Lsi01G019240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	zinc ion binding
Location	chr01 : 23930535 .. 23933737 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTGACATCCTTTTTCTTGGGCCATTTTCAACGCCAATTGCTGTGGATTTTCGCTTAGCTTTCTTCGTCTACAAGGTGTCTCTCTCTCTCTCTCAAAACTATTGCACATTCAAAACTATAAATTCCAGGTTAGTCTCTTAATCCTCCAATCCAGATGATGATTGTTCCTCTAATTGTACAACAATACTTGCAACACTTCAAATTGATCTGCTTCTCCGCTCTGCAACTCTCTTAGTTCTTCTGGGTACTGATTAGATAGATGATTATTTTAAACTTGCCAATTGATTTCGGCTAAAGGGTTGAGATTTCTTGATCCAATTTCTTCATGGGTTTTGTTCTGGAGACATATATTGGTTCTCTTTGCAAAGATTTGGGGTTATTTTTTTTCTGTTGTTTACATTCAGTGCGATTAATCCTCTGGTTCCCCTAAAATTGCAGAACAATCGTCTATCTAGCTGCTTGAACTTGCTTTTATTCATATGGAGTTTTTTAGCACTCTTAGTTTTGTTTTCTTGCTGTAGGGCCAATTTTTGCACCTCTTTTCTCCTATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTAGTACTGACTTTATATTCTCTTTTACTTTACAAGTAACTGAGTTTTTAGTTTTGTGTTTTATATTCTTGAATTTTAATTGTAGTCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGTGATTCTTTCTTTCTCTACTGTTTGTCAAAACCTATTCTGTTTTTGGTTGTTTGGTTTGGTTGGTTGCCCAAATGGTGTGAATTACTTCAAACCTTCTTCAATTGGAAGATCTATTTCACATTTAGCATTCCAGTTCAAAATGGCAGGGAAGAACTTTTCTCATATGAACTGATTAAGGTTGAGTTTGAGATTGACTTTTGGGAGGGTGAAAATGGTTTTTGCCATTAACAACACTTTTCAAATTTTCATAGTAATACAGAAATGTTTAGGAAATTTTAAAATGTGCTTTAAAATAGTTAAGTGTTTTAGAACAAGCACTTAATTAGTGTTTTTCTTTTCCCCAAAAGTTCTTATGGAAGAAGCGTTTTCACTCAAAAGCCCTTTTTCAAGTCATTCCAAATTCAACCTAGAGAAAATTTCAGCTTGTATATATTATTCAAGAAAATAACACAAGGAAAATAACATTTTTTTGGAGAGGCACTACAGATCCTAATCATTCATTAGTGTCTGAGTTGGAGTGTGTGTGTCATTTAGTTAAATTGTTCACTTTGCCAATGCTGACCTATGACAATCTTTAAGAATTGTATTATGGGACATTATTTGGTCATTTGGATTGCTTATTCAATTTGCTCTGCCTTTTTCTGCTCTGATATATGCTGACCGCCTTCCATTCTTTCTTTTTCTTAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCAGTGCATGTACCCTTCTTAACCGGGTAAGTTTTCATTGCTGTTTTTTCTTCATAAGGTTTTGGTTAAATTACAAGTTTGTTCCTTGAGTTCTTAAGATTAAGTCTCTTTAGTTCTTCAACTTTCAAATTGTCTATTTGATTATTGTGAAGTTTTGAATTGTTGTCTAAACTTGTAATTTTATATCTAAGATTTGAAAATTGATGCACATATGATGTGTGGACGTTATGGTATCCATAGGTATAAAGGCAGCAGCTAGGAGTGATAGATAGAGATAGTCAAGGGAATCTCTTTTGTAGCATGTCATACATGTTGATACAATGCTAAGTTCTCAAATAAAATATTTAACTTCTTCTGGATATAGAGCCTTCCACAATTGTTGATAGAAACAAGTATTAGTGTAAACAAGTTTAGAGATCTAGTAAACACACGTTTGAAAGTTCAAAGTTGTTGGATTTCCTTATATCTTTTGTAATATTGATTGTGTATTTGATAGGAATGCTATTGGAGTATTATAAGGGTGTACGAGTCATTACTCATTAGATAGGAGAGTTTGTTATGAAATTTGGTTAGAAATAGAGGTTAAGGGAATGAAGAAGGCAAGCATTGTTTTGGAAAAGGAATTAGAGCTTGAGAGTCTCTTAAGATTGGAAGGGTCCAAGTACCTCAAATACTTGATTTATATTGTAATTCTATTATCGTTTATCTTTCAATATATTTAGGCTCTATCAGTATTCTGTAGATATTTATTATTTCTACTTGTAACATTTATTTTCTTATTGGTTGATGGTCTTTATTCTATATAAGAGGACCTTATATTTGTTTTCGTAAGAAAAATACAACAATATGATTATTCTTCCCTAAATTTGAGTAAGGTTATACGGTTTAACTAAGCATATATTAAAACTTGAATTGCAGCCATTGGCTCTGATTTGTGAAGCTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA

mRNA sequence

CCGTGACATCCTTTTTCTTGGGCCATTTTCAACGCCAATTGCTGTGGATTTTCGCTTAGCTTTCTTCGTCTACAAGGTGTCTCTCTCTCTCTCTCAAAACTATTGCACATTCAAAACTATAAATTCCAGGTTAGTCTCTTAATCCTCCAATCCAGATGATGATTGTTCCTCTAATTGTACAACAATACTTGCAACACTTCAAATTGATCTGCTTCTCCGCTCTGCAACTCTCTTAGTTCTTCTGGGGCCAATTTTTGCACCTCTTTTCTCCTATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTATCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCACTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA

Coding sequence (CDS)

ATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTATCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCACTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA

Protein sequence

MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGGPSGPKRLGGDSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVISQIPSAASFPTHQETMDDLENWQCTCGNHKNKINTKTWACKFCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT

Homology

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BLAST of Lsi01G019240 vs. Swiss-Prot
Match: WSS1_YEAST (DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27
Identity = 79/213 (37.09%), Postives = 121/213 (56.81%), Query Frame = 1


Query: 17  KIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRP 76
           K  ++DA  ++++IA +V  +M++  +KV  L EFYP +  L+G+N+  G +I LR+R  
Sbjct: 38  KPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCS 97

Query: 77  NNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITGTGQGFDL 136
            +E+ F P E I+ TMLHEL H + GPH+  FY+ LDEL      +  +G+  T  G   
Sbjct: 98  TDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLG--- 157

Query: 137 RGRRLGG----ISHQPPLSSLRQTTLTAAENRARGGPSGPKRLGGDSNMKAVLSPIQAAA 196
            G+RLGG     S++ P++ +  T       R +G   G     G S++    SP + AA
Sbjct: 158 NGQRLGGRANLRSNRYPMTGI-STNTGIVRKRGKGVKLGSLHPEGISSIDRGNSPRELAA 217

Query: 197 MAAERRLKDDLWCGSKSLENNSDR--AKNMTSS 224
            AAERR +DD WCG    +NN D+  + N++SS
Sbjct: 218 FAAERRYRDDRWCG--ETKNNKDQIISDNISSS 244

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BLAST of Lsi01G019240 vs. Swiss-Prot
Match: YQ77_SCHPO (Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 1


Query: 20  EDDARKVLEKIAKQ--VQPIMRKRRWKVETLSEFYP-----DNPGLMGVNIGGGQEIKLR 79
           +D A + LE++     ++ IM   RW V  LSE  P      +   +G+N   G  I+LR
Sbjct: 122 KDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELR 181

Query: 80  IRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITGT 131
           +R    +  F  Y+ +  T++HEL H VHG H++ F+ L  +L KE +     G  G+
Sbjct: 182 LRTDRYD-GFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGS 238

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BLAST of Lsi01G019240 vs. TrEMBL
Match: M5WS74_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008486mg PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 2.2e-119
Identity = 216/334 (64.67%), Postives = 248/334 (74.25%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR++LEK+AKQVQPIMRK  WKV  LSEF P NP L G
Sbjct: 1   MDLNDLNKVWEIKPLKKIGEEDAREILEKVAKQVQPIMRKHNWKVRILSEFCPANPALQG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +N+GGG E+KLR+RRPNNEWDF+PYEQILDTMLHELCH  +GPHNADFY LLDE+R+ECE
Sbjct: 61  LNVGGGAEVKLRLRRPNNEWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGT QGFDL G+RLGG S QPPLSS+RQT L AAENRAR G   PSGP+RLGG
Sbjct: 121 ELMAKGITGTAQGFDLPGKRLGGFSRQPPLSSIRQTALAAAENRARRGALLPSGPRRLGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVI 240
           DSN+KA LSPIQAAAMAAERRL DDLWCGSKSLE   +    +  + G SR + AFT V 
Sbjct: 181 DSNIKAALSPIQAAAMAAERRLHDDLWCGSKSLEGGIE----IQGNVGTSRRTEAFT-VT 240

Query: 241 SQIPSAASFPTH--QETMDDLENWQC---------------TCGNHKNKINTKTWACKFC 300
           + I +  S  +   Q  +DD   W+C                CG  K  +  K W+CKFC
Sbjct: 241 NGISTQTSIESESGQGKIDDQAKWKCNMCTLLNELLALRCSACGTLKEDVKFKVWSCKFC 300

Query: 301 TLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           TL N  + +RC ACGEWRYS GPP+S   PY+GT
Sbjct: 301 TLDNRVELDRCSACGEWRYSSGPPVSNRGPYVGT 329

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BLAST of Lsi01G019240 vs. TrEMBL
Match: A0A059BYY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03997 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 5.0e-119
Identity = 220/336 (65.48%), Postives = 249/336 (74.11%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR+VLEK+AKQVQPIMRKR+WKVE LSEF P NP L+G
Sbjct: 1   MDLNDLNKVWEIKPLKKIGEEDAREVLEKVAKQVQPIMRKRKWKVEILSEFCPPNPSLLG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG EIKLR+RRPNNEWDFFPYEQILDTMLHELCHI +GPHNADFY+LLD++RKECE
Sbjct: 61  LNIGGGAEIKLRLRRPNNEWDFFPYEQILDTMLHELCHIEYGPHNADFYNLLDKIRKECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTGQGFDL GRRLGG S QPP SSL QT L AAENRAR G   PSGP+R+GG
Sbjct: 121 ELMAKGITGTGQGFDLPGRRLGGFSRQPPPSSLHQTVLAAAENRARRGALLPSGPRRIGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPV- 240
           DS+++  LSPIQAAAMAAERRL DDLWCGSKS E        +  S      S A T   
Sbjct: 181 DSDIRNALSPIQAAAMAAERRLHDDLWCGSKSAEVQDGFQGRVGPSLELPEKSKASTSFA 240

Query: 241 -ISQIPSAASFPTHQETMDDLENWQCT---------------CGNHKNKI--NTKTWACK 300
            IS   S  +F +  E +DD   WQC                CG+ ++     +  W+CK
Sbjct: 241 GISATTSPVNFTSSLEAVDDGAKWQCNTCTLLNQPLALSCEACGSQRHIAIATSNRWSCK 300

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL NS   +RCLACGEWRYSYGPP S+  PY+GT
Sbjct: 301 FCTLDNSVKQDRCLACGEWRYSYGPPASSRGPYVGT 336

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BLAST of Lsi01G019240 vs. TrEMBL
Match: A0A059BXA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03997 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 5.0e-119
Identity = 220/336 (65.48%), Postives = 249/336 (74.11%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR+VLEK+AKQVQPIMRKR+WKVE LSEF P NP L+G
Sbjct: 50  MDLNDLNKVWEIKPLKKIGEEDAREVLEKVAKQVQPIMRKRKWKVEILSEFCPPNPSLLG 109

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG EIKLR+RRPNNEWDFFPYEQILDTMLHELCHI +GPHNADFY+LLD++RKECE
Sbjct: 110 LNIGGGAEIKLRLRRPNNEWDFFPYEQILDTMLHELCHIEYGPHNADFYNLLDKIRKECE 169

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTGQGFDL GRRLGG S QPP SSL QT L AAENRAR G   PSGP+R+GG
Sbjct: 170 ELMAKGITGTGQGFDLPGRRLGGFSRQPPPSSLHQTVLAAAENRARRGALLPSGPRRIGG 229

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPV- 240
           DS+++  LSPIQAAAMAAERRL DDLWCGSKS E        +  S      S A T   
Sbjct: 230 DSDIRNALSPIQAAAMAAERRLHDDLWCGSKSAEVQDGFQGRVGPSLELPEKSKASTSFA 289

Query: 241 -ISQIPSAASFPTHQETMDDLENWQCT---------------CGNHKNKI--NTKTWACK 300
            IS   S  +F +  E +DD   WQC                CG+ ++     +  W+CK
Sbjct: 290 GISATTSPVNFTSSLEAVDDGAKWQCNTCTLLNQPLALSCEACGSQRHIAIATSNRWSCK 349

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL NS   +RCLACGEWRYSYGPP S+  PY+GT
Sbjct: 350 FCTLDNSVKQDRCLACGEWRYSYGPPASSRGPYVGT 385

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BLAST of Lsi01G019240 vs. TrEMBL
Match: A0A067DRJ7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019774mg PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118
Identity = 218/324 (67.28%), Postives = 253/324 (78.09%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWEVK LKKIGEDDAR++LEK+AKQVQPIMRK +WKV  LSEF P NP L+G
Sbjct: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG E+KLR+RRPN EWDFFPYEQILDTMLHELCH  +GPHNADFY L DE+RKEC+
Sbjct: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTG+GFDL GRRLGG S QPPLS LRQ+ L AAENRAR G   PSGP R+GG
Sbjct: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVI 240
           DS++KA LSPIQAAAMAAERRL DD+WCGSKSL ++ D  +++ SST  S +S   +   
Sbjct: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSN 240

Query: 241 SQIPSAASF--PTHQETMDDLENWQ---CTCGNHKNKI--NTKTWACKFCTLSNSTDAER 300
           ++    +S    + Q+ +D  + WQ   CT  N +NK   N K W+CKFCTL NS+ +ER
Sbjct: 241 NRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSER 300

Query: 301 CLACGEWRYSYGPPISTSAPYIGT 315
           CLACGEWRYS GPPIST  PY GT
Sbjct: 301 CLACGEWRYSNGPPISTPGPYPGT 324

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BLAST of Lsi01G019240 vs. TrEMBL
Match: A0A067DFN0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019774mg PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 4.2e-118
Identity = 218/336 (64.88%), Postives = 253/336 (75.30%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWEVK LKKIGEDDAR++LEK+AKQVQPIMRK +WKV  LSEF P NP L+G
Sbjct: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG E+KLR+RRPN EWDFFPYEQILDTMLHELCH  +GPHNADFY L DE+RKEC+
Sbjct: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTG+GFDL GRRLGG S QPPLS LRQ+ L AAENRAR G   PSGP R+GG
Sbjct: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVI 240
           DS++KA LSPIQAAAMAAERRL DD+WCGSKSL ++ D  +++ SST  S +S   +   
Sbjct: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSN 240

Query: 241 SQIPSAASFP--THQETMDDLENWQCT---------------CGNHKNKI--NTKTWACK 300
           ++    +S    + Q+ +D  + WQC                CG  +NK   N K W+CK
Sbjct: 241 NRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCK 300

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL NS+ +ERCLACGEWRYS GPPIST  PY GT
Sbjct: 301 FCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT 336

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BLAST of Lsi01G019240 vs. TAIR10
Match: AT1G55915.1 (AT1G55915.1 zinc ion binding)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-80
Identity = 161/274 (58.76%), Postives = 197/274 (71.90%), Query Frame = 1


Query: 2   DLNDLNKVWEVKPLK-KIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 61
           +L DLNKVWE+K LK K  ED+ARK+LEK+A QVQPIM +R+W+V+ LSEF P NP L+G
Sbjct: 5   NLEDLNKVWEIKALKRKPREDEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLG 64

Query: 62  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 121
           VN+  G ++KLR+RR N++ DF  Y +ILDTMLHELCH  HGPHNA FY L DELRKECE
Sbjct: 65  VNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELCHNAHGPHNASFYKLWDELRKECE 124

Query: 122 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 181
           ELM KGITGTGQGFD+ G+RLGG+S QP LS LR T  TAAE R R G   PSGP+RLGG
Sbjct: 125 ELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATAATAAEKRVRAGTLLPSGPQRLGG 184

Query: 182 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSL------ENNSDRAK-------NMTSST 241
           DS++ + LSPIQAAAMAAERRL DD+WCGS+S       EN+SD  K         TS  
Sbjct: 185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDTYKEPVSIRETCTSVN 244

Query: 242 GPS-RTSNAFTPVISQIPSAASFPTHQETMDDLE 258
           G S +  N+++   S  PS+    +HQ+  D ++
Sbjct: 245 GKSVKRCNSWSNAHSCPPSS----SHQQGSDVID 274

[Close]

BLAST of Lsi01G019240 vs. NCBI nr
Match: gi|659083219|ref|XP_008442239.1| (PREDICTED: LOW QUALITY PROTEIN: DNA damage response protein WSS1-like [Cucumis melo])

HSP 1 Score: 592.0 bits (1525), Expect = 5.9e-166
Identity = 289/328 (88.11%), Postives = 296/328 (90.24%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVW+V PLKKIGEDD+RKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG
Sbjct: 1   MDLNDLNKVWQVNPLKKIGEDDSRKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE
Sbjct: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGGPSGPKRLGGDSN 180
           ELM KGITGTGQGFDLRGRRLGGISHQPPLSSLRQT L AAENRARGGPSGPKRLGG SN
Sbjct: 121 ELMSKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTALAAAENRARGGPSGPKRLGGXSN 180

Query: 181 MKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVISQI 240
           MKAVLSPIQAAAMAAERRLKDDLWCGSKS ENNSDRAKNM SSTG SR SNAFTPVISQI
Sbjct: 181 MKAVLSPIQAAAMAAERRLKDDLWCGSKSWENNSDRAKNMGSSTGSSRASNAFTPVISQI 240

Query: 241 PSAASFPTHQETMDDLENWQCT---------------CGNHKNKINTKTWACKFCTLSNS 300
           PSA S PTHQE  DDLENWQC+               CGNHKNK+NT+TWAC FCTLSNS
Sbjct: 241 PSATSIPTHQEATDDLENWQCSTCTLLNRSLALICEACGNHKNKMNTRTWACNFCTLSNS 300

Query: 301 TDAERCLACGEWRYSYGPPISTSAPYIG 314
           +DAE+CLACGEWRYSYGP ISTS P IG
Sbjct: 301 SDAEKCLACGEWRYSYGPSISTSPPDIG 328

[Close]

BLAST of Lsi01G019240 vs. NCBI nr
Match: gi|595923791|ref|XP_007214857.1| (hypothetical protein PRUPE_ppa008486mg [Prunus persica])

HSP 1 Score: 436.8 bits (1122), Expect = 3.2e-119
Identity = 216/334 (64.67%), Postives = 248/334 (74.25%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR++LEK+AKQVQPIMRK  WKV  LSEF P NP L G
Sbjct: 1   MDLNDLNKVWEIKPLKKIGEEDAREILEKVAKQVQPIMRKHNWKVRILSEFCPANPALQG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +N+GGG E+KLR+RRPNNEWDF+PYEQILDTMLHELCH  +GPHNADFY LLDE+R+ECE
Sbjct: 61  LNVGGGAEVKLRLRRPNNEWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGT QGFDL G+RLGG S QPPLSS+RQT L AAENRAR G   PSGP+RLGG
Sbjct: 121 ELMAKGITGTAQGFDLPGKRLGGFSRQPPLSSIRQTALAAAENRARRGALLPSGPRRLGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVI 240
           DSN+KA LSPIQAAAMAAERRL DDLWCGSKSLE   +    +  + G SR + AFT V 
Sbjct: 181 DSNIKAALSPIQAAAMAAERRLHDDLWCGSKSLEGGIE----IQGNVGTSRRTEAFT-VT 240

Query: 241 SQIPSAASFPTH--QETMDDLENWQC---------------TCGNHKNKINTKTWACKFC 300
           + I +  S  +   Q  +DD   W+C                CG  K  +  K W+CKFC
Sbjct: 241 NGISTQTSIESESGQGKIDDQAKWKCNMCTLLNELLALRCSACGTLKEDVKFKVWSCKFC 300

Query: 301 TLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           TL N  + +RC ACGEWRYS GPP+S   PY+GT
Sbjct: 301 TLDNRVELDRCSACGEWRYSSGPPVSNRGPYVGT 329

[Close]

BLAST of Lsi01G019240 vs. NCBI nr
Match: gi|702381252|ref|XP_010063629.1| (PREDICTED: DNA-dependent metalloprotease WSS1-like isoform X1 [Eucalyptus grandis])

HSP 1 Score: 435.6 bits (1119), Expect = 7.1e-119
Identity = 220/336 (65.48%), Postives = 249/336 (74.11%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR+VLEK+AKQVQPIMRKR+WKVE LSEF P NP L+G
Sbjct: 50  MDLNDLNKVWEIKPLKKIGEEDAREVLEKVAKQVQPIMRKRKWKVEILSEFCPPNPSLLG 109

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG EIKLR+RRPNNEWDFFPYEQILDTMLHELCHI +GPHNADFY+LLD++RKECE
Sbjct: 110 LNIGGGAEIKLRLRRPNNEWDFFPYEQILDTMLHELCHIEYGPHNADFYNLLDKIRKECE 169

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTGQGFDL GRRLGG S QPP SSL QT L AAENRAR G   PSGP+R+GG
Sbjct: 170 ELMAKGITGTGQGFDLPGRRLGGFSRQPPPSSLHQTVLAAAENRARRGALLPSGPRRIGG 229

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPV- 240
           DS+++  LSPIQAAAMAAERRL DDLWCGSKS E        +  S      S A T   
Sbjct: 230 DSDIRNALSPIQAAAMAAERRLHDDLWCGSKSAEVQDGFQGRVGPSLELPEKSKASTSFA 289

Query: 241 -ISQIPSAASFPTHQETMDDLENWQCT---------------CGNHKNKI--NTKTWACK 300
            IS   S  +F +  E +DD   WQC                CG+ ++     +  W+CK
Sbjct: 290 GISATTSPVNFTSSLEAVDDGAKWQCNTCTLLNQPLALSCEACGSQRHIAIATSNRWSCK 349

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL NS   +RCLACGEWRYSYGPP S+  PY+GT
Sbjct: 350 FCTLDNSVKQDRCLACGEWRYSYGPPASSRGPYVGT 385

[Close]

BLAST of Lsi01G019240 vs. NCBI nr
Match: gi|470136114|ref|XP_004303846.1| (PREDICTED: DNA-dependent metalloprotease WSS1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 435.6 bits (1119), Expect = 7.1e-119
Identity = 220/336 (65.48%), Postives = 246/336 (73.21%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPL KIGE+DARK+LEKIAKQVQPIMRKR+WKV  LSEF P NP L G
Sbjct: 1   MDLNDLNKVWEIKPLNKIGEEDARKLLEKIAKQVQPIMRKRKWKVRVLSEFSPANPSLQG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG E+ LR+RRPNNEWDF+PYEQILDTMLHELCH  +GPHNADFY+LLDE+R+ECE
Sbjct: 61  LNIGGGAEVNLRLRRPNNEWDFYPYEQILDTMLHELCHNEYGPHNADFYNLLDEIRRECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTGQGFDL GRRLGG S QPP SSLRQT L AAE RA  G   PSGPKRLGG
Sbjct: 121 ELMGKGITGTGQGFDLPGRRLGGFSRQPPPSSLRQTALAAAEKRAHHGALLPSGPKRLGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVI 240
           DSN+KA LSPIQAAAMAAERRL DDLWCGSKSLE ++    N+    G S+  +AFT   
Sbjct: 181 DSNIKAALSPIQAAAMAAERRLHDDLWCGSKSLEGDT----NVQGHIGTSQRPHAFTVTN 240

Query: 241 SQIPSAASFPTH----QETMDDLENWQCT---------------CGNHKNKINTKTWACK 300
               S+   PT      E +DD   WQC+               C   ++    K W+CK
Sbjct: 241 G---SSTQNPTQPKPVAEKLDDQSKWQCSTCTLLNEELAMTCAACTTSRDNTKFKVWSCK 300

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL N    ERCLAC EWRYSYGPP+S   PY+GT
Sbjct: 301 FCTLENRVGVERCLACREWRYSYGPPVSNRGPYVGT 329

[Close]

BLAST of Lsi01G019240 vs. NCBI nr
Match: gi|702381260|ref|XP_010063630.1| (PREDICTED: DNA-dependent metalloprotease WSS1-like isoform X2 [Eucalyptus grandis])

HSP 1 Score: 435.6 bits (1119), Expect = 7.1e-119
Identity = 220/336 (65.48%), Postives = 249/336 (74.11%), Query Frame = 1


Query: 1   MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMG 60
           MDLNDLNKVWE+KPLKKIGE+DAR+VLEK+AKQVQPIMRKR+WKVE LSEF P NP L+G
Sbjct: 1   MDLNDLNKVWEIKPLKKIGEEDAREVLEKVAKQVQPIMRKRKWKVEILSEFCPPNPSLLG 60

Query: 61  VNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECE 120
           +NIGGG EIKLR+RRPNNEWDFFPYEQILDTMLHELCHI +GPHNADFY+LLD++RKECE
Sbjct: 61  LNIGGGAEIKLRLRRPNNEWDFFPYEQILDTMLHELCHIEYGPHNADFYNLLDKIRKECE 120

Query: 121 ELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGG---PSGPKRLGG 180
           ELM KGITGTGQGFDL GRRLGG S QPP SSL QT L AAENRAR G   PSGP+R+GG
Sbjct: 121 ELMAKGITGTGQGFDLPGRRLGGFSRQPPPSSLHQTVLAAAENRARRGALLPSGPRRIGG 180

Query: 181 DSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPV- 240
           DS+++  LSPIQAAAMAAERRL DDLWCGSKS E        +  S      S A T   
Sbjct: 181 DSDIRNALSPIQAAAMAAERRLHDDLWCGSKSAEVQDGFQGRVGPSLELPEKSKASTSFA 240

Query: 241 -ISQIPSAASFPTHQETMDDLENWQCT---------------CGNHKNKI--NTKTWACK 300
            IS   S  +F +  E +DD   WQC                CG+ ++     +  W+CK
Sbjct: 241 GISATTSPVNFTSSLEAVDDGAKWQCNTCTLLNQPLALSCEACGSQRHIAIATSNRWSCK 300

Query: 301 FCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT 315
           FCTL NS   +RCLACGEWRYSYGPP S+  PY+GT
Sbjct: 301 FCTLDNSVKQDRCLACGEWRYSYGPPASSRGPYVGT 336

The following BLAST results are available for this feature:

BLAST of Lsi01G019240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WSS1_YEAST	1.7e-27	37.09	DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 2045...	[more]
YQ77_SCHPO	2.1e-09	32.20	Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c OS=Schizosaccha...	[more]

BLAST of Lsi01G019240 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WS74_PRUPE	2.2e-119	64.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008486mg PE=4 SV=1	[more]
A0A059BYY2_EUCGR	5.0e-119	65.48	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03997 PE=4 SV=1	[more]
A0A059BXA9_EUCGR	5.0e-119	65.48	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03997 PE=4 SV=1	[more]
A0A067DRJ7_CITSI	1.9e-118	67.28	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019774mg PE=4 SV=1	[more]
A0A067DFN0_CITSI	4.2e-118	64.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019774mg PE=4 SV=1	[more]

BLAST of Lsi01G019240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55915.1	1.1e-80	58.76	zinc ion binding	[more]

BLAST of Lsi01G019240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083219\|ref\|XP_008442239.1\|	5.9e-166	88.11	PREDICTED: LOW QUALITY PROTEIN: DNA damage response protein WSS1-like [Cucumis m...	[more]
gi\|595923791\|ref\|XP_007214857.1\|	3.2e-119	64.67	hypothetical protein PRUPE_ppa008486mg [Prunus persica]	[more]
gi\|702381252\|ref\|XP_010063629.1\|	7.1e-119	65.48	PREDICTED: DNA-dependent metalloprotease WSS1-like isoform X1 [Eucalyptus grandi...	[more]
gi\|470136114\|ref\|XP_004303846.1\|	7.1e-119	65.48	PREDICTED: DNA-dependent metalloprotease WSS1-like [Fragaria vesca subsp. vesca]	[more]
gi\|702381260\|ref\|XP_010063630.1\|	7.1e-119	65.48	PREDICTED: DNA-dependent metalloprotease WSS1-like isoform X2 [Eucalyptus grandi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013536	WLM_dom
IPR001876	Znf_RanBP2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019240.1	Lsi01G019240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 275..294 scor
IPR001876	Zinc finger, RanBP2-type	PROFILE	PS50199	ZF_RANBP2_2	coord: 269..300 score: 8
IPR013536	WLM domain	PFAM	PF08325	WLM	coord: 8..200 score: 1.0
IPR013536	WLM domain	PROFILE	PS51397	WLM	coord: 1..200 score: 44
None	No IPR available	PANTHER	PTHR23153	UBX-RELATED	coord: 1..310 score: 6.8
None	No IPR available	PANTHER	PTHR23153:SF37	DNA DAMAGE RESPONSE PROTEIN WSS1	coord: 1..310 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019240	CmaCh03G000910	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G019240	CmoCh03G000970	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G019240	Cla008070	Watermelon (97103) v1	lsiwmB153
Lsi01G019240	MELO3C009035	Melon (DHL92) v3.5.1	lsimeB160
Lsi01G019240	ClCG04G000610	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019240	MELO3C009034.2	Melon (DHL92) v3.6.1	lsimedB169
Lsi01G019240	Cla97C04G068960	Watermelon (97103) v2	lsiwmbB133
Lsi01G019240	Cp4.1LG10g11880	Cucurbita pepo (Zucchini)	cpelsiB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019240	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019240	Melon (DHL92) v3.6.1	lsimedB161
Lsi01G019240	Silver-seed gourd	carlsiB259
Lsi01G019240	Silver-seed gourd	carlsiB260
Lsi01G019240	Cucumber (Chinese Long) v3	cuclsiB279
Lsi01G019240	Wax gourd	lsiwgoB173
Lsi01G019240	Wax gourd	lsiwgoB188
Lsi01G019240	Cucumber (Gy14) v1	cgylsiB575
Lsi01G019240	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019240	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019240	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019240	Wild cucumber (PI 183967)	cpilsiB258
Lsi01G019240	Cucumber (Chinese Long) v2	culsiB259
Lsi01G019240	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019240	Cucumber (Gy14) v2	cgyblsiB243