVPIIITMAD 198
           PG+VG DL  +   A   A++RI D ++ +      D++   +  +  +    + + M+D
Sbjct: 443 PGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMSD 502

Query: 199 FEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKA 258
           FEE +   +A + R    +V  +K+ +     +  L +      N             KA
Sbjct: 503 FEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQF------NRYIVRPIKKPDIYKA 562

Query: 259 HGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRC 318
            G++L +  LLYGPPGCGKTLIAKAAANEAGANF+H++G EL N+ V ES  A+R  F+ 
Sbjct: 563 FGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQR 622

Query: 319 AKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL-----------------EV 378
           A+ C+PC      VDALT   G+ G   VV  L +Q  + L                 +V
Sbjct: 623 ARTCAPCVIFFDEVDALTTSRGKEG-AWVVERLLNQFLVELDGGERRNVYVIGATNRPDV 682

Query: 379 MDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGAD 438
           +D A LR GRFG+ LYVPLP+  ER  IL+   RK+PID SVDL  I +   CE FSGAD
Sbjct: 683 VDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAK-NNCEGFSGAD 742

Query: 439 LLALMNEAAMAALNEKWTSSGDN--------LAIIKMVHFEFGLAKVTPSLSEKE 458
           L  L+ +A   A+ E   SS  +           IK  HFE  L+ V+PS+++++
Sbjct: 743 LAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQ 789

[Close]

BLAST of Lsi01G020790 vs. TAIR10
Match: AT5G08470.1 (AT5G08470.1 peroxisome 1)

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-24
Identity = 123/408 (30.15%), Postives = 176/408 (43.14%), Query Frame = 1


Query: 80   SIENLANVFSKALSSTPSID--IEICFPDESSRLEILSIITNKLSLESNFN-MLKVAKAT 139
            S+++L  +  + LSS+   D  +++  P  S R  IL     K  L+ + + +L +A   
Sbjct: 718  SVQSLEQI-PQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDILLNLAAKC 777

Query: 140  PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHGWKESYSLDGKVPIIITMAD 199
             GY   DL ILVD+AV  A+ R    +       +V E+     + ++   VP  + M D
Sbjct: 778  EGYDAYDLEILVDRAVHAAIGRHLPLESNISKYNLVKEDF----TRAMHDFVP--VAMRD 837

Query: 200  FEEGLEQQKAMVKRGVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTKKKAHGL 259
              +   +   +    V      + A K +   LP  F   +                  L
Sbjct: 838  ITKSASEGGRLGWEDVGGVTDIKNAIKEM-IELPSKFPKIF--------------AKSPL 897

Query: 260  ELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKA 319
             L S +LLYGPPGCGKT I  AAA      FI V+G EL N+ +  S  AVR  F  A A
Sbjct: 898  RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAA 957

Query: 320  CSPCV------DALTAKVGQGG-------------EKEVVSLLRSQLCIAL----EVMDL 379
             +PC+      D++  K G                E + V +L      A     +++D 
Sbjct: 958  AAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDP 1017

Query: 380  AVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLA 439
            A+LR GR    L    PSP ER  IL V  RK  +   +DL  I  M   E FSGADL A
Sbjct: 1018 ALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALM--TEGFSGADLQA 1077

Query: 440  LMNEAAMAA----LNEKWTSSGDNLAIIKMVHFEFGLAKVTPSLSEKE 458
            L+++A +AA    LN +         II     +   +K  PS+SE E
Sbjct: 1078 LLSDAQLAAVHEYLNREDKPETGTTPIITDPLLKSIASKTKPSVSETE 1101

[Close]

BLAST of Lsi01G020790 vs. TAIR10
Match: AT3G09840.1 (AT3G09840.1 cell division cycle 48)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-21
Identity = 77/242 (31.82%), Postives = 110/242 (45.45%), Query Frame = 1


Query: 262 LLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV 321
           +L YGPPGCGKTL+AKA ANE  ANFI V+G EL      ES   VR  F  A+  +PCV
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 322 ------DALTAKVGQGG-----------------EKEVVSLLRSQLCIAL----EVMDLA 381
                 D++  + G G                  E + ++  ++   I      +++D A
Sbjct: 577 LFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSA 636

Query: 382 VLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLAL 441
           +LR GR    +Y+PLP    R  I +   RK PI   VD+ A+ +    + FSGAD+  +
Sbjct: 637 LLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKY--TQGFSGADITEI 696

Query: 442 MNEAAMAAL---------NEKWTSSG---------DNLAIIKMVHFEFGLAKVTPSLSEK 459
              A   A+          EK  S           D ++ IK  HFE  +     S+S+ 
Sbjct: 697 CQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDA 756

[Close]

BLAST of Lsi01G020790 vs. TAIR10
Match: AT5G03340.1 (AT5G03340.1 ATPase, AAA-type, CDC48 protein)

HSP 1 Score: 99.0 bits (245), Expect = 8.2e-21
Identity = 75/242 (30.99%), Postives = 111/242 (45.87%), Query Frame = 1


Query: 262 LLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV 321
           +L YGPPGCGKTL+AKA ANE  ANFI V+G EL      ES   VR  F  A+  +PCV
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 322 ------DALTAKVGQ------GGEKEVVSLLRSQL--------------CIALEVMDLAV 381
                 D++  + G       G    V++ L +++                  +++D A+
Sbjct: 577 LFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSAL 636

Query: 382 LRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFSGADLLALM 441
           LR GR    +Y+PLP    R  I +   RK P+   VD+ A+ +    + FSGAD+  + 
Sbjct: 637 LRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKY--TQGFSGADITEIC 696

Query: 442 NEAAMAAL---------NEKWTSSG----------DNLAIIKMVHFEFGLAKVTPSLSEK 459
             A   A+         NE+  S            D ++ I+  HFE  +     S+S+ 
Sbjct: 697 QRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDA 756

[Close]

BLAST of Lsi01G020790 vs. TAIR10
Match: AT1G03000.1 (AT1G03000.1 peroxin 6)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-20
Identity = 79/247 (31.98%), Postives = 119/247 (48.18%), Query Frame = 1


Query: 255 GLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAFFRCA 314
           GL   S +LLYGPPG GKTL+AKA A E   NF+ V+G EL N  + ES   VR  F  A
Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746

Query: 315 KACSPCV------DALTAKVGQGGEK-EVVSLLRSQLCIAL------------------- 374
           ++  PCV      D+L    G  G+   V+  + SQ+   +                   
Sbjct: 747 RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRP 806

Query: 375 EVMDLAVLRSGRFGHRLYVPL-PSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENFS 434
           +++D A+LR GRF   LYV +    S R  +L+   RK  +   V L ++ + +    F+
Sbjct: 807 DLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAK-KCPSTFT 866

Query: 435 GADLLALMNEAAMAALNEK--WTSSGD--------NLAIIKMVHFEFGLAKVTPSLSEKE 465
           GAD+ AL  +A   A   K   + SGD        +  +++ V F   + +++PSLS  E
Sbjct: 867 GADMYALCADAWFQAAKRKVSKSDSGDMPTEEDDPDSVVVEYVDFIKAMDQLSPSLSITE 926

[Close]

BLAST of Lsi01G020790 vs. NCBI nr
Match: gi|659093233|ref|XP_008447436.1| (PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 7.1e-83
Identity = 201/438 (45.89%), Postives = 254/438 (57.99%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++R EIL+++T+ L LE +F++LK+A+AT
Sbjct: 387 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLEGSFDLLKIARAT 446

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWKESYSLDGKVPIIIT 198
            G+VG DLT L +KA ++AM+RI D+++ +L +   D EH    W++ +  +    + IT
Sbjct: 447 AGFVGADLTALANKAGNLAMKRIIDQRKCELSTDFADNEHIEDWWRQPWLPEEMEKLAIT 506

Query: 199 MADFEE--------------------------GLEQQKAMVKRGVVKCIKYREACKPINF 258
           M DFEE                          GLEQ +A   R VV+ +KY E       
Sbjct: 507 MTDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFDRYVVRRVKYPED------ 566

Query: 259 FLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANF 318
                    Y G               G++L +  LLYGPPGCGKTLIAKA ANEAGANF
Sbjct: 567 ---------YEGF--------------GVDLETGFLLYGPPGCGKTLIAKAVANEAGANF 626

Query: 319 IHVEGHELTNRNVVESLDAVRAFFRCAKACSPC------VDALTAKVGQGGEKEVVSLLR 378
           IH++G EL N+ V ES  AVR  F  A+ACSPC      VDALT K G+ G   VV  L 
Sbjct: 627 IHIKGPELLNKYVGESELAVRTLFSRARACSPCILFFDEVDALTTKRGKEGGW-VVERLL 686

Query: 379 SQLCIAL------------------EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHG 438
           +QL I L                  EV+D A+LR GRFG  LYVPLP+P+ERGL+L+  G
Sbjct: 687 NQLLIELDGAEQRRGVFVIGATNRPEVIDPAILRPGRFGKLLYVPLPNPTERGLVLKALG 746

Query: 439 RKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTSSGDNL----AIIKM 458
           RK+PID SVDL+AIGQMEACENFSGADL ALMNEAAMAAL EK TS   N+      IKM
Sbjct: 747 RKKPIDVSVDLLAIGQMEACENFSGADLAALMNEAAMAALEEKLTSDNSNIESASCTIKM 794

[Close]

BLAST of Lsi01G020790 vs. NCBI nr
Match: gi|659116138|ref|XP_008457923.1| (PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 2.7e-82
Identity = 201/438 (45.89%), Postives = 252/438 (57.53%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++R EIL+++T+ L LE +F++LK+A+AT
Sbjct: 395 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLEGSFDLLKIARAT 454

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWKESYSLDGKVPIIIT 198
           PG+VG DLT L +KA ++AM+RI D+++ +L +   D EH    W++ +  +    + IT
Sbjct: 455 PGFVGADLTALANKAGNLAMKRIIDQRKCELSTDFADNEHIEDWWRQPWLPEEMEKLAIT 514

Query: 199 MADFEE--------------------------GLEQQKAMVKRGVVKCIKYREACKPINF 258
           M DFEE                          GLEQ +A  +R VV+ +KY E       
Sbjct: 515 MTDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFERYVVRRVKYPED------ 574

Query: 259 FLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANF 318
                    Y G               G++L +  LLYGPPGCGKTLIAKA ANEAGANF
Sbjct: 575 ---------YEGF--------------GVDLETGFLLYGPPGCGKTLIAKAVANEAGANF 634

Query: 319 IHVEGHELTNRNVVESLDAVRAFFRCAKACSPC------VDALTAKVGQGGEKEVVSLLR 378
           IH++G EL N+ V ES  AVR  F  A+ CSPC      VDALT K G+ G   VV  L 
Sbjct: 635 IHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLL 694

Query: 379 SQLCIAL------------------EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHG 438
           +QL I L                  EV+D A+LR GRFG  LYVPLP P+ERGL+L+  G
Sbjct: 695 NQLLIELDGAEQRRGVFVIGATNRPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALG 754

Query: 439 RKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTSSGDNL----AIIKM 458
           RK+PID SVDL AIGQMEACENFSGADL ALMNEAAMAAL EK T    N+      IKM
Sbjct: 755 RKKPIDVSVDLPAIGQMEACENFSGADLAALMNEAAMAALEEKLTLDNSNIESASCTIKM 802

[Close]

BLAST of Lsi01G020790 vs. NCBI nr
Match: gi|449457301|ref|XP_004146387.1| (PREDICTED: cell division control protein 48 homolog C [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 200/438 (45.66%), Postives = 251/438 (57.31%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++R EIL+++T+ L LE +F++LK+A+AT
Sbjct: 395 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLEGSFDLLKIARAT 454

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWKESYSLDGKVPIIIT 198
           PG+VG DLT L +KA ++AM+RI D+++ +L +     EH    W++ +  +    + IT
Sbjct: 455 PGFVGADLTALANKAGNLAMKRIIDQRKCELSTDCAANEHIEDWWRQPWLPEEMEKLAIT 514

Query: 199 MADFEE--------------------------GLEQQKAMVKRGVVKCIKYREACKPINF 258
           M DFEE                          GLEQ +A   R VV+ +KY E       
Sbjct: 515 MIDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFDRYVVRRVKYPED------ 574

Query: 259 FLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANF 318
                    Y G               G++L +  LLYGPPGCGKTLIAKA ANEAGANF
Sbjct: 575 ---------YEGF--------------GVDLATGFLLYGPPGCGKTLIAKAVANEAGANF 634

Query: 319 IHVEGHELTNRNVVESLDAVRAFFRCAKACSPC------VDALTAKVGQGGEKEVVSLLR 378
           IH++G EL N+ V ES  AVR  F  A+ CSPC      VDALT K G+ G   VV  L 
Sbjct: 635 IHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLL 694

Query: 379 SQLCIAL------------------EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHG 438
           +QL I L                  EV+D A+LR GRFG  LYVPLP P+ERGL+L+  G
Sbjct: 695 NQLLIELDGAEQRRGVFVIGATNRPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALG 754

Query: 439 RKRPIDTSVDLIAIGQMEACENFSGADLLALMNEAAMAALNEKWTSSGDNL----AIIKM 458
           RK+PID SVDL+AIGQMEACENFSGADL ALMNEAAMAAL EK T    N+      IKM
Sbjct: 755 RKKPIDVSVDLLAIGQMEACENFSGADLAALMNEAAMAALEEKLTLDNSNIESASCTIKM 802

[Close]

BLAST of Lsi01G020790 vs. NCBI nr
Match: gi|659116140|ref|XP_008457924.1| (PREDICTED: cell division control protein 48 homolog C-like isoform X2 [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 5.7e-80
Identity = 189/417 (45.32%), Postives = 246/417 (58.99%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE++R EIL+++T+ L LE +F++LK+A+AT
Sbjct: 395 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLEGSFDLLKIARAT 454

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEH---GWKESYSLDGKVPIIIT 198
           PG+VG DLT L +KA ++AM+RI D+++ +L +   D EH    W++ +  +    + IT
Sbjct: 455 PGFVGADLTALANKAGNLAMKRIIDQRKCELSTDFADNEHIEDWWRQPWLPEEMEKLAIT 514

Query: 199 MADFEE--------------------------GLEQQKAMVKRGVVKCIKYREACKPINF 258
           M DFEE                          GLEQ +A  +R VV+ +KY E       
Sbjct: 515 MTDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFERYVVRRVKYPED------ 574

Query: 259 FLPYFFHTYYNGLFAYMATSCTKKKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANF 318
                    Y G               G++L +  LLYGPPGCGKTLIAKA ANEAGANF
Sbjct: 575 ---------YEGF--------------GVDLETGFLLYGPPGCGKTLIAKAVANEAGANF 634

Query: 319 IHVEGHELTNRNVVESLDAVRAFFRCAKACSPCV---DALTAKVGQGGEKEVVSLLRSQL 378
           IH++G EL N+ V ES  AVR  F  A+ CSPC+   D L  ++    ++  V ++ +  
Sbjct: 635 IHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDELLIELDGAEQRRGVFVIGATN 694

Query: 379 CIALEVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACE 438
               EV+D A+LR GRFG  LYVPLP P+ERGL+L+  GRK+PID SVDL AIGQMEACE
Sbjct: 695 --RPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALGRKKPIDVSVDLPAIGQMEACE 754

Query: 439 NFSGADLLALMNEAAMAALNEKWTSSGDNL----AIIKMVHFEFGLAKVTPSLSEKE 458
           NFSGADL ALMNEAAMAAL EK T    N+      IKMVHFE GL K++PS+SEK+
Sbjct: 755 NFSGADLAALMNEAAMAALEEKLTLDNSNIESASCTIKMVHFERGLTKISPSVSEKQ 780

[Close]

BLAST of Lsi01G020790 vs. NCBI nr
Match: gi|590604844|ref|XP_007020346.1| (Cell division control protein 48 C isoform 2 [Theobroma cacao])

HSP 1 Score: 302.0 bits (772), Expect = 1.8e-78
Identity = 190/413 (46.00%), Postives = 243/413 (58.84%), Query Frame = 1


Query: 79  ISIENLANVFSKALSSTPSIDIEICF--PDESSRLEILSIITNKLSLESNFNMLKVAKAT 138
           I   N  +    AL      D EI    PDE +R EILS++T  L LE +F++LK+A+AT
Sbjct: 378 IGATNRPDAVDPALRRPGRFDREIVLGVPDEIARHEILSVLTRNLRLEGSFDLLKIARAT 437

Query: 139 PGYVGLDLTILVDKAVDVAMRRIFDKKERDLPSLVVDEEHG---WKESYSLDGKVPIIIT 198
           PG+VG DL  L +KA ++AM+RI D+++ +     +DEE     W++ +  +    + IT
Sbjct: 438 PGFVGADLAALANKAGNLAMKRIIDQRKHEFSRESIDEEQADEWWRQPWLPEEMEKLTIT 497

Query: 199 MADFEEGLEQQKAMVKR---GVVKCIKYREACKPINFFLPYFFHTYYNGLFAYMATSCTK 258
           MADFEE  +  +   +R     +  +K+ +       FL   F  Y      +       
Sbjct: 498 MADFEEAAKMVQPSSRREGFSTIPNVKWEDVGGLE--FLRQEFDRYIVRRIKFPEDYAE- 557

Query: 259 KKAHGLELWSVLLLYGPPGCGKTLIAKAAANEAGANFIHVEGHELTNRNVVESLDAVRAF 318
               G++L +  LLYGPPGCGKTLIAKA ANEAGANFIH++G EL N+ V ES  AVR  
Sbjct: 558 ---FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTL 617

Query: 319 FRCAKACSPC------VDALTAKVGQGGEKEVVSLLRSQLCIAL---------------- 378
           F  A+ CSPC      VDALT K G+ G   V  LL  QL I L                
Sbjct: 618 FSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQQLLIELDGADQRRGVYVIGATN 677

Query: 379 --EVMDLAVLRSGRFGHRLYVPLPSPSERGLILQVHGRKRPIDTSVDLIAIGQMEACENF 438
             EVMD AVLR GRFG  LYVPLP+P ERGLIL+   RK+PID SVDL A+G+MEACEN 
Sbjct: 678 RPEVMDRAVLRPGRFGKLLYVPLPNPDERGLILKALARKKPIDASVDLSALGRMEACENL 737

Query: 439 SGADLLALMNEAAMAALNEKWTSSG--DNLAIIKMVHFEFGLAKVTPSLSEKE 458
           SGADL ALMNEAAMAAL EK TS+G  +    IK  HFE  L+K++PS+S+K+
Sbjct: 738 SGADLSALMNEAAMAALEEKLTSTGISETSLTIKTFHFERALSKISPSVSDKQ 784

The following BLAST results are available for this feature:

BLAST of Lsi01G020790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CD48C_ARATH	9.7e-56	36.63	Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=...	[more]
Y1297_ARCFU	1.6e-37	30.92	Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain...	[more]
NVL_DICDI	1.9e-35	42.31	Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 ...	[more]
TERA_PIG	2.4e-30	29.80	Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5	[more]
TERA_HUMAN	3.1e-30	29.80	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	[more]

BLAST of Lsi01G020790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3U4_CUCSA	9.4e-82	45.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506870 PE=4 SV=1	[more]
A0A061F4A3_THECC	1.3e-78	46.00	Cell division control protein 48 C isoform 2 OS=Theobroma cacao GN=TCM_030531 PE...	[more]
A0A0D2SEH5_GOSRA	2.4e-77	45.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G148700 PE=4 SV=1	[more]
A0A061F3G0_THECC	2.4e-77	46.00	Cell division control protein 48 C isoform 1 OS=Theobroma cacao GN=TCM_030531 PE...	[more]
F6HG51_VITVI	9.1e-77	45.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02600 PE=4 SV=...	[more]

BLAST of Lsi01G020790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01610.1	5.5e-57	36.63	cell division cycle 48C	[more]
AT5G08470.1	3.6e-24	30.15	peroxisome 1	[more]
AT3G09840.1	4.8e-21	31.82	cell division cycle 48	[more]
AT5G03340.1	8.2e-21	30.99	ATPase, AAA-type, CDC48 protein	[more]
AT1G03000.1	2.4e-20	31.98	peroxin 6	[more]

BLAST of Lsi01G020790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093233\|ref\|XP_008447436.1\|	7.1e-83	45.89	PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Cucumis m...	[more]
gi\|659116138\|ref\|XP_008457923.1\|	2.7e-82	45.89	PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Cucumis m...	[more]
gi\|449457301\|ref\|XP_004146387.1\|	1.3e-81	45.66	PREDICTED: cell division control protein 48 homolog C [Cucumis sativus]	[more]
gi\|659116140\|ref\|XP_008457924.1\|	5.7e-80	45.32	PREDICTED: cell division control protein 48 homolog C-like isoform X2 [Cucumis m...	[more]
gi\|590604844\|ref\|XP_007020346.1\|	1.8e-78	46.00	Cell division control protein 48 C isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR003959	ATPase_AAA_core
IPR003593	AAA+_ATPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0035194	posttranscriptional gene silencing by RNA
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0070646	protein modification by small protein removal
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0051301	cell division
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020790.1	Lsi01G020790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 258..371 score: 0.0047coord: 41..170 score: 2.
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 262..321 score: 1.9E-14coord: 45..97 score: 9.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 8..98 score: 9.8E-17coord: 247..386 score: 3.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..212 score: 2.0E-23coord: 255..458 score: 2.78
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 105..205 score: 5.9E-15coord: 387..457 score: 1.0
None	No IPR available	PANTHER	PTHR23077	AAA-FAMILY ATPASE	coord: 9..232 score: 5.8E-89coord: 262..459 score: 5.8
None	No IPR available	PANTHER	PTHR23077:SF55	NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE	coord: 262..459 score: 5.8E-89coord: 9..232 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G020790	Cla97C04G069930	Watermelon (97103) v2	lsiwmbB137
Lsi01G020790	Cp4.1LG10g12410	Cucurbita pepo (Zucchini)	cpelsiB050
Lsi01G020790	CsGy4G018910	Cucumber (Gy14) v2	cgyblsiB238
Lsi01G020790	CsaV3_4G030490	Cucumber (Chinese Long) v3	cuclsiB274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G020790	Cucumber (Gy14) v1	cgylsiB428
Lsi01G020790	Cucurbita maxima (Rimu)	cmalsiB599
Lsi01G020790	Cucurbita moschata (Rifu)	cmolsiB585
Lsi01G020790	Wild cucumber (PI 183967)	cpilsiB249
Lsi01G020790	Cucumber (Chinese Long) v2	culsiB261
Lsi01G020790	Watermelon (Charleston Gray)	lsiwcgB139
Lsi01G020790	Watermelon (97103) v1	lsiwmB151