Lsi01G019030 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G019030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionwinged-helix DNA-binding transcription factor family protein
Locationchr01 : 22592252 .. 22592578 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTGGAGTGAGCAATAATAACAAAAATGATGAGAAGGGGTTGCCGGCGGCGGAGAGTGAGATCATAAGAAAGTCAACGCCGCCACCGTTTCTGGTGAAGACTTATACGGCAGTGGAGGATCCAGCGACGGACGAGGTGATATCGTGGAATGGTGACGGGACGGCGTTTGTAGTTTGGCAGACGGCGGAATTCGCTAAAGATGTATTGCCAAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGCTTTTCTTCTTCTTTACCTATTTTATTTAATTCATTACATTATTTATCTTAG

mRNA sequence

ATGGAGGCTGGAGTGAGCAATAATAACAAAAATGATGAGAAGGGGTTGCCGGCGGCGGAGAGTGAGATCATAAGAAAGTCAACGCCGCCACCGTTTCTGGTGAAGACTTATACGGCAGTGGAGGATCCAGCGACGGACGAGGTGATATCGTGGAATGGTGACGGGACGGCGTTTGTAGTTTGGCAGACGGCGGAATTCGCTAAAGATGTATTGCCAAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGCTTTTCTTCTTCTTTACCTATTTTATTTAATTCATTACATTATTTATCTTAG

Coding sequence (CDS)

ATGGAGGCTGGAGTGAGCAATAATAACAAAAATGATGAGAAGGGGTTGCCGGCGGCGGAGAGTGAGATCATAAGAAAGTCAACGCCGCCACCGTTTCTGGTGAAGACTTATACGGCAGTGGAGGATCCAGCGACGGACGAGGTGATATCGTGGAATGGTGACGGGACGGCGTTTGTAGTTTGGCAGACGGCGGAATTCGCTAAAGATGTATTGCCAAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGCTTTTCTTCTTCTTTACCTATTTTATTTAATTCATTACATTATTTATCTTAG

Protein sequence

MEAGVSNNNKNDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTYVRFSSSLPILFNSLHYLS
Homology
[Close]
BLAST of Lsi01G019030 vs. Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 58/89 (65.17%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 7  NNNKNDEKGLPAA-----ESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVW 66
          N+N NDE+ LP        +       PPPFLVKTY  VEDP TD VISWN  GT FVVW
Sbjct: 11 NDNVNDEERLPLEFMIGNSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVW 70

Query: 67 QTAEFAKDVLPKLFKHCNFSSFVRQLNTY 91
          Q AEFA+D+LP LFKHCNFSSFVRQLNTY
Sbjct: 71 QPAEFARDLLPTLFKHCNFSSFVRQLNTY 99

[Close]
BLAST of Lsi01G019030 vs. Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-23
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 18 AAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKH 77
          AAE+   ++S P PFL KTY  VEDPA D+VISWN DG+ FVVW+ AEFA+D+LPK FKH
Sbjct: 25 AAEALAGQRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKH 84

Query: 78 CNFSSFVRQLNTY 91
           NFSSFVRQLNTY
Sbjct: 85 NNFSSFVRQLNTY 97

[Close]
BLAST of Lsi01G019030 vs. Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 30 PPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNT 89
          PPFL KTY  VEDP+TDE ISWN  GTAFVVW+ AEFA+D+LPK FKH NFSSFVRQLNT
Sbjct: 9  PPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNT 68

Query: 90 Y 91
          Y
Sbjct: 69 Y 69

[Close]
BLAST of Lsi01G019030 vs. Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-22
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 17  PAAESEII-----RKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVL 76
           PAAE+  +     +++ P PFL KTY  V+DPA D+VISWN DG+ FVVW+ AEFA+D+L
Sbjct: 29  PAAEAAGVGVGQQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLL 88

Query: 77  PKLFKHCNFSSFVRQLNTY 91
           PK FKH NFSSFVRQLNTY
Sbjct: 89  PKYFKHNNFSSFVRQLNTY 107

[Close]
BLAST of Lsi01G019030 vs. Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-22
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 

Query: 25 RKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFV 84
          +++ P PFL+KTY  V+D ATD+VISWN  GT FVVW+TAEFAKD+LPK FKH NFSSFV
Sbjct: 3  QRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFV 62

Query: 85 RQLNTY 91
          RQLNTY
Sbjct: 63 RQLNTY 68

[Close]
BLAST of Lsi01G019030 vs. TrEMBL
Match: A0A0A0KYD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171490 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.4e-33
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 1 

Query: 1   MEAGVSNNN--KNDEKGLPA-----AESEI-IRKSTPPPFLVKTYTAVEDPATDEVISWN 60
           ME GVSNNN  +N+EK L +     AE+EI +RKSTP PFL+KTY  VEDPATD+VISWN
Sbjct: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61  GDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTYVRFSSSLPI 100
            DGTAFVVWQTAEFAKDVLPKLFKH NFSSFVRQLNTYVRF S LPI
Sbjct: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRF-SYLPI 106

[Close]
BLAST of Lsi01G019030 vs. TrEMBL
Match: A0A067K1D9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21103 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 6  SNNNKNDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAE 65
          +NN+ N+ K L   E + +RKSTPPPFL+KTY  VEDPATD V+SWN DGT F+VWQ AE
Sbjct: 7  NNNHNNNNKAL---EYQYVRKSTPPPFLLKTYMLVEDPATDHVVSWNDDGTGFIVWQPAE 66

Query: 66 FAKDVLPKLFKHCNFSSFVRQLNTY 91
          FA+D+LP LFKH NFSSFVRQLNTY
Sbjct: 67 FARDLLPTLFKHSNFSSFVRQLNTY 88

[Close]
BLAST of Lsi01G019030 vs. TrEMBL
Match: A0A059DIB7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02338 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-26
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 

Query: 11 NDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDV 70
          +++KGL     E +RKSTPPPFL+KTY  VEDPATD+VISWN DGTAFVVWQ AEFA+D+
Sbjct: 9  SEKKGLLL---EYVRKSTPPPFLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDL 68

Query: 71 LPKLFKHCNFSSFVRQLNTY 91
          LP LFKH NFSSFVRQLNTY
Sbjct: 69 LPTLFKHSNFSSFVRQLNTY 85

[Close]
BLAST of Lsi01G019030 vs. TrEMBL
Match: V4LQK3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017795mg PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-26
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 7   NNNKNDEK--------GLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAF 66
           N+N ND +        G P +  E+   + PPPFLVKTY  VEDP TDEVISWNGDGT F
Sbjct: 13  NDNINDVEKLPLEFMTGKPTSSVELQPPAIPPPFLVKTYKVVEDPTTDEVISWNGDGTGF 72

Query: 67  VVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTY 91
           VVWQ AEFA+D+LP LFKHCNFSSFVRQLNTY
Sbjct: 73  VVWQPAEFARDLLPTLFKHCNFSSFVRQLNTY 104

[Close]
BLAST of Lsi01G019030 vs. TrEMBL
Match: A0A0U3SRJ2_VITPS (Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-26
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 13 EKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLP 72
          EKGL     E +RKSTPPPFL+KTY  VEDPATD VISWN DGTAFVVWQ AEFA+D+LP
Sbjct: 8  EKGL----LEYVRKSTPPPFLLKTYMLVEDPATDGVISWNSDGTAFVVWQPAEFARDLLP 67

Query: 73 KLFKHCNFSSFVRQLNTY 91
           LFKH NFSSFVRQLNTY
Sbjct: 68 TLFKHSNFSSFVRQLNTY 81

[Close]
BLAST of Lsi01G019030 vs. TAIR10
Match: AT2G41690.1 (AT2G41690.1 heat shock transcription factor B3)

HSP 1 Score: 117.1 bits (292), Expect = 6.8e-27
Identity = 58/89 (65.17%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 7  NNNKNDEKGLPAA-----ESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVW 66
          N+N NDE+ LP        +       PPPFLVKTY  VEDP TD VISWN  GT FVVW
Sbjct: 11 NDNVNDEERLPLEFMIGNSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVW 70

Query: 67 QTAEFAKDVLPKLFKHCNFSSFVRQLNTY 91
          Q AEFA+D+LP LFKHCNFSSFVRQLNTY
Sbjct: 71 QPAEFARDLLPTLFKHCNFSSFVRQLNTY 99

[Close]
BLAST of Lsi01G019030 vs. TAIR10
Match: AT4G11660.1 (AT4G11660.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-23
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 25  RKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFV 84
           ++S P PFL KTY  VEDP  DE+ISWN DGT F+VW+ AEFA+D+LPK FKH NFSSFV
Sbjct: 53  QRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFV 112

Query: 85  RQLNTY 91
           RQLNTY
Sbjct: 113 RQLNTY 118

[Close]
BLAST of Lsi01G019030 vs. TAIR10
Match: AT4G36990.1 (AT4G36990.1 heat shock factor 4)

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 25 RKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFV 84
          ++S P PFL KTY  V+D +TD+V+SWN +GTAFVVW+TAEFAKD+LP+ FKH NFSSF+
Sbjct: 8  QRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFI 67

Query: 85 RQLNTY 91
          RQLNTY
Sbjct: 68 RQLNTY 73

[Close]
BLAST of Lsi01G019030 vs. TAIR10
Match: AT1G46264.1 (AT1G46264.1 heat shock transcription factor B4)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1 

Query: 26 KSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVR 85
          K+ P PFL KTY  V+DPATD V+SW  D T FVVW+  EFA+D+LP  FKH NFSSFVR
Sbjct: 29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVR 88

Query: 86 QLNTY 91
          QLNTY
Sbjct: 89 QLNTY 93

[Close]
BLAST of Lsi01G019030 vs. TAIR10
Match: AT5G62020.1 (AT5G62020.1 heat shock transcription factor B2A)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 25 RKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFV 84
          ++S P PFL KT+  VED + D+VISWN DG++F+VW   +FAKD+LPK FKH NFSSFV
Sbjct: 17 QRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFV 76

Query: 85 RQLNTY 91
          RQLNTY
Sbjct: 77 RQLNTY 82

[Close]
BLAST of Lsi01G019030 vs. NCBI nr
Match: gi|700198701|gb|KGN53859.1| (hypothetical protein Csa_4G171490 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 7.8e-33
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 1 

Query: 1   MEAGVSNNN--KNDEKGLPA-----AESEI-IRKSTPPPFLVKTYTAVEDPATDEVISWN 60
           ME GVSNNN  +N+EK L +     AE+EI +RKSTP PFL+KTY  VEDPATD+VISWN
Sbjct: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61  GDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTYVRFSSSLPI 100
            DGTAFVVWQTAEFAKDVLPKLFKH NFSSFVRQLNTYVRF S LPI
Sbjct: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRF-SYLPI 106

[Close]
BLAST of Lsi01G019030 vs. NCBI nr
Match: gi|449463360|ref|XP_004149402.1| (PREDICTED: heat stress transcription factor B-3 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 1 

Query: 1  MEAGVSNNN--KNDEKGLPA-----AESEI-IRKSTPPPFLVKTYTAVEDPATDEVISWN 60
          ME GVSNNN  +N+EK L +     AE+EI +RKSTP PFL+KTY  VEDPATD+VISWN
Sbjct: 1  MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61 GDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTY 91
           DGTAFVVWQTAEFAKDVLPKLFKH NFSSFVRQLNTY
Sbjct: 61 SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 98

[Close]
BLAST of Lsi01G019030 vs. NCBI nr
Match: gi|659121625|ref|XP_008460754.1| (PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-30
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 1 

Query: 1  MEAGVS--NNNKNDEKGLPA-----AESEI-IRKSTPPPFLVKTYTAVEDPATDEVISWN 60
          MEAGVS  NNN+N+EK L +     AESEI +RKST  PFL+KTY  VEDP TD+VISWN
Sbjct: 1  MEAGVSDNNNNRNEEKKLESWPPWKAESEIRMRKSTTAPFLMKTYRMVEDPGTDDVISWN 60

Query: 61 GDGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTY 91
           DGTAFVVWQTAEFAKD+LPKLFKH NFSSFVRQLNTY
Sbjct: 61 SDGTAFVVWQTAEFAKDILPKLFKHSNFSSFVRQLNTY 98

[Close]
BLAST of Lsi01G019030 vs. NCBI nr
Match: gi|802729186|ref|XP_012086190.1| (PREDICTED: heat stress transcription factor B-3 [Jatropha curcas])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 6  SNNNKNDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAE 65
          +NN+ N+ K L   E + +RKSTPPPFL+KTY  VEDPATD V+SWN DGT F+VWQ AE
Sbjct: 7  NNNHNNNNKAL---EYQYVRKSTPPPFLLKTYMLVEDPATDHVVSWNDDGTGFIVWQPAE 66

Query: 66 FAKDVLPKLFKHCNFSSFVRQLNTY 91
          FA+D+LP LFKH NFSSFVRQLNTY
Sbjct: 67 FARDLLPTLFKHSNFSSFVRQLNTY 88

[Close]
BLAST of Lsi01G019030 vs. NCBI nr
Match: gi|702247598|ref|XP_010056944.1| (PREDICTED: heat stress transcription factor B-3 [Eucalyptus grandis])

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-26
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 

Query: 11 NDEKGLPAAESEIIRKSTPPPFLVKTYTAVEDPATDEVISWNGDGTAFVVWQTAEFAKDV 70
          +++KGL     E +RKSTPPPFL+KTY  VEDPATD+VISWN DGTAFVVWQ AEFA+D+
Sbjct: 9  SEKKGLLL---EYVRKSTPPPFLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDL 68

Query: 71 LPKLFKHCNFSSFVRQLNTY 91
          LP LFKH NFSSFVRQLNTY
Sbjct: 69 LPTLFKHSNFSSFVRQLNTY 85

The following BLAST results are available for this feature:
BLAST of Lsi01G019030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HSFB3_ARATH1.2e-2565.17Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1[more]
HFB2C_ORYSJ3.3e-2369.86Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C ... [more]
HFB2A_ORYSJ1.2e-2278.69Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A ... [more]
HFB2B_ORYSJ2.1e-2263.29Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B ... [more]
HSF24_SOLPE3.6e-2272.73Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1[more]
BLAST of Lsi01G019030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYD7_CUCSA5.4e-3376.64Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171490 PE=3 SV=1[more]
A0A067K1D9_JATCU1.3e-2669.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21103 PE=3 SV=1[more]
A0A059DIB7_EUCGR3.8e-2675.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02338 PE=3 SV=1[more]
V4LQK3_EUTSA4.9e-2666.30Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017795mg PE=3 SV=1[more]
A0A0U3SRJ2_VITPS4.9e-2678.21Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1[more]
BLAST of Lsi01G019030 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41690.16.8e-2765.17 heat shock transcription factor B3[more]
AT4G11660.12.0e-2371.21 winged-helix DNA-binding transcription factor family protein[more]
AT4G36990.12.7e-2369.70 heat shock factor 4[more]
AT1G46264.11.5e-2167.69 heat shock transcription factor B4[more]
AT5G62020.13.3e-2165.15 heat shock transcription factor B2A[more]
BLAST of Lsi01G019030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198701|gb|KGN53859.1|7.8e-3376.64hypothetical protein Csa_4G171490 [Cucumis sativus][more]
gi|449463360|ref|XP_004149402.1|1.2e-3076.53PREDICTED: heat stress transcription factor B-3 [Cucumis sativus][more]
gi|659121625|ref|XP_008460754.1|2.8e-3075.51PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis me... [more]
gi|802729186|ref|XP_012086190.1|1.9e-2669.41PREDICTED: heat stress transcription factor B-3 [Jatropha curcas][more]
gi|702247598|ref|XP_010056944.1|5.4e-2675.00PREDICTED: heat stress transcription factor B-3 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991Winged helix-turn-helix DNA-binding domain
IPR000232HSF_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019030.1Lsi01G019030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000232Heat shock factor (HSF)-type, DNA-bindingPRINTSPR00056HSFDOMAINcoord: 70..82
score: 3.1E-13coord: 32..55
score: 3.1E-13coord: 83..95
score: 3.1
IPR000232Heat shock factor (HSF)-type, DNA-bindingPFAMPF00447HSF_DNA-bindcoord: 32..90
score: 8.4
IPR000232Heat shock factor (HSF)-type, DNA-bindingSMARTSM00415hsfneu3coord: 28..107
score: 7.6
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 25..90
score: 3.1
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 30..90
score: 2.18
IPR027725Heat shock transcription factor familyPANTHERPTHR10015HEAT SHOCK TRANSCRIPTION FACTORcoord: 27..90
score: 1.7
NoneNo IPR availablePANTHERPTHR10015:SF166HEAT STRESS TRANSCRIPTION FACTOR B-1coord: 27..90
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G019030Cucurbita maxima (Rimu)cmalsiB598
Lsi01G019030Cucurbita maxima (Rimu)cmalsiB792
Lsi01G019030Cucurbita moschata (Rifu)cmolsiB583
Lsi01G019030Cucurbita moschata (Rifu)cmolsiB780
Lsi01G019030Cucurbita pepo (Zucchini)cpelsiB055
Lsi01G019030Cucurbita pepo (Zucchini)cpelsiB392
Lsi01G019030Wild cucumber (PI 183967)cpilsiB259
Lsi01G019030Cucumber (Chinese Long) v2culsiB260
Lsi01G019030Melon (DHL92) v3.5.1lsimeB152
Lsi01G019030Watermelon (Charleston Gray)lsiwcgB135
Lsi01G019030Watermelon (97103) v1lsiwmB153
Lsi01G019030Cucumber (Gy14) v2cgyblsiB245
Lsi01G019030Melon (DHL92) v3.6.1lsimedB161
Lsi01G019030Melon (DHL92) v3.6.1lsimedB166
Lsi01G019030Silver-seed gourdcarlsiB170
Lsi01G019030Silver-seed gourdcarlsiB259
Lsi01G019030Silver-seed gourdcarlsiB260
Lsi01G019030Cucumber (Chinese Long) v3cuclsiB281
Lsi01G019030Watermelon (97103) v2lsiwmbB133
Lsi01G019030Wax gourdlsiwgoB173
Lsi01G019030Cucumber (Gy14) v1cgylsiB012