Lsi01G019700 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Vacuolar protein sorting-associated protein 20 like 2
Location	chr01 : 25745492 .. 25749960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCCCGGAAGGTGATGTTAGGCCTCCAGGAGTAAAAAGGGGAGTTCGGTGTGAAAGTTTGCTAGGGAACAGTAAATTATAAAAGGGGCGGGGACCACAGAATGTTTTTGTGTGGGAGTGAGTGTGGTCAGTAAATATGTGTTTTGTTAGGGTAGACATTTTCTATGCTTTTACTCAGTAGAAAGTTCTAAGTGAAAAGGGGAGAGAACCAGACCTCTCGAATTGGCTGGAAGTTGTAATGCCTCAAGGGCATTTTTGATATCGTAATCAATACATCGGAGGCAATACCTTGTAGTGAATTTCTTTCTTTTTGAGTTAATTCACTCAAGTCTTTAATGTTTATGACGAGCTTCAAAGGCACTCCCCATGGTTAAGCATCTCACCAAACTGCTGCATTATGTGCAAAAGTGATGGGGAATCACACATCCACCTCTTCTTTCGGTGTCACTTTGCCAAAACCTTTTGGGACTTCATCCTTCAAGAATTTGGATGGCAGAACGCTTTTCCTCAAGATGTTTGGGCATTCTCCATTTTATTTTCAATGGCCATCCATTTAGGAAGGATTGGAAAACTCTTTGACTGAGGTTTGCTCGGGCCTTCTTTTGGTCGACATGGTTGGAGCATAATTCTCATCTGCACAGACAAGGAAAATGATACCTTGCATATAACTGGCGTAAATTGAGTCTCCTTTTGTAATTATATTTTATCTAATATTTTGAGTTTTGTCAAATTGGAAATCCTTTTATAATCATTGAGATGACCTCATCATTTTGTAATTTTATTTTATCGATGAAACAATTTTGTTTCCCATAAAAAAATATAACTAGTTTCCTTTTCAAATTATTGGTACATACAATTCTAGGTTAAAATAATGTACTTTGAATCTTATTCCATTTTAGTCTCTACACTTTCAATAAATCTTAATATTAGTTCTTATTGTCGATTCAATGTTAATTTTTATTAACATTTGTAAAATAATGATAATAATAATCTCAATTTAAGAAAACACTTGGTGAGAATGTTTTTCATAATTTATTTTTTGTTTTAGAGAAACCACAAACTAATAGTAGGACTAATTTTAAGATTTATTGAGAGCAGGAAAATTAAATTTGGACATTTGAAAATATAGGGATTAAAATAATAATTTTATTTGTCTATTTATTCACATGCACCTCATTTCATCTAGATGATGCTGTTTTGTCGCCTCTTGCCTTGAGGTGAGAGAGGCTTGTCACCTTGATATGTGTTTTGGTATGCATCTGGTGTTTTGAAAAAAAGGATTAAAACAAATGTAAGTCTGATTAATATTAATGCATTTTTTCTCAAAATTCTTCTATAAAACAATGGAACTTTAATGATATCTCATAAAATTAATGTATTCTTTTTTTAAAAAGGCTTGGAACCTTGAGGGATTTTCCATACTTTAGAATGTTGTCATAAACTCCTGTTTGATTATCCAAATTTAATTTATTCAAATTGTACATATTGATGAATTATGAATATTAATTAAACAATAATTTAAATAATCTTTTATGTCTTCTATAAATCATGGATTGAATTATGCATGACTACAAATCATCATAAAGTAAAGTTGCATTTTACCCTGGGCATAAGACCAAAAACCAATAAATATCTCTAAATGCAGTCAGATATTACCTAAAGTTACTTTTGTCTGGGTTTCCTTCATAGGAATGCAACTGTTTTTCACTTTGAAAATTGAATAATTGTTTGTTGTGTTTCCGTGACTTTTTATTCCATAGCTTGATGCTGTCATTGAAGCAGAAAAGAATGCTGCAAGAGAGTTAGTTCGACAAAAGAAAAAGGATAGGGCCTTGTTAGCTTTGAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTTGATGCCTGGCTGATTAATGTTGAACAACAAGTGAGTTCCTCTTGATTTTTTCCTTGTCTATTCAAATTTCATTTTCTTCTCCCTTCTAACTCCAAATTTGTACTTTTTTGTTTCTACTAAAAGTAATGATTATGTTATATCTTAAAATCAAGATTTTGATGGTTTGCAATAGTTAGGGTTTTCTGATTCGATATTAACAATTAAAGTGTCTCCTTCACTATTTTATTCATGTTTAGAACATTTTGTATTTTAGAAATTTGTATTCGTGCTTTAATATAGTTGTTGGCTCAGTTGTCAGATATTGAATTGGCCAGCAAACAAAAATCTGTTTTTGAAAGTTTGAAGGCTGGTAATAATGCGATCAAAGCTATACAAAGTGAAATTAATATTGATGATGTCCAAAGGCTGATGGATGATACTGCTGAAGCTAAGGCATATCAAGATGTAAGTTCGTGAGTTATTTCAATTGATCGTTTTGTTAGTATTCATATTTGAATTTTTATTTTATTACCTGGTTTACCAGTCAGATTATGTTGAATAAAATTGCATGTAGTTCTTAATTATGATGAAATTAAATATTCTTGTGTTCCAAAAAGTAAGATACATAACCCTCTTATATAGGATTAAGACCCAATACAATAAACAAAAGATGAATAGAATAAAACCATTAATGAATATACTTAATTAAAAGATTTCACGGTTAATATAGCCAATGGTACATTAGAAAGTGTTTTTCATTCACTTGAAGAAAATTACTGCTAAAGTTCTCTTCCCTTCTCAGTAAGTCTTCCACTTAAGGTCGACTTAGATCTTAGCTTTTCATCAATTCAAAACACATAGGAATTGATTTACTTTCTTAAGATTTCGTTGGTGAGGAAGGAGATTTAATCTTGCTTTTGTTAATTTTTCCCAGACAGATGGCCATTTGCATCGTTACCAAATTTTTGTTATGTTGAGCTCTCTGACATATTATACAAAATTTGAAGTTGATTAGCACCATGTTTTGTAAAGAAAGGGTTATGATTATGGCATGAAAGTTATGAAAATATTGGAAGAGTGCAAGCCTTTGAAATGTTTAGGGAATTTGTTTATGAGCGGTCTTGTATGTTGGCTTTAAGTAATTATAAATTTGTATGTGAGGGCATTGTGTATTGTAACCAAATTAGATTTTTTGGGATCATCCCATTTGTCTACTTCATCGATTTAATATCTGTGTCTCAATTTCGTTATGTTTCCCTTTTCTACTGCCTAAATTTTATTTATATGTTTGAAGGAAATTAATGCCATCTTAGGAGAGAAATTATCAGAAGAAGATGAGGAACAAATCTTAGCAGAGTTTGAGAGCTTGGAAGCTCAGGTATTGTGTGTTTTGTTGTATTATCATTTTTCCTCCTGCATGATAGGGTTGGTCTGGACCGCCCAGTCAGTCATTTAATTGGTGGTCAAAATAGATTTCTGCATGTAGAATATTATTGATTTGCTTAGGAGTGAGTACTTAAGTATTCACTTATAAATTAATTTAATTCTGAATTTAGTTGGGAATAACGTTCAATAGAGATGCTCCACTGTGGCTGTTGTTGCAAATTGAATTTCATCATAATAGCTGTGTAGTGCAAATTGCAGAATAAGATTGGGAAATCCTATTCTGGGTCTTGGACTTTCATTGTTGTTTGTTCTTGAAGCTCACACAAAGAGTTATTCTACTCATTATCATTATTTTTATTATTATTATTTATTTAATAGAAACCTAAATTCATTTTTTGTCTATTTAACTAACTCATAGATTCAGACATTTTCGGGCCCAAGTGCTGGTTTTCAAATGAATTTGGGTTTCCATAAGGACGGACTAAAATAGGACTTCTTTTAAGTTTTGAGAGACGAAATTGAAGCCTAGAAAGTCTTGATGGATAGTCAAATCATGACTCTTGAATATATAATAGGGTATGAATATAAAACCAGAATAAGATATAAACTCAAGATTAATAGCTATGACTACTGCCCGATTGTCTTTTATTATACTATCTGAAGGCAAACTCCATCGACGTTTTTCTCAGCTCACTGTTCAAGATCTGCCCGAGGTCCCAACATCTGAAGAAAATGCTGAAAAGTTGGATCTTCCCGACGTGCCCTCGAAAAAACCTGTTGCAGCTGATGCCATTGAAGAAGATGCTGAAATTGTTTCATCCGATGCACCCACAAAGAGAAGAGGTTTCTTTCTCTTTCTGGACTCTTATCACAAAATGGAAAAGAGAAAAAAGGAAAAAAGGTTACCATTTTACATTCACTGGTTTCATAACACATTATAAATTTGTTGAATGCAGTTATGGAAGAACCGTTGGCAGCATAAATGTGGGTACTTTGATGGAGGTTGCTCATAATGTTGATGTAACTGGTGAAGTGGTTTGAGCTGAGCATCTGTTATTTGATTTTGTGAATTCTTACTAAGGGCCATAATGGCCCTTTCACCAATATCATGTTTGTACAGACACTTCCTCATGCACGTATATAAATTTACTTTCTTTCTGCTTAGGGTTGTGTTTTCTAAAGGCTTGTCTTTTGTTTTTTGTTTTTTTTTTTTTTTC

mRNA sequence

ATGGATCCCCGGAAGCTTGATGCTGTCATTGAAGCAGAAAAGAATGCTGCAAGAGAGTTAGTTCGACAAAAGAAAAAGGATAGGGCCTTGTTAGCTTTGAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTTGATGCCTGGCTGATTAATGTTGAACAACAATTGTTGGCTCAGTTGTCAGATATTGAATTGGCCAGCAAACAAAAATCTGTTTTTGAAAGTTTGAAGGCTGGTAATAATGCGATCAAAGCTATACAAAGTGAAATTAATATTGATGATGTCCAAAGGCTGATGGATGATACTGCTGAAGCTAAGGCATATCAAGATGAAATTAATGCCATCTTAGGAGAGAAATTATCAGAAGAAGATGAGGAACAAATCTTAGCAGAGTTTGAGAGCTTGGAAGCTCAGCTCACTGTTCAAGATCTGCCCGAGGTCCCAACATCTGAAGAAAATGCTGAAAAGTTGGATCTTCCCGACGTGCCCTCGAAAAAACCTGTTGCAGCTGATGCCATTGAAGAAGATGCTGAAATTGTTTCATCCGATGCACCCACAAAGAGAAGAGTTATGGAAGAACCGTTGGCAGCATAAATGTGGGTACTTTGATGGAGGTTGCTCATAATGTTGATGTAACTGGTGAAGTGGTTTGAGCTGAGCATCTGTTATTTGATTTTGTGAATTCTTACTAAGGGCCATAATGGCCCTTTCACCAATATCATGTTTGTACAGACACTTCCTCATGCACGTATATAAATTTACTTTCTTTCTGCTTAGGGTTGTGTTTTCTAAAGGCTTGTCTTTTGTTTTTTGTTTTTTTTTTTTTTTC

Coding sequence (CDS)

ATGGATCCCCGGAAGCTTGATGCTGTCATTGAAGCAGAAAAGAATGCTGCAAGAGAGTTAGTTCGACAAAAGAAAAAGGATAGGGCCTTGTTAGCTTTGAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTTGATGCCTGGCTGATTAATGTTGAACAACAATTGTTGGCTCAGTTGTCAGATATTGAATTGGCCAGCAAACAAAAATCTGTTTTTGAAAGTTTGAAGGCTGGTAATAATGCGATCAAAGCTATACAAAGTGAAATTAATATTGATGATGTCCAAAGGCTGATGGATGATACTGCTGAAGCTAAGGCATATCAAGATGAAATTAATGCCATCTTAGGAGAGAAATTATCAGAAGAAGATGAGGAACAAATCTTAGCAGAGTTTGAGAGCTTGGAAGCTCAGCTCACTGTTCAAGATCTGCCCGAGGTCCCAACATCTGAAGAAAATGCTGAAAAGTTGGATCTTCCCGACGTGCCCTCGAAAAAACCTGTTGCAGCTGATGCCATTGAAGAAGATGCTGAAATTGTTTCATCCGATGCACCCACAAAGAGAAGAGTTATGGAAGAACCGTTGGCAGCATAA

Protein sequence

MDPRKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDIELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSEEDEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSSDAPTKRRVMEEPLAA

Homology

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BLAST of Lsi01G019700 vs. Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.6e-62
Identity = 136/196 (69.39%), Postives = 168/196 (85.71%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +KL+ VIEAEK AAR+L+R+K+KDRALLAL+KK+ QEELLKQVD W+INVEQQL    +D
Sbjct: 33  QKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQL----TD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IEL SKQK+VFESLK GN+AIKAIQSE+++DDVQ+LMDDTA+AKAYQDE+NAILGEKLS 
Sbjct: 93  IELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSE-ENAEKLDLPDVPSKKPVAADAIEEDAEIVS 183
           EDEE ILAEF++LE+QL V ++PEVPT E E +EKLDLPDVP+K PVA+     +AEI  
Sbjct: 153 EDEEDILAEFDNLESQLIVDEMPEVPTKESEESEKLDLPDVPTKTPVAS-----NAEITP 212

Query: 184 SDAPTKRRVMEEPLAA 199
           +++ TK +V+EEPL A
Sbjct: 213 AESATKTKVLEEPLPA 219

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BLAST of Lsi01G019700 vs. Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.6e-61
Identity = 136/198 (68.69%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++L+ VIEAEK AAR+L+R+K+KDRALLALKKK+ QEELLKQVD WLINVEQQL    +D
Sbjct: 33  QQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IEL SKQK+VFESLK GNNAIKAIQSE+N+DDVQ+LMDDTAEAKAYQDE++AILGEKLS 
Sbjct: 93  IELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSE---ENAEKLDLPDVPSKKPVAADAIEEDAEI 183
           EDEE+ILAEF++LE+ L V+D+PEVPT+E   E  EK+DLPDVP+K PVA+         
Sbjct: 153 EDEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPVAS--------- 212

Query: 184 VSSDAPTKRRVMEEPLAA 199
            +    TKR+V+EEPL A
Sbjct: 213 -NETTSTKRKVLEEPLEA 216

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BLAST of Lsi01G019700 vs. Swiss-Prot
Match: CHMP6_DICDI (Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-20
Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 1


Query: 17  ARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDIELASKQKSVFES 76
           A+E  +  KK++ALLALKKKK QE++L +  A L N+E+ +    +++E A  Q  +FES
Sbjct: 48  AKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELI----ANVEQAEIQVRIFES 107

Query: 77  LKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSEEDEEQILAEFESL 136
           LK GN ++K IQ E++++DV+ LM++TAEA  YQ++I+  L  K S+E+E+ +L E + +
Sbjct: 108 LKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEM 167

Query: 137 EAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEE 177
           E QL  Q  P+VP  E    K++LP          DAIEE
Sbjct: 168 EKQLNAQQYPKVP--ETQLPKIELP--------IEDAIEE 193

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BLAST of Lsi01G019700 vs. Swiss-Prot
Match: CHMP6_DANRE (Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 60/166 (36.14%), Postives = 106/166 (63.86%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +++   ++ E+  A++L++  KKD+ALL LKKK+ Q++LL++ +  + N+E+ +     D
Sbjct: 35  KRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMV----QD 94

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IE A  +  V E LK GN+ +K +   ++I++V+++MD+T +A  YQ +I+ +L   L++
Sbjct: 95  IEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQ 154

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPV 170
           EDEE +LAE E++       +LPEVP  E       LP+VP ++PV
Sbjct: 155 EDEEAVLAELEAITQGEADLELPEVPGEE-------LPEVPEQEPV 189

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BLAST of Lsi01G019700 vs. Swiss-Prot
Match: CHMP6_CHICK (Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 59/169 (34.91%), Postives = 102/169 (60.36%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +++   +E E+  AR+L+++ KK++A+L LKKK+ QE+LL + D  + N+E+ +     D
Sbjct: 35  KRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMV----QD 94

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IE    +  V E LK GN  +  +   ++I++V+R++ +T +A  YQ +I+ IL   L+E
Sbjct: 95  IEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTE 154

Query: 124 EDEEQILAEFESL-EAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAA 172
           EDE+ IL E  ++ + QL + D+P  P  EE  E   + + P  + VAA
Sbjct: 155 EDEDAILEELNAITQEQLELPDVPSEPLPEEPPEATPVKNRPKPELVAA 199

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BLAST of Lsi01G019700 vs. TrEMBL
Match: A0A0A0L1A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526050 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-83
Identity = 181/194 (93.30%), Postives = 185/194 (95.36%), Query Frame = 1


Query: 5   KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDI 64
           KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVD WLINVEQQL    SDI
Sbjct: 7   KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDTWLINVEQQL----SDI 66

Query: 65  ELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSEE 124
           ELASKQK+VFESLKAGNNAIKAIQSEINIDDVQ+LMDDTAEAKAYQDEINAILGEKLSEE
Sbjct: 67  ELASKQKAVFESLKAGNNAIKAIQSEINIDDVQKLMDDTAEAKAYQDEINAILGEKLSEE 126

Query: 125 DEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSSD 184
           DEEQILAEFESLEAQLTV DLPEVPTSEE  EKLDLP+VPSKKPVAADAIEEDAE +SSD
Sbjct: 127 DEEQILAEFESLEAQLTVDDLPEVPTSEEQEEKLDLPEVPSKKPVAADAIEEDAETISSD 186

Query: 185 APTKRRVMEEPLAA 199
           APTKRRVMEEPLAA
Sbjct: 187 APTKRRVMEEPLAA 196

[Close]

BLAST of Lsi01G019700 vs. TrEMBL
Match: A0A067LAQ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22917 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-67
Identity = 150/197 (76.14%), Postives = 175/197 (88.83%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +KL+ VIEAEKNAAR+L+RQK+KDRALLALKKKK QEELLKQVD WLINVEQQL    +D
Sbjct: 33  QKLEEVIEAEKNAARDLIRQKRKDRALLALKKKKTQEELLKQVDTWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLKAGN+A+KAIQSEIN+DDVQ+LMDD+AEAKAYQDEINAILGEKLS 
Sbjct: 93  IELASKQKAVFESLKAGNDAVKAIQSEINLDDVQKLMDDSAEAKAYQDEINAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPT--SEENAEKLDLPDVPSKKPVAADAIEEDAEIV 183
           EDEE+ILAEFE+LE Q+T++D+P VPT  S+E+ EKLDLPDVP+K PVA DA++EDAE+ 
Sbjct: 153 EDEEEILAEFENLETQITIEDMPTVPTMPSKEHEEKLDLPDVPTKPPVALDAVKEDAEV- 212

Query: 184 SSDAPTKRRVMEEPLAA 199
                TKR+VMEEPL A
Sbjct: 213 ----STKRKVMEEPLPA 220

[Close]

BLAST of Lsi01G019700 vs. TrEMBL
Match: V4T722_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.7e-67
Identity = 150/197 (76.14%), Postives = 173/197 (87.82%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++LDAVIEAEK AAR+L+RQK+KDRALLALKKKKAQEELLKQVD WLINVEQQL    +D
Sbjct: 33  QQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLK+G NAIKAIQSEIN++DVQ+LMDDT EAKAYQDEINAILGEKLS 
Sbjct: 93  IELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTS--EENAEKLDLPDVPSKKPVAADAIEEDAEIV 183
           EDEE+ILAEF++LEAQL VQ++PEVPT    E  EKLDLP+VP+K PVA+  + +DAEI 
Sbjct: 153 EDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIA 212

Query: 184 SSDAPTKRRVMEEPLAA 199
            ++A TKRRVMEEPL A
Sbjct: 213 PAEASTKRRVMEEPLPA 225

[Close]

BLAST of Lsi01G019700 vs. TrEMBL
Match: V4T1U9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.7e-67
Identity = 150/196 (76.53%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 5   KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDI 64
           +LDAVIEAEK AAR+L+RQK+KDRALLALKKKKAQEELLKQVD WLINVEQQL    +DI
Sbjct: 13  QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQL----ADI 72

Query: 65  ELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSEE 124
           ELASKQK+VFESLK+G NAIKAIQSEIN++DVQ+LMDDT EAKAYQDEINAILGEKLS E
Sbjct: 73  ELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE 132

Query: 125 DEEQILAEFESLEAQLTVQDLPEVPTS--EENAEKLDLPDVPSKKPVAADAIEEDAEIVS 184
           DEE+ILAEF++LEAQL VQ++PEVPT    E  EKLDLP+VP+K PVA+  + +DAEI  
Sbjct: 133 DEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAP 192

Query: 185 SDAPTKRRVMEEPLAA 199
           ++A TKRRVMEEPL A
Sbjct: 193 AEASTKRRVMEEPLPA 204

[Close]

BLAST of Lsi01G019700 vs. TrEMBL
Match: A0A0D2THX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G036800 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.2e-67
Identity = 152/196 (77.55%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++L+AVIEAEK AAR+L+R+K+KDRALLALKKKKAQEELLKQVD WLINVEQQL    +D
Sbjct: 33  QQLEAVIEAEKQAARDLIREKRKDRALLALKKKKAQEELLKQVDTWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VF+SLKAGNNAIKAIQSEINIDDVQ+LMDDT EAKAYQDEINAILGEKLS 
Sbjct: 93  IELASKQKAVFDSLKAGNNAIKAIQSEINIDDVQKLMDDTEEAKAYQDEINAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSEEN-AEKLDLPDVPSKKPVAADAIEEDAEIVS 183
           EDEE+ILAEFE+LE Q+ VQD+PEVPT + +  EKLDLPDVP+KKP A+DA  +DAEI  
Sbjct: 153 EDEEEILAEFENLETQMAVQDMPEVPTKQRSEEEKLDLPDVPTKKPFASDAATDDAEI-- 212

Query: 184 SDAPTKRRVMEEPLAA 199
               TKRRVMEEPL A
Sbjct: 213 ---STKRRVMEEPLPA 219

[Close]

BLAST of Lsi01G019700 vs. TAIR10
Match: AT5G09260.1 (AT5G09260.1 vacuolar protein sorting-associated protein 20.2)

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-62
Identity = 136/198 (68.69%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++L+ VIEAEK AAR+L+R+K+KDRALLALKKK+ QEELLKQVD WLINVEQQL    +D
Sbjct: 33  QQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IEL SKQK+VFESLK GNNAIKAIQSE+N+DDVQ+LMDDTAEAKAYQDE++AILGEKLS 
Sbjct: 93  IELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSE---ENAEKLDLPDVPSKKPVAADAIEEDAEI 183
           EDEE+ILAEF++LE+ L V+D+PEVPT+E   E  EK+DLPDVP+K PVA+         
Sbjct: 153 EDEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPVAS--------- 212

Query: 184 VSSDAPTKRRVMEEPLAA 199
            +    TKR+V+EEPL A
Sbjct: 213 -NETTSTKRKVLEEPLEA 216

[Close]

BLAST of Lsi01G019700 vs. TAIR10
Match: AT5G63880.2 (AT5G63880.2 SNF7 family protein)

HSP 1 Score: 224.6 bits (571), Expect = 5.5e-59
Identity = 136/220 (61.82%), Postives = 168/220 (76.36%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +KL+ VIEAEK AAR+L+R+K+KDRALLAL+KK+ QEELLKQVD W+INVEQQL    +D
Sbjct: 33  QKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQL----TD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQD------------ 123
           IEL SKQK+VFESLK GN+AIKAIQSE+++DDVQ+LMDDTA+AKAYQD            
Sbjct: 93  IELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDCENLYNLFCRAF 152

Query: 124 ------------EINAILGEKLSEEDEEQILAEFESLEAQLTVQDLPEVPTSE-ENAEKL 183
                       E+NAILGEKLS EDEE ILAEF++LE+QL V ++PEVPT E E +EKL
Sbjct: 153 VFDDSIYISECQELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKESEESEKL 212

Query: 184 DLPDVPSKKPVAADAIEEDAEIVSSDAPTKRRVMEEPLAA 199
           DLPDVP+K PVA+     +AEI  +++ TK +V+EEPL A
Sbjct: 213 DLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 243

[Close]

BLAST of Lsi01G019700 vs. TAIR10
Match: AT2G19830.1 (AT2G19830.1 SNF7 family protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 51/178 (28.65%), Postives = 88/178 (49.44%), Query Frame = 1


Query: 13  EKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDIELASKQKS 72
           E   A+E  R K K  A+  LK+K+  E+ ++Q+  + + +  Q++     +E A     
Sbjct: 44  EVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIM----LEGAKATTE 103

Query: 73  VFESLKAGNNAIKAIQSEINIDDVQRLMDD----TAEAKAYQDEINAILGEKLSEEDEEQ 132
             ++L+ G +A+KA+Q   NIDDV + MD+    T   K  Q+ ++A  G   ++ DE++
Sbjct: 104 TVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG--ANDFDEDE 163

Query: 133 ILAEFESLE-AQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSSDA 186
           + AE + LE A+L  Q L  VP       K      P++ P       E+ E+ +  A
Sbjct: 164 LEAELDELEGAELEEQLLQPVPIHVPQGNK------PARAPAQKQPTAEEDELAALQA 209

[Close]

BLAST of Lsi01G019700 vs. TAIR10
Match: AT4G29160.1 (AT4G29160.1 SNF7 family protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-06
Identity = 55/190 (28.95%), Postives = 91/190 (47.89%), Query Frame = 1


Query: 12  AEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDIELASKQK 71
           AE   A+E  R K K  A+  LK+K+  E  ++Q+  + + +  Q++     +E A    
Sbjct: 42  AEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIM----LEGAKATT 101

Query: 72  SVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKL---SEEDEEQ 131
              ++L++G +A+KA+Q   NIDDV + MD+  E      +I   L   +   ++ DE++
Sbjct: 102 ETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDE 161

Query: 132 ILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSSDAPTK 191
           + AE + LE++     L +  T+         P +PS   V   A  + A  V    P K
Sbjct: 162 LAAELDELESEELESQLLQPATT--------APPLPS---VPVPAGRQPARPV----PQK 212

Query: 192 RRVMEEPLAA 199
           R   EE LAA
Sbjct: 222 RTAEEEELAA 212

[Close]

BLAST of Lsi01G019700 vs. NCBI nr
Match: gi|700199676|gb|KGN54834.1| (hypothetical protein Csa_4G526050 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 2.3e-83
Identity = 181/194 (93.30%), Postives = 185/194 (95.36%), Query Frame = 1


Query: 5   KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSDI 64
           KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVD WLINVEQQL    SDI
Sbjct: 7   KLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDTWLINVEQQL----SDI 66

Query: 65  ELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSEE 124
           ELASKQK+VFESLKAGNNAIKAIQSEINIDDVQ+LMDDTAEAKAYQDEINAILGEKLSEE
Sbjct: 67  ELASKQKAVFESLKAGNNAIKAIQSEINIDDVQKLMDDTAEAKAYQDEINAILGEKLSEE 126

Query: 125 DEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSSD 184
           DEEQILAEFESLEAQLTV DLPEVPTSEE  EKLDLP+VPSKKPVAADAIEEDAE +SSD
Sbjct: 127 DEEQILAEFESLEAQLTVDDLPEVPTSEEQEEKLDLPEVPSKKPVAADAIEEDAETISSD 186

Query: 185 APTKRRVMEEPLAA 199
           APTKRRVMEEPLAA
Sbjct: 187 APTKRRVMEEPLAA 196

[Close]

BLAST of Lsi01G019700 vs. NCBI nr
Match: gi|778695034|ref|XP_011653914.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 180/195 (92.31%), Postives = 186/195 (95.38%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++LDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVD WLINVEQQL    SD
Sbjct: 33  QQLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDTWLINVEQQL----SD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLKAGNNAIKAIQSEINIDDVQ+LMDDTAEAKAYQDEINAILGEKLSE
Sbjct: 93  IELASKQKAVFESLKAGNNAIKAIQSEINIDDVQKLMDDTAEAKAYQDEINAILGEKLSE 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSS 183
           EDEEQILAEFESLEAQLTV DLPEVPTSEE  EKLDLP+VPSKKPVAADAIEEDAE +SS
Sbjct: 153 EDEEQILAEFESLEAQLTVDDLPEVPTSEEQEEKLDLPEVPSKKPVAADAIEEDAETISS 212

Query: 184 DAPTKRRVMEEPLAA 199
           DAPTKRRVMEEPLAA
Sbjct: 213 DAPTKRRVMEEPLAA 223

[Close]

BLAST of Lsi01G019700 vs. NCBI nr
Match: gi|659083085|ref|XP_008442177.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Cucumis melo])

HSP 1 Score: 310.5 bits (794), Expect = 2.2e-81
Identity = 179/195 (91.79%), Postives = 185/195 (94.87%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++LDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLK VDAWLINVEQQL    SD
Sbjct: 33  QQLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKHVDAWLINVEQQL----SD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLKAGNNAIKAIQSEINIDDVQ+LMDDTAEAKAYQDEINAILGEKLSE
Sbjct: 93  IELASKQKAVFESLKAGNNAIKAIQSEINIDDVQKLMDDTAEAKAYQDEINAILGEKLSE 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSS 183
           EDEEQILAEFESLEAQLTV+DLPEVPTSEE  EKLDLP+VPSKKPVAADAIEEDAE VSS
Sbjct: 153 EDEEQILAEFESLEAQLTVEDLPEVPTSEEKEEKLDLPEVPSKKPVAADAIEEDAETVSS 212

Query: 184 DAPTKRRVMEEPLAA 199
           DA TKRRVME PLAA
Sbjct: 213 DASTKRRVMEGPLAA 223

[Close]

BLAST of Lsi01G019700 vs. NCBI nr
Match: gi|697163531|ref|XP_009590586.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Nicotiana tomentosiformis])

HSP 1 Score: 264.2 bits (674), Expect = 1.8e-67
Identity = 148/195 (75.90%), Postives = 171/195 (87.69%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           ++LDAVIEAEK AAR+L+R+KKKDRALLALKKKK QEELLKQVD WLINVEQQL    +D
Sbjct: 33  QQLDAVIEAEKQAARDLLREKKKDRALLALKKKKVQEELLKQVDVWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLK GNNAIKAIQ EIN++DVQ+LMDDTAEAKAYQDEINAILGEKLS 
Sbjct: 93  IELASKQKAVFESLKTGNNAIKAIQCEINLEDVQKLMDDTAEAKAYQDEINAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPTSEENAEKLDLPDVPSKKPVAADAIEEDAEIVSS 183
           EDE+++LAEFE+LE+QLTVQDLPEVP++E   EKLDLPDVP+K PV ADA+ ED E  S+
Sbjct: 153 EDEDEVLAEFENLESQLTVQDLPEVPSAENVEEKLDLPDVPTKAPVIADAVTEDGEDTSA 212

Query: 184 DAPTKRRVMEEPLAA 199
               +++VMEEPL A
Sbjct: 213 GVTVRKKVMEEPLPA 223

[Close]

BLAST of Lsi01G019700 vs. NCBI nr
Match: gi|802551128|ref|XP_012064631.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas])

HSP 1 Score: 263.5 bits (672), Expect = 3.1e-67
Identity = 150/197 (76.14%), Postives = 175/197 (88.83%), Query Frame = 1


Query: 4   RKLDAVIEAEKNAARELVRQKKKDRALLALKKKKAQEELLKQVDAWLINVEQQLLAQLSD 63
           +KL+ VIEAEKNAAR+L+RQK+KDRALLALKKKK QEELLKQVD WLINVEQQL    +D
Sbjct: 33  QKLEEVIEAEKNAARDLIRQKRKDRALLALKKKKTQEELLKQVDTWLINVEQQL----AD 92

Query: 64  IELASKQKSVFESLKAGNNAIKAIQSEINIDDVQRLMDDTAEAKAYQDEINAILGEKLSE 123
           IELASKQK+VFESLKAGN+A+KAIQSEIN+DDVQ+LMDD+AEAKAYQDEINAILGEKLS 
Sbjct: 93  IELASKQKAVFESLKAGNDAVKAIQSEINLDDVQKLMDDSAEAKAYQDEINAILGEKLSA 152

Query: 124 EDEEQILAEFESLEAQLTVQDLPEVPT--SEENAEKLDLPDVPSKKPVAADAIEEDAEIV 183
           EDEE+ILAEFE+LE Q+T++D+P VPT  S+E+ EKLDLPDVP+K PVA DA++EDAE+ 
Sbjct: 153 EDEEEILAEFENLETQITIEDMPTVPTMPSKEHEEKLDLPDVPTKPPVALDAVKEDAEV- 212

Query: 184 SSDAPTKRRVMEEPLAA 199
                TKR+VMEEPL A
Sbjct: 213 ----STKRKVMEEPLPA 220

The following BLAST results are available for this feature:

BLAST of Lsi01G019700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP201_ARATH	8.6e-62	69.39	Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana...	[more]
VP202_ARATH	5.6e-61	68.69	Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana...	[more]
CHMP6_DICDI	3.7e-20	42.50	Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 ...	[more]
CHMP6_DANRE	1.1e-19	36.14	Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3	[more]
CHMP6_CHICK	3.8e-17	34.91	Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3	[more]

BLAST of Lsi01G019700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1A1_CUCSA	1.6e-83	93.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526050 PE=3 SV=1	[more]
A0A067LAQ8_JATCU	2.1e-67	76.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22917 PE=3 SV=1	[more]
V4T722_9ROSI	4.7e-67	76.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1	[more]
V4T1U9_9ROSI	4.7e-67	76.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1	[more]
A0A0D2THX6_GOSRA	6.2e-67	77.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G036800 PE=3 SV=1	[more]

BLAST of Lsi01G019700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09260.1	3.1e-62	68.69	vacuolar protein sorting-associated protein 20.2	[more]
AT5G63880.2	5.5e-59	61.82	SNF7 family protein	[more]
AT2G19830.1	1.4e-06	28.65	SNF7 family protein	[more]
AT4G29160.1	5.4e-06	28.95	SNF7 family protein	[more]

BLAST of Lsi01G019700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199676\|gb\|KGN54834.1\|	2.3e-83	93.30	hypothetical protein Csa_4G526050 [Cucumis sativus]	[more]
gi\|778695034\|ref\|XP_011653914.1\|	6.8e-83	92.31	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Cucumis sat...	[more]
gi\|659083085\|ref\|XP_008442177.1\|	2.2e-81	91.79	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Cucumi...	[more]
gi\|697163531\|ref\|XP_009590586.1\|	1.8e-67	75.90	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Nicoti...	[more]
gi\|802551128\|ref\|XP_012064631.1\|	3.1e-67	76.14	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatrop...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007034	vacuolar transport

Vocabulary: **INTERPRO**
Term	Definition
IPR005024	Snf7_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019700.1	Lsi01G019700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 4..167 score: 1.9
None	No IPR available	unknown	Coil	Coil	coord: 21..41 scor
None	No IPR available	PANTHER	PTHR22761	SNF7 - RELATED	coord: 4..180 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019700	Csa4G526050	Cucumber (Chinese Long) v2	culsiB259
Lsi01G019700	CSPI04G20500	Wild cucumber (PI 183967)	cpilsiB258
Lsi01G019700	Cucsa.357660	Cucumber (Gy14) v1	cgylsiB575
Lsi01G019700	CmaCh07G012750	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019700	CmoCh07G013140	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019700	CmoCh03G001400	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G019700	Cla011622	Watermelon (97103) v1	lsiwmB146
Lsi01G019700	MELO3C008970	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019700	ClCG04G001580	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019700	MELO3C008970.2	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019700	Cla97C04G069520	Watermelon (97103) v2	lsiwmbB133
Lsi01G019700	Cp4.1LG19g00980	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019700	CsGy4G019320	Cucumber (Gy14) v2	cgyblsiB243
Lsi01G019700	Carg12701	Silver-seed gourd	carlsiB259
Lsi01G019700	CsaV3_4G030940	Cucumber (Chinese Long) v3	cuclsiB279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019700	Melon (DHL92) v3.6.1	lsimedB169
Lsi01G019700	Silver-seed gourd	carlsiB260
Lsi01G019700	Watermelon (97103) v2	lsiwmbB136
Lsi01G019700	Wax gourd	lsiwgoB173
Lsi01G019700	Wild cucumber (PI 183967)	cpilsiB250
Lsi01G019700	Cucumber (Chinese Long) v2	culsiB250