Lsi01G019840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CBS domain-containing protein
Location	chr01 : 26389127 .. 26392542 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGATATTAGAATACAAAGAGAAGACTATTTTATTTTGAACATATTCATGAGGAGCTTTCTTTGGAAGGGGAGGAGGGGGTTGGGTTAAGGTAATGGGTCTCATCTCTTGAATTGGAAGTGGTTTAGAATATTCTGTTGGCTTTTCTAATTTTTGAAATTAATTAATCTGATTTTGTTAAACTCCGAAGTTCTGAAGCATTGCTGATGCTTTGCAAATTTGAACTGTTTCATGTAACCTTTGTTATCTTTAGTAATTATGATGCTCTGCGGTTATCTGATTTTTTTTTTTTTTTTTTTAAACCATTGTGAGAATTTTGCAGTGAAATGTCTGCATTCATGGCTTCTGAAGGGGCTCTATACTATCCATCTCTAGGTCTTGGAAACTCATTTGCTTTTAAATTTGAGGATCTGAAGGGTCGGGTACATCGCGTAAATTGTGGTGAGTGTTTAGGGTTTTTTTAGAACTATGATTTTGAAGAACTTTATTACAATGTGTATGCATATATGTTTGTGTGTGTGTGTGATGTATTGTTAACAAGTAAACCAAGTGTGCTGATGGTTTAAGGCGTTTTCTTTGAGGAACCATTTCATTGAGAAAATGAAATATATAAAGAGAGGAAAGCCTCGAAACCAAGTAGTGTAAACTTCCTAGTTGGAAATAGTGAAAAAGAGAAATATTTTTTTTTCAAGAAAACCCGCTTGACCCTACAACATTTGGATATCAAGGAAACTCATAGGATATTAAATTCCAAGTAGGTGGCCTCCATGGATCCTATTCCCTCTAAGTCCTATACTAAATCCATGACCTTTTTTTAACCACTAGGTCAATCCATGATATGATGGTTTGCAAATATAATAACTTCTGCAGTAAACACCAAATTGAGGCAATAAAAACTAAATTTTTTGCTTCACTGAGAATAATTATTTTGTTATGTTCCAACCATACTTCCACGTCCGACACTAGAGCCTGACCTTGTGTCAAAGAATGCTAATGCTGCTTTTGACTGAAATTGATTCAACAAAGATTCCTGTATAAGTCCTGAAAATCTTCAGGAAAAGGGAGCTAGAGACCACAAACCTCTATTAACTACCACCAAATAGTATTAACTACCACCAATTAGTAGTAGCTTTCCTCAAAGTATATTTCTCTGGTTGTGTTTGTATTTCATCTTGAAGATTGTTGTCATACTCTTTTATTAGGAGTGTTTTGAACACAGTTCGTAATTATCCCTTTTTAGATTCCTTGAACACCCTCCTGTTCTCCATTCGGTAAGAGATAACAGGGTAATTAAACTCTTCAATCTGTCCAGAGAACCATGTTGAGAGGAGCTGTTTCTATTTTTCTCCTTCTGTTGCATTTAGGCCTATTATCCCTGCCGTCAAAAGCTAAACCAAAGCCTAGAGGATCTCGTTTTAATCACACTTTTCCTAGTCGGGTAACGCCAACCTCCCATTAGAGAATGGTCAACCGACGTTATGAGGACCTTCAACGAAGGGTGATCACTACATTTCTTGTTTCCATTGGCAAGAGTGTGGAGGCATTAACCCTGGCTGATTTGGCTTATGCCGTTAAACAAGAAGGGGTAACAAATATACTGGTAAGAAAATATATGGTGATCACTACAGATGGTGGATTTGCGAAGATCGTTTTTAATCTTCTCCTAAAGAAGCAGAAATTAGAGGGTAGATTCTATCCAGTGGAACTATTTATTAATAATTGTTTTCTTAGGCACTGAGACCCTAGATGAGTTGGTATCTGTTGTGATGCAAAGGGTTGGTGCTACTAATGGTGCTAGTCGTCCTCTGCTTTTGGTATGTTTCTTGCTACTTTTTCTGACTGCATTTTTTTCGAGTTTATTGTGTAAGTCAAGGGTTTTGTTTCTTTTACAAGTATGAAGATAATGAAGGTGATAAAGTAGTTCTTGCTACTGATGGCGATCTCTCCGGTGCTGTAAACCATGCCAAGTCCACAGGAAAAAAGGTAGTTAATTTAGTAAAAGTATTCAACTTTCATGTTCCTTTTTTAGTATTATTCTTTTGTGACTTCATCTTTTTCTTGTTATTCTTAAACTTTATTGGTTCTCCAAATGTTGGTTGCTGTTTTATTTGTGCAACGTTACCGGTATGTCAAATTGTTCATAATATCAAAGGACATTTTTTAATACGAGACACAATTGCACCAATAAATCAAATGTACTAGAAGAGGAAAGATACCCTTAACCAAAGTCAAGGAGTTAAATAGAAGAGTATTTAGTTTTAGATAATGTACACCAAGAGGAGGAAACGAAGATTAACCTTCTAATATATTTTGAATTTCTTAAAAATCATCAAACATATCTATTTTTCCTCAGTCCAAAATTTCCAAAAGAATAGGCAAGGATTGCTTAAGAATCTCCCAGTAGCATGTATAGTTTAATGACAGCTATAATTTCCAGTCCTGTACTTCTCTGTTGCTATGTTGGTTTAAGTTTTGCATATCATTATTATTTACTTAGTTTGCTGACTTTATGTATTTTTGCATATTTTGGCAAATTTTAGTAAATTTCAGAACCCCTTTATGTTCATGCTGAAATCTAAGGAATTTTTTATATCTAGCAGACTGCTGAATTTAATATTTGATACTGTAATCCTTTTTCTTTAAAAGATTAAATTACCTTGTCATGAATTCTATTCTCAAGTCCATGGATTTCCACAGGCTCTGTATTGCTCTTCTGGATCGTAATTTAGTTGATGCCATATCTTGTGTACCAATCTAAAATTGTTATCTGGGCAACATCTTCCTTTTCAAGTATAATATTTTAAATTTGTATACAAATTGAATGTGAGCAAACTGCGCTCTCCAATTTCTTATTTTATTCTTGGGGAAACACTTGCAGGTTTTAAGGTTGCATTTGGATTTTCCCAAGTCGATCCAGCAAAGAGAGATTCAAACTGATGCAACATTGGACCAGAAACGTGGATCGTTGCATTTATATTCGGGTGCATTTGCTGCTGCCATTGTTATAACAAGCATTGGTGTATTGATCTATTTGAAGCGCTCTAAGATGTAAAGTTAAAAGACAAAATTATTGAAACAGCAAACGCATGCTCCTCATAAATTTCGGCAGTTGAGGACTAAATGGTAATTGAGCTCTAATTTTTGTGTAATTTTAAAGTCAACTTAGACATTCTTGTAAATAATGGAAAAGATGGACATAATTGAAATATAGGCCATTTATTAAGGCCTTTATGTATTTTATCCCAATACATTACAATACCCAAGTTCTCAAAGAAACTGAGATATGTTAAAAGGGAAAGAGTTGCAACACCAGAGGGAAATATGGTTAGTCTGATGTCTGGATCAGATAAAGCCTTCATTTTTTGTGAACTTGAGAATTGGTTAAGGTTCTTTCTGTCAGAAAAAACATCATTGAGG

mRNA sequence

GGGATATTAGAATACAAAGAGAAGACTATTTTATTTTGAACATATTCATGAGGAGCTTTCTTTGGAAGGGGAGGAGGGGGTTGGGTTAAGTGAAATGTCTGCATTCATGGCTTCTGAAGGGGCTCTATACTATCCATCTCTAGGTCTTGGAAACTCATTTGCTTTTAAATTTGAGGATCTGAAGGGTCGGGTACATCGCGTAAATTGTGGCACTGAGACCCTAGATGAGTTGGTATCTGTTGTGATGCAAAGGGTTGGTGCTACTAATGGTGCTAGTCGTCCTCTGCTTTTGTATGAAGATAATGAAGGTGATAAAGTAGTTCTTGCTACTGATGGCGATCTCTCCGGTGCTGTAAACCATGCCAAGTCCACAGGAAAAAAGGTTTTAAGGTTGCATTTGGATTTTCCCAAGTCGATCCAGCAAAGAGAGATTCAAACTGATGCAACATTGGACCAGAAACGTGGATCGTTGCATTTATATTCGGGTGCATTTGCTGCTGCCATTGTTATAACAAGCATTGGTGTATTGATCTATTTGAAGCGCTCTAAGATGTAAAGTTAAAAGACAAAATTATTGAAACAGCAAACGCATGCTCCTCATAAATTTCGGCAGTTGAGGACTAAATGGTAATTGAGCTCTAATTTTTGTGTAATTTTAAAGTCAACTTAGACATTCTTGTAAATAATGGAAAAGATGGACATAATTGAAATATAGGCCATTTATTAAGGCCTTTATGTATTTTATCCCAATACATTACAATACCCAAGTTCTCAAAGAAACTGAGATATGTTAAAAGGGAAAGAGTTGCAACACCAGAGGGAAATATGGTTAGTCTGATGTCTGGATCAGATAAAGCCTTCATTTTTTGTGAACTTGAGAATTGGTTAAGGTTCTTTCTGTCAGAAAAAACATCATTGAGG

Coding sequence (CDS)

ATGTCTGCATTCATGGCTTCTGAAGGGGCTCTATACTATCCATCTCTAGGTCTTGGAAACTCATTTGCTTTTAAATTTGAGGATCTGAAGGGTCGGGTACATCGCGTAAATTGTGGCACTGAGACCCTAGATGAGTTGGTATCTGTTGTGATGCAAAGGGTTGGTGCTACTAATGGTGCTAGTCGTCCTCTGCTTTTGTATGAAGATAATGAAGGTGATAAAGTAGTTCTTGCTACTGATGGCGATCTCTCCGGTGCTGTAAACCATGCCAAGTCCACAGGAAAAAAGGTTTTAAGGTTGCATTTGGATTTTCCCAAGTCGATCCAGCAAAGAGAGATTCAAACTGATGCAACATTGGACCAGAAACGTGGATCGTTGCATTTATATTCGGGTGCATTTGCTGCTGCCATTGTTATAACAAGCATTGGTGTATTGATCTATTTGAAGCGCTCTAAGATGTAA

Protein sequence

MSAFMASEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM

Homology

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BLAST of Lsi01G019840 vs. Swiss-Prot
Match: Y3295_ARATH (CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-35
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 13  YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNG--ASRPLLLYEDN 72
           YPSLGLGNSF+FKFEDLKGRVHR   G E L+EL+ +VMQR+G+ N     RP ++YED+
Sbjct: 408 YPSLGLGNSFSFKFEDLKGRVHRFTSGAENLEELMGIVMQRIGSDNNNVEQRPQIIYEDD 467

Query: 73  EGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLDQKRGSLHLYS 132
           EGDKV++ +D DL GAV  A+STG+KVLRLHLDF +S   R + ++ T  +K  S    S
Sbjct: 468 EGDKVLITSDSDLVGAVTLARSTGQKVLRLHLDFTES--TRSLSSETTQLKKGDSRDRGS 527

Query: 133 G--------AFAAAIVITSIGVLIYLKRSK 153
           G            A+V+TSI +++YLKRSK
Sbjct: 528 GWVSWRGGVVVTGAVVLTSIAIVVYLKRSK 555

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BLAST of Lsi01G019840 vs. Swiss-Prot
Match: Y2650_ARATH (CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 1   MSAFMA-SEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNG 60
           MSA +  SEG    PS GL +SFAFKFED KGRV R N   E+ +EL+SVVMQR  A +G
Sbjct: 387 MSAMLINSEGKQSCPSQGLVSSFAFKFEDRKGRVQRFNSTGESFEELMSVVMQRCEADSG 446

Query: 61  ASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATL 120
                ++Y+D+EGDKV+++ D DL  AV  A+S G+KVLRLHLDF ++I   E   D + 
Sbjct: 447 LQ---IMYQDDEGDKVLISRDSDLVAAVTFARSLGQKVLRLHLDFTETIAPLETIADLS- 506

Query: 121 DQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSK 153
           +   G +   +G  A AIV+TSIG+ +YLKRSK
Sbjct: 507 EGNGGCVWWQTGVLAGAIVLTSIGLFVYLKRSK 535

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BLAST of Lsi01G019840 vs. Swiss-Prot
Match: Y5053_ARATH (CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGAT-NGASRPLLLYEDNEGD 74
           S    N+FAFK +D KGR+HR  C T++L  L++ ++QR+G      + P ++YED + D
Sbjct: 407 SFSYPNTFAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDND 466

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE--IQTDATLDQKRGSLHLYSG 134
           KVVLA+D DL  AV HAKS G K L+LHLD+ +    R      D   DQ       Y  
Sbjct: 467 KVVLASDNDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSNSWAAAYKT 526

Query: 135 AFAAAIVITSIGVLIYLKRS 152
             A A +   +GVL+YLKR+
Sbjct: 527 VAAGAALAAGLGVLVYLKRN 546

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BLAST of Lsi01G019840 vs. Swiss-Prot
Match: Y5064_ARATH (CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGAT-NGASRPLLLYEDNEGD 74
           S    N+FAFK +D KGR+HR  C T++L  L++ ++QR+G      + P ++YED + D
Sbjct: 407 SFSYPNTFAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDND 466

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE--IQTDATLDQKRGSLHLYSG 134
           KVVLA+D DL  AV HAKS G K L+LHLD+ +    R      D   DQ       Y  
Sbjct: 467 KVVLASDNDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSNSWAAAYKT 526

Query: 135 AFAAAIVITSIGVLIYLKRS 152
             A A +   +GVL+YLKR+
Sbjct: 527 VAAGAALAAGLGVLVYLKRN 546

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BLAST of Lsi01G019840 vs. Swiss-Prot
Match: Y5349_ARATH (CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGASR-PLLLYEDNEGD 74
           S    N+F+FK ED K R HR    T +L E+++ ++QRVG        P +LYED + D
Sbjct: 398 SFPFANTFSFKIEDKKHRKHRFISDTRSLTEVITAIIQRVGDDIDPDNFPQILYEDEDHD 457

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE-------------IQTDATLD 134
           KV+LA+D DL  A+ HAKS G K LRLHLD  +  + R              ++TDA   
Sbjct: 458 KVLLASDSDLQAAIEHAKSIGWKSLRLHLDDSREGKGRRRRRASGSAESMEYVETDAW-- 517

Query: 135 QKRGSLHLYSGAFAAAIVITSIGVLIYLKR 151
                   YSG  A A ++  +G + +L++
Sbjct: 518 -----AAAYSGVAAGAALVAGLGFMAFLRK 540

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BLAST of Lsi01G019840 vs. TrEMBL
Match: A0A0A0KYM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G495220 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-68
Identity = 134/153 (87.58%), Postives = 142/153 (92.81%), Query Frame = 1


Query: 1   MSAFMASEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGA 60
           MSAFMASEG L YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQR+GAT+ A
Sbjct: 387 MSAFMASEGTLNYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRIGATDSA 446

Query: 61  SRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLD 120
           +RPLLLYED+EGDKVVLATDGDLSGAVNHA+S G KVLRLHLDFP+SIQQ E Q DA LD
Sbjct: 447 NRPLLLYEDDEGDKVVLATDGDLSGAVNHARSIGLKVLRLHLDFPESIQQTEAQNDAMLD 506

Query: 121 QKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
           QKRGSLHLYSGAFAAAI +TSIGVL YLKRSK+
Sbjct: 507 QKRGSLHLYSGAFAAAIALTSIGVLFYLKRSKV 539

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BLAST of Lsi01G019840 vs. TrEMBL
Match: W9RJ31_9ROSA (CBS domain-containing protein OS=Morus notabilis GN=L484_010945 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-44
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 1


Query: 1   MSAFMASEGALY--YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATN 60
           MSAFM S+G     YPSLGLGN+F+FKFED KGRVHR+NCGTE+LDEL+S VMQR+GA +
Sbjct: 383 MSAFMTSDGTEIGKYPSLGLGNTFSFKFEDFKGRVHRLNCGTESLDELLSTVMQRIGAES 442

Query: 61  GASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDAT 120
           G+  P +LYED+EGDKV+LATD DL  AV HA+S G KVLRLHLDF  S QQR +++   
Sbjct: 443 GSDHPQILYEDDEGDKVLLATDSDLVSAVTHARSIGLKVLRLHLDFSDSNQQRTLESSTA 502

Query: 121 LDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
             Q       ++G  A A V+TSIGVL+YLKR+ +
Sbjct: 503 TTQGTRWTSSHTGLLAGAAVLTSIGVLLYLKRTNL 537

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BLAST of Lsi01G019840 vs. TrEMBL
Match: F6H4G2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02750 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-44
Identity = 93/158 (58.86%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 1   MSAFMASEGAL----YYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGA 60
           +SA MA++GA      YPSLGLGNSFAFKFED+KGRVHR NCGTE+LDELVS VMQR+GA
Sbjct: 382 LSAVMAADGAEPGRNMYPSLGLGNSFAFKFEDIKGRVHRFNCGTESLDELVSAVMQRIGA 441

Query: 61  TNGASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQ-REIQT 120
           +    RP +LYED+EGDKV+L+TD DL  AV+HA+  G+KVLRL LD+ +SIQ+ R  QT
Sbjct: 442 STDQDRPQILYEDDEGDKVLLSTDSDLVSAVSHARVVGQKVLRLQLDYSESIQETRRPQT 501

Query: 121 DATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
                +  G + L+SG  A+A++IT++G+++YLKR+K+
Sbjct: 502 GTDTVRGTGGVFLHSGILASAVIITAVGLMVYLKRAKL 539

[Close]

BLAST of Lsi01G019840 vs. TrEMBL
Match: B9HF69_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04880g PE=4 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 96/157 (61.15%), Postives = 116/157 (73.89%), Query Frame = 1


Query: 1   MSAFMASEGALY--YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATN 60
           MSA MAS+GA    YPSLGLGNSFAFKFEDLKGR+HR+NC TE LDEL+S V+QR+GA +
Sbjct: 395 MSALMASDGAELGRYPSLGLGNSFAFKFEDLKGRIHRLNCCTENLDELLSTVLQRIGAES 454

Query: 61  GASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDF--PKSIQQREIQTD 120
              RP LLYED++GDKV+LATDGDL GAV+HA+S G KVLRLHLD+  P +     + T 
Sbjct: 455 EQDRPQLLYEDDDGDKVLLATDGDLIGAVSHARSVGLKVLRLHLDYYDPSNQTTSPLDTT 514

Query: 121 ATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
            T  Q+ G +   SG F A +V+  I V+ YLKRSKM
Sbjct: 515 TTATQRIGLVSFRSGIFVAGVVLAGIAVVAYLKRSKM 551

[Close]

BLAST of Lsi01G019840 vs. TrEMBL
Match: A0A061DRZ9_THECC (CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 2 OS=Theobroma cacao GN=TCM_001612 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 98/157 (62.42%), Postives = 115/157 (73.25%), Query Frame = 1


Query: 1   MSAFMASEGA-----LYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVG 60
           MSA MAS+G        YPSLGLGNSFAFKFEDLKGRVHR NCGTE LDEL+S +M R+ 
Sbjct: 318 MSAIMASDGGDAGKLSSYPSLGLGNSFAFKFEDLKGRVHRFNCGTENLDELLSAIMPRIA 377

Query: 61  ATNGASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQT 120
           ++N   RP LLYED+EGDKV+LATD DL  AVNHA+S G KVLRLHLD   S QQ++ Q+
Sbjct: 378 SSNDHGRPQLLYEDDEGDKVLLATDSDLIVAVNHARSRGLKVLRLHLDSADSDQQKKSQS 437

Query: 121 DATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSK 153
             T  ++ G + L SG  A  +VIT I VL+YLKRSK
Sbjct: 438 SIT-SKRTGWVSLRSGLLAGVVVITGISVLVYLKRSK 473

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BLAST of Lsi01G019840 vs. TAIR10
Match: AT3G52950.1 (AT3G52950.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein)

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-37
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 13  YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNG--ASRPLLLYEDN 72
           YPSLGLGNSF+FKFEDLKGRVHR   G E L+EL+ +VMQR+G+ N     RP ++YED+
Sbjct: 408 YPSLGLGNSFSFKFEDLKGRVHRFTSGAENLEELMGIVMQRIGSDNNNVEQRPQIIYEDD 467

Query: 73  EGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLDQKRGSLHLYS 132
           EGDKV++ +D DL GAV  A+STG+KVLRLHLDF +S   R + ++ T  +K  S    S
Sbjct: 468 EGDKVLITSDSDLVGAVTLARSTGQKVLRLHLDFTES--TRSLSSETTQLKKGDSRDRGS 527

Query: 133 G--------AFAAAIVITSIGVLIYLKRSK 153
           G            A+V+TSI +++YLKRSK
Sbjct: 528 GWVSWRGGVVVTGAVVLTSIAIVVYLKRSK 555

[Close]

BLAST of Lsi01G019840 vs. TAIR10
Match: AT2G36500.1 (AT2G36500.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein)

HSP 1 Score: 134.0 bits (336), Expect = 7.6e-32
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 1   MSAFMA-SEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNG 60
           MSA +  SEG    PS GL +SFAFKFED KGRV R N   E+ +EL+SVVMQR  A +G
Sbjct: 387 MSAMLINSEGKQSCPSQGLVSSFAFKFEDRKGRVQRFNSTGESFEELMSVVMQRCEADSG 446

Query: 61  ASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATL 120
                ++Y+D+EGDKV+++ D DL  AV  A+S G+KVLRLHLDF ++I   E   D + 
Sbjct: 447 LQ---IMYQDDEGDKVLISRDSDLVAAVTFARSLGQKVLRLHLDFTETIAPLETIADLS- 506

Query: 121 DQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSK 153
           +   G +   +G  A AIV+TSIG+ +YLKRSK
Sbjct: 507 EGNGGCVWWQTGVLAGAIVLTSIGLFVYLKRSK 535

[Close]

BLAST of Lsi01G019840 vs. TAIR10
Match: AT5G50640.1 (AT5G50640.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-24
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGAT-NGASRPLLLYEDNEGD 74
           S    N+FAFK +D KGR+HR  C T++L  L++ ++QR+G      + P ++YED + D
Sbjct: 407 SFSYPNTFAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDND 466

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE--IQTDATLDQKRGSLHLYSG 134
           KVVLA+D DL  AV HAKS G K L+LHLD+ +    R      D   DQ       Y  
Sbjct: 467 KVVLASDNDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSNSWAAAYKT 526

Query: 135 AFAAAIVITSIGVLIYLKRS 152
             A A +   +GVL+YLKR+
Sbjct: 527 VAAGAALAAGLGVLVYLKRN 546

[Close]

BLAST of Lsi01G019840 vs. TAIR10
Match: AT5G50530.1 (AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-24
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGAT-NGASRPLLLYEDNEGD 74
           S    N+FAFK +D KGR+HR  C T++L  L++ ++QR+G      + P ++YED + D
Sbjct: 407 SFSYPNTFAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDND 466

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE--IQTDATLDQKRGSLHLYSG 134
           KVVLA+D DL  AV HAKS G K L+LHLD+ +    R      D   DQ       Y  
Sbjct: 467 KVVLASDNDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSNSWAAAYKT 526

Query: 135 AFAAAIVITSIGVLIYLKRS 152
             A A +   +GVL+YLKR+
Sbjct: 527 VAAGAALAAGLGVLVYLKRN 546

[Close]

BLAST of Lsi01G019840 vs. TAIR10
Match: AT5G63490.1 (AT5G63490.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein)

HSP 1 Score: 90.5 bits (223), Expect = 9.7e-19
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 1


Query: 15  SLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGASR-PLLLYEDNEGD 74
           S    N+F+FK ED K R HR    T +L E+++ ++QRVG        P +LYED + D
Sbjct: 398 SFPFANTFSFKIEDKKHRKHRFISDTRSLTEVITAIIQRVGDDIDPDNFPQILYEDEDHD 457

Query: 75  KVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQRE-------------IQTDATLD 134
           KV+LA+D DL  A+ HAKS G K LRLHLD  +  + R              ++TDA   
Sbjct: 458 KVLLASDSDLQAAIEHAKSIGWKSLRLHLDDSREGKGRRRRRASGSAESMEYVETDAW-- 517

Query: 135 QKRGSLHLYSGAFAAAIVITSIGVLIYLKR 151
                   YSG  A A ++  +G + +L++
Sbjct: 518 -----AAAYSGVAAGAALVAGLGFMAFLRK 540

[Close]

BLAST of Lsi01G019840 vs. NCBI nr
Match: gi|449457321|ref|XP_004146397.1| (PREDICTED: CBS domain-containing protein CBSCBSPB3 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.8e-68
Identity = 134/153 (87.58%), Postives = 142/153 (92.81%), Query Frame = 1


Query: 1   MSAFMASEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGA 60
           MSAFMASEG L YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQR+GAT+ A
Sbjct: 387 MSAFMASEGTLNYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRIGATDSA 446

Query: 61  SRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLD 120
           +RPLLLYED+EGDKVVLATDGDLSGAVNHA+S G KVLRLHLDFP+SIQQ E Q DA LD
Sbjct: 447 NRPLLLYEDDEGDKVVLATDGDLSGAVNHARSIGLKVLRLHLDFPESIQQTEAQNDAMLD 506

Query: 121 QKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
           QKRGSLHLYSGAFAAAI +TSIGVL YLKRSK+
Sbjct: 507 QKRGSLHLYSGAFAAAIALTSIGVLFYLKRSKV 539

[Close]

BLAST of Lsi01G019840 vs. NCBI nr
Match: gi|659083040|ref|XP_008442154.1| (PREDICTED: CBS domain-containing protein CBSCBSPB3 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-67
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1


Query: 1   MSAFMASEGALYYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATNGA 60
           MSAFMASEG L YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQR+GATN A
Sbjct: 387 MSAFMASEGTLNYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRIGATNSA 446

Query: 61  SRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDATLD 120
           SRPLLLYED+EGDKVVLATDGDLSGAVNHA+S G KVLRLHLDFP+SIQQ E Q DA L 
Sbjct: 447 SRPLLLYEDDEGDKVVLATDGDLSGAVNHARSIGLKVLRLHLDFPESIQQTEAQNDAMLG 506

Query: 121 QKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
            KRGSL LYSGAFAAA+V+TSIGVL YLKRSKM
Sbjct: 507 WKRGSLPLYSGAFAAAVVLTSIGVLFYLKRSKM 539

[Close]

BLAST of Lsi01G019840 vs. NCBI nr
Match: gi|703111040|ref|XP_010099759.1| (CBS domain-containing protein [Morus notabilis])

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 1


Query: 1   MSAFMASEGALY--YPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGATN 60
           MSAFM S+G     YPSLGLGN+F+FKFED KGRVHR+NCGTE+LDEL+S VMQR+GA +
Sbjct: 383 MSAFMTSDGTEIGKYPSLGLGNTFSFKFEDFKGRVHRLNCGTESLDELLSTVMQRIGAES 442

Query: 61  GASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQREIQTDAT 120
           G+  P +LYED+EGDKV+LATD DL  AV HA+S G KVLRLHLDF  S QQR +++   
Sbjct: 443 GSDHPQILYEDDEGDKVLLATDSDLVSAVTHARSIGLKVLRLHLDFSDSNQQRTLESSTA 502

Query: 121 LDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
             Q       ++G  A A V+TSIGVL+YLKR+ +
Sbjct: 503 TTQGTRWTSSHTGLLAGAAVLTSIGVLLYLKRTNL 537

[Close]

BLAST of Lsi01G019840 vs. NCBI nr
Match: gi|296082621|emb|CBI21626.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 6.3e-44
Identity = 93/158 (58.86%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 1   MSAFMASEGAL----YYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGA 60
           +SA MA++GA      YPSLGLGNSFAFKFED+KGRVHR NCGTE+LDELVS VMQR+GA
Sbjct: 399 LSAVMAADGAEPGRNMYPSLGLGNSFAFKFEDIKGRVHRFNCGTESLDELVSAVMQRIGA 458

Query: 61  TNGASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQ-REIQT 120
           +    RP +LYED+EGDKV+L+TD DL  AV+HA+  G+KVLRL LD+ +SIQ+ R  QT
Sbjct: 459 STDQDRPQILYEDDEGDKVLLSTDSDLVSAVSHARVVGQKVLRLQLDYSESIQETRRPQT 518

Query: 121 DATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
                +  G + L+SG  A+A++IT++G+++YLKR+K+
Sbjct: 519 GTDTVRGTGGVFLHSGILASAVIITAVGLMVYLKRAKL 556

[Close]

BLAST of Lsi01G019840 vs. NCBI nr
Match: gi|225438337|ref|XP_002272502.1| (PREDICTED: CBS domain-containing protein CBSCBSPB3 [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 6.3e-44
Identity = 93/158 (58.86%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 1   MSAFMASEGAL----YYPSLGLGNSFAFKFEDLKGRVHRVNCGTETLDELVSVVMQRVGA 60
           +SA MA++GA      YPSLGLGNSFAFKFED+KGRVHR NCGTE+LDELVS VMQR+GA
Sbjct: 382 LSAVMAADGAEPGRNMYPSLGLGNSFAFKFEDIKGRVHRFNCGTESLDELVSAVMQRIGA 441

Query: 61  TNGASRPLLLYEDNEGDKVVLATDGDLSGAVNHAKSTGKKVLRLHLDFPKSIQQ-REIQT 120
           +    RP +LYED+EGDKV+L+TD DL  AV+HA+  G+KVLRL LD+ +SIQ+ R  QT
Sbjct: 442 STDQDRPQILYEDDEGDKVLLSTDSDLVSAVSHARVVGQKVLRLQLDYSESIQETRRPQT 501

Query: 121 DATLDQKRGSLHLYSGAFAAAIVITSIGVLIYLKRSKM 154
                +  G + L+SG  A+A++IT++G+++YLKR+K+
Sbjct: 502 GTDTVRGTGGVFLHSGILASAVIITAVGLMVYLKRAKL 539

The following BLAST results are available for this feature:

BLAST of Lsi01G019840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3295_ARATH	1.4e-35	53.33	CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=...	[more]
Y2650_ARATH	1.4e-30	50.98	CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=...	[more]
Y5053_ARATH	4.7e-23	42.14	CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=...	[more]
Y5064_ARATH	4.7e-23	42.14	CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=...	[more]
Y5349_ARATH	1.7e-17	36.67	CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=...	[more]

BLAST of Lsi01G019840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYM2_CUCSA	1.9e-68	87.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G495220 PE=4 SV=1	[more]
W9RJ31_9ROSA	2.6e-44	60.65	CBS domain-containing protein OS=Morus notabilis GN=L484_010945 PE=4 SV=1	[more]
F6H4G2_VITVI	4.4e-44	58.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02750 PE=4 SV=...	[more]
B9HF69_POPTR	1.3e-43	61.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04880g PE=4 SV=2	[more]
A0A061DRZ9_THECC	2.8e-43	62.42	CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 2 OS=Theobro...	[more]

BLAST of Lsi01G019840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52950.1	7.9e-37	53.33	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT2G36500.1	7.6e-32	50.98	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT5G50640.1	2.6e-24	42.14	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT5G50530.1	2.6e-24	42.14	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT5G63490.1	9.7e-19	36.67	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]

BLAST of Lsi01G019840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457321\|ref\|XP_004146397.1\|	2.8e-68	87.58	PREDICTED: CBS domain-containing protein CBSCBSPB3 [Cucumis sativus]	[more]
gi\|659083040\|ref\|XP_008442154.1\|	3.1e-67	87.58	PREDICTED: CBS domain-containing protein CBSCBSPB3 [Cucumis melo]	[more]
gi\|703111040\|ref\|XP_010099759.1\|	3.7e-44	60.65	CBS domain-containing protein [Morus notabilis]	[more]
gi\|296082621\|emb\|CBI21626.3\|	6.3e-44	58.86	unnamed protein product [Vitis vinifera]	[more]
gi\|225438337\|ref\|XP_002272502.1\|	6.3e-44	58.86	PREDICTED: CBS domain-containing protein CBSCBSPB3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019840.1	Lsi01G019840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PFAM	PF00564	PB1	coord: 22..103 score: 1.4
IPR000270	PB1 domain	SMART	SM00666	PB1_new	coord: 21..105 score: 1.1
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 19..105 score: 18
None	No IPR available	GENE3D	G3DSA:3.10.20.240		coord: 19..103 score: 6.7
None	No IPR available	PANTHER	PTHR13780	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	coord: 38..153 score: 1.3
None	No IPR available	PANTHER	PTHR13780:SF48	CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB1-RELATED	coord: 38..153 score: 1.3
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 13..109 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019840	Csa4G495220	Cucumber (Chinese Long) v2	culsiB250
Lsi01G019840	CSPI04G19940	Wild cucumber (PI 183967)	cpilsiB250
Lsi01G019840	Cucsa.353730	Cucumber (Gy14) v1	cgylsiB572
Lsi01G019840	CmaCh07G012710	Cucurbita maxima (Rimu)	cmalsiB788
Lsi01G019840	CmoCh07G013080	Cucurbita moschata (Rifu)	cmolsiB776
Lsi01G019840	Cla011639	Watermelon (97103) v1	lsiwmB146
Lsi01G019840	MELO3C008947	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019840	ClCG04G001750	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019840	MELO3C008947.2	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019840	Cla97C04G069590	Watermelon (97103) v2	lsiwmbB133
Lsi01G019840	Bhi03G002274	Wax gourd	lsiwgoB173
Lsi01G019840	Cp4.1LG19g01030	Cucurbita pepo (Zucchini)	cpelsiB400
Lsi01G019840	CsGy4G019150	Cucumber (Gy14) v2	cgyblsiB243
Lsi01G019840	Carg12695	Silver-seed gourd	carlsiB257
Lsi01G019840	CsaV3_4G030800	Cucumber (Chinese Long) v3	cuclsiB279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019840	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019840	Cucurbita pepo (Zucchini)	cpelsiB399
Lsi01G019840	Silver-seed gourd	carlsiB259
Lsi01G019840	Silver-seed gourd	carlsiB260
Lsi01G019840	Silver-seed gourd	carlsiB430
Lsi01G019840	Watermelon (97103) v2	lsiwmbB136
Lsi01G019840	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019840	Cucurbita moschata (Rifu)	cmolsiB780