Lsi01G020170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G020170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAlcohol dehydrogenase-like protein
Locationchr01 : 27562268 .. 27562471 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

mRNA sequence

ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

Coding sequence (CDS)

ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

Protein sequence

MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIGGVGSR
Homology
[Close]
BLAST of Lsi01G020170 vs. Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=adhB PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.2e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

[Close]
BLAST of Lsi01G020170 vs. Swiss-Prot
Match: ADHB_MYCTO (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=adhB PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.2e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

[Close]
BLAST of Lsi01G020170 vs. Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=adhB PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.2e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

[Close]
BLAST of Lsi01G020170 vs. Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-07
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 5   GGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGI-GG 64
           GG AEY +   H V  LP+ L + + A +G   FTAY A+ H+A V+PG+SV + G  GG
Sbjct: 101 GGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGG 160

Query: 65  VG 66
           VG
Sbjct: 161 VG 162

[Close]
BLAST of Lsi01G020170 vs. Swiss-Prot
Match: QOR_PONAB (Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 5   GGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGI-GG 64
           GG AEY +   H V  LP+ L + + A +G   FTAY A+ H+A V+ G+SV + G  GG
Sbjct: 101 GGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSAHVKAGESVLVHGASGG 160

Query: 65  VG 66
           VG
Sbjct: 161 VG 162

[Close]
BLAST of Lsi01G020170 vs. TrEMBL
Match: A0A0A0L305_CUCSA (Oxidoreductase OS=Cucumis sativus GN=Csa_4G337920 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 249

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 250 IGGVGSR 256

[Close]
BLAST of Lsi01G020170 vs. TrEMBL
Match: B9IP45_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00830g PE=4 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-26
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCV PAHG++ILP SLPYTESAILGCAVFTAYGAMAHAA+VRPGDSVA+IG
Sbjct: 211 MYSMGGLAEYCVVPAHGLTILPNSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIG 270

Query: 61  IGGVGS 67
           +GGVGS
Sbjct: 271 VGGVGS 276

[Close]
BLAST of Lsi01G020170 vs. TrEMBL
Match: A0A0D3BFD4_BRAOL (Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-26
Identity = 58/66 (87.88%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPYTESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 239 MYSMGGMAEYCVTPAHGLAPLPESLPYTESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 298

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 299 IGGVGS 304

[Close]
BLAST of Lsi01G020170 vs. TrEMBL
Match: A0A022PXM2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006480mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-26
Identity = 60/66 (90.91%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCV PA+G++ILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGD+VA+IG
Sbjct: 209 MYSMGGLAEYCVVPANGLTILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDAVAVIG 268

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 269 IGGVGS 274

[Close]
BLAST of Lsi01G020170 vs. TrEMBL
Match: A0A078HW01_BRANA (BnaA06g22770D protein OS=Brassica napus GN=BnaA06g22770D PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-26
Identity = 58/66 (87.88%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPYTESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 202 MYSMGGMAEYCVTPAHGLAPLPESLPYTESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 261

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 262 IGGVGS 267

[Close]
BLAST of Lsi01G020170 vs. TAIR10
Match: AT5G63620.1 (AT5G63620.1 GroES-like zinc-binding alcohol dehydrogenase family protein)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-29
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPY+ESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 194 MYSMGGMAEYCVTPAHGLAPLPESLPYSESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 253

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 254 IGGVGS 259

[Close]
BLAST of Lsi01G020170 vs. NCBI nr
Match: gi|700199328|gb|KGN54486.1| (Oxidoreductase [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 249

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 250 IGGVGSR 256

[Close]
BLAST of Lsi01G020170 vs. NCBI nr
Match: gi|449449817|ref|XP_004142661.1| (PREDICTED: alcohol dehydrogenase 1B [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 249

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 250 IGGVGS 255

[Close]
BLAST of Lsi01G020170 vs. NCBI nr
Match: gi|659069355|ref|XP_008449387.1| (PREDICTED: alcohol dehydrogenase 1B [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV PGDS+AIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVCPGDSIAIIG 249

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 250 IGGVGS 255

[Close]
BLAST of Lsi01G020170 vs. NCBI nr
Match: gi|922470662|ref|XP_013634892.1| (PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase 1B-like [Brassica oleracea var. oleracea])

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-26
Identity = 58/67 (86.57%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPY+ESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 188 MYSMGGMAEYCVTPAHGLAPLPESLPYSESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 247

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 248 IGGVGSR 254

[Close]
BLAST of Lsi01G020170 vs. NCBI nr
Match: gi|743914657|ref|XP_011001261.1| (PREDICTED: alcohol dehydrogenase 1B isoform X2 [Populus euphratica])

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-26
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCV PAHG++ILP SLPYTESAILGCAVFTAYGAMAHAA+VRPGDSVA+IG
Sbjct: 211 MYSMGGLAEYCVVPAHGLTILPNSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIG 270

Query: 61  IGGVGS 67
           +GGVGS
Sbjct: 271 VGGVGS 276

The following BLAST results are available for this feature:
BLAST of Lsi01G020170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ADHB_MYCBO9.2e-0841.54Alcohol dehydrogenase B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)... [more]
ADHB_MYCTO9.2e-0841.54Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh... [more]
ADHB_MYCTU9.2e-0841.54Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv... [more]
QOR_BOVIN4.6e-0746.77Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]
QOR_PONAB2.3e-0645.16Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1[more]
BLAST of Lsi01G020170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L305_CUCSA2.3e-29100.00Oxidoreductase OS=Cucumis sativus GN=Csa_4G337920 PE=4 SV=1[more]
B9IP45_POPTR2.3e-2689.39Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00830g PE=4 SV=2[more]
A0A0D3BFD4_BRAOL3.1e-2687.88Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A022PXM2_ERYGU3.1e-2690.91Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006480mg PE=4 SV=1[more]
A0A078HW01_BRANA3.1e-2687.88BnaA06g22770D protein OS=Brassica napus GN=BnaA06g22770D PE=4 SV=1[more]
BLAST of Lsi01G020170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63620.14.5e-2986.36 GroES-like zinc-binding alcohol dehydrogenase family protein[more]
BLAST of Lsi01G020170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199328|gb|KGN54486.1|3.2e-29100.00Oxidoreductase [Cucumis sativus][more]
gi|449449817|ref|XP_004142661.1|1.2e-28100.00PREDICTED: alcohol dehydrogenase 1B [Cucumis sativus][more]
gi|659069355|ref|XP_008449387.1|1.4e-2796.97PREDICTED: alcohol dehydrogenase 1B [Cucumis melo][more]
gi|922470662|ref|XP_013634892.1|3.4e-2686.57PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase 1B-like [Brassica oleracea... [more]
gi|743914657|ref|XP_011001261.1|3.4e-2689.39PREDICTED: alcohol dehydrogenase 1B isoform X2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like_sf
IPR002085Alcohol dehydrogenase superfamily, zinc-type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G020170.1Lsi01G020170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002085Alcohol dehydrogenase superfamily, zinc-typePANTHERPTHR11695ALCOHOL DEHYDROGENASE RELATEDcoord: 1..66
score: 4.1
IPR011032GroES-likeGENE3DG3DSA:3.90.180.10coord: 3..66
score: 4.0
IPR011032GroES-likeunknownSSF50129GroES-likecoord: 3..54
score: 4.55
NoneNo IPR availablePANTHERPTHR11695:SF555GROES-LIKE ZINC-BINDING ALCOHOL DEHYDROGENASE FAMILY PROTEINcoord: 1..66
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G020170Cucurbita maxima (Rimu)cmalsiB789
Lsi01G020170Cucurbita moschata (Rifu)cmolsiB589
Lsi01G020170Cucurbita moschata (Rifu)cmolsiB775
Lsi01G020170Cucurbita pepo (Zucchini)cpelsiB399
Lsi01G020170Wild cucumber (PI 183967)cpilsiB265
Lsi01G020170Cucumber (Chinese Long) v2culsiB266
Lsi01G020170Melon (DHL92) v3.5.1lsimeB153
Lsi01G020170Watermelon (Charleston Gray)lsiwcgB138
Lsi01G020170Watermelon (97103) v1lsiwmB149
Lsi01G020170Cucumber (Gy14) v2cgyblsiB249
Lsi01G020170Melon (DHL92) v3.6.1lsimedB160
Lsi01G020170Silver-seed gourdcarlsiB430
Lsi01G020170Watermelon (97103) v2lsiwmbB136
Lsi01G020170Wax gourdlsiwgoB173