Lsi01G018970 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G018970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S12
Locationchr01 : 22164922 .. 22166492 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTGTATGTTTGGTTTATTGCTTGGTTTATATTTTATGACGTGTGATTTTCTATGATAGTTATGACACGTTGATGCATGTTGTGGAATATATGTTTAGACCATAGTATGTTGAAGCATTTATGGTTATGACATTGTTGGTAGAATGTTGACGCATGCAAAGTATGAATATGGATCATGGCTTGTTGATGCTTTTCATAATAGGTTATTGTCTATAGTGTATTAAAGTACGGTATATAATGATTCATGTGGTTAAATTTGATTATGCATATATCATGGGATTACATGTGAATGAGAGTTGATGCCACCTTAGTTTGTTGATGCTGCTAAGAGTGAATTTTGGTTGATGCCTATCCACATTAACTAACTATCCCATAATTGTGTTGATGTGGCTTATGCATTCCATAATGAAGCATGAGGGTCAGATATTATCATAGTTGTTAATGCCAACTAGATTGCAACTGTGTTGATGTATTGTCGTAGGTCAATTATTATCTTAGTTGTTAATGCAACTAAGGGTAAATTTGATTGATGCCTATCCATGTTGACTAAATTGAAGGAATTGAATTCCTAGGGAAAGGAATTTATCGCAATGTGATTTTAATTATTCAAGTGTGAATTTAAACGAAACAGATAAAATATAAAGAAAACAGGATAAACAACATGCTTTTAAGGGAAGAACAAAGAGCTTACGCTTGATAAAATTCCTTCTTCATTTAGCAATTTTCTTTGAGATAATGAACGTTTCACGAACAAAAACAAAAAGTGACGACACCACCAATGAAAACTTGCTATTCTCAAGGATATCAAGTCTTGGATATGTGGATTCCAAAGTACTTGGTAAGGAATGCTTTTGTGAGAGAGGAAAATACCAAAATTCCAGCAGAGAGCTCTAATTTTTTTCTATGAAGAGAAATATTTAACTTCTTTCATTCCCTCTTTTTGTGAGAGAGTAGGAGGGAGTTCCATAACTCCCTCTCCACTACGTGAAAATAATTCCCTCCGGGAGTTATCTAATTAATTCAATGTTAATTATTTAAATAACATCAATAATTGAAATTGAATTAATTAATATAAATATATGAAATCTACTTTAATATATATAGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

mRNA sequence

GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTACCATAGTTATTGTCTATAGTGTATTAAAGTACGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

Coding sequence (CDS)

GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTACCATAGTTATTGTCTATAGTGTATTAAAGTACGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

Protein sequence

GKQNEILPSRNNAKLYCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI
Homology
[Close]
BLAST of Lsi01G018970 vs. Swiss-Prot
Match: RT12_PETHY (Ribosomal protein S12, mitochondrial OS=Petunia hybrida GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.9e-63
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. Swiss-Prot
Match: RT12_PETPA (Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.9e-63
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. Swiss-Prot
Match: RT12_PANGI (Ribosomal protein S12, mitochondrial OS=Panax ginseng GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.8e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRL+NR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLANR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIF HIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFPHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. Swiss-Prot
Match: RT12_NICSY (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris GN=RPS12 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-61
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTKNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVK HCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKFHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. Swiss-Prot
Match: RT12_MAGSO (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana GN=RPS12 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-61
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEH MVLIRGGRVKDSPGVKSH IRGVKDLLGIP+RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHPMVLIRGGRVKDSPGVKSHRIRGVKDLLGIPNRRRGRSKYGAE 120

Query: 163 KQKSI 168
           + KSI
Sbjct: 121 RPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TrEMBL
Match: A0A072TTI0_MEDTR (NADH-ubiquinone oxidoreductase chain 3 OS=Medicago truncatula GN=MTR_0082s0040 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-64
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 1 

Query: 16  YCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 75
           +  I+ + S+ ++ RG   GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV
Sbjct: 214 FLLILTIGSLYEWKRG---GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 273

Query: 76  RPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 135
           RPRV  RTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGV
Sbjct: 274 RPRVFKRTPKKPNSAQRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDLPGV 333

Query: 136 KSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI 168
           KSHCIRGVKDLLGIPDRRRGRSKYGAEK KSI
Sbjct: 334 KSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 362

[Close]
BLAST of Lsi01G018970 vs. TrEMBL
Match: W6JLR7_HEVBR (Ribosomal protein S12 OS=Hevea brasiliensis GN=rps12 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.7e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TrEMBL
Match: G3EIY3_CUCSA (Ribosomal protein S12 OS=Cucumis sativus GN=rps12 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TrEMBL
Match: A0A0M4N326_9MAGN (Ribosomal protein S12 OS=Heuchera parviflora var. saurensis GN=rps12 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.9e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHS+VLIRGGRVKD PGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSIVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TrEMBL
Match: B9U3M2_CARPA (Ribosomal protein S12 OS=Carica papaya GN=rps12 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.9e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGR+EKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGRKEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TAIR10
Match: AT2G07675.1 (AT2G07675.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 230.7 bits (587), Expect = 6.5e-61
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TAIR10
Match: ATMG00980.1 (ATMG00980.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 230.7 bits (587), Expect = 6.5e-61
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 141.4 bits (355), Expect = 5.2e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

[Close]
BLAST of Lsi01G018970 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 141.4 bits (355), Expect = 5.2e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

[Close]
BLAST of Lsi01G018970 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 141.4 bits (355), Expect = 5.2e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

[Close]
BLAST of Lsi01G018970 vs. NCBI nr
Match: gi|922326855|ref|XP_013442820.1| (ribosomal protein S12C [Medicago truncatula])

HSP 1 Score: 253.8 bits (647), Expect = 2.0e-64
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 1 

Query: 16  YCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 75
           +  I+ + S+ ++ RG   GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV
Sbjct: 214 FLLILTIGSLYEWKRG---GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 273

Query: 76  RPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 135
           RPRV  RTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGV
Sbjct: 274 RPRVFKRTPKKPNSAQRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDLPGV 333

Query: 136 KSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI 168
           KSHCIRGVKDLLGIPDRRRGRSKYGAEK KSI
Sbjct: 334 KSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 362

[Close]
BLAST of Lsi01G018970 vs. NCBI nr
Match: gi|584592168|dbj|BAO50919.1| (ribosomal protein S12 (mitochondrion) [Hevea brasiliensis])

HSP 1 Score: 249.6 bits (636), Expect = 3.8e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. NCBI nr
Match: gi|346683369|ref|YP_004849331.1| (ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-62
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. NCBI nr
Match: gi|927682215|gb|ALE29227.1| (ribosomal protein S12 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 245.7 bits (626), Expect = 5.6e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHS+VLIRGGRVKD PGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSIVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]
BLAST of Lsi01G018970 vs. NCBI nr
Match: gi|224020970|ref|YP_002608203.1| (ribosomal protein S12 [Carica papaya])

HSP 1 Score: 245.7 bits (626), Expect = 5.6e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGR+EKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGRKEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

The following BLAST results are available for this feature:
BLAST of Lsi01G018970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT12_PETHY2.9e-6396.80Ribosomal protein S12, mitochondrial OS=Petunia hybrida GN=RPS12 PE=3 SV=1[more]
RT12_PETPA2.9e-6396.80Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1[more]
RT12_PANGI3.8e-6396.00Ribosomal protein S12, mitochondrial OS=Panax ginseng GN=RPS12 PE=3 SV=1[more]
RT12_NICSY1.2e-6195.20Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris GN=RPS12 PE=3 SV=1[more]
RT12_MAGSO3.6e-6194.40Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana GN=RPS12 PE=2 SV=1[more]
BLAST of Lsi01G018970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A072TTI0_MEDTR1.4e-6485.53NADH-ubiquinone oxidoreductase chain 3 OS=Medicago truncatula GN=MTR_0082s0040 P... [more]
W6JLR7_HEVBR2.7e-6399.20Ribosomal protein S12 OS=Hevea brasiliensis GN=rps12 PE=3 SV=1[more]
G3EIY3_CUCSA1.3e-6297.60Ribosomal protein S12 OS=Cucumis sativus GN=rps12 PE=3 SV=1[more]
A0A0M4N326_9MAGN3.9e-6297.60Ribosomal protein S12 OS=Heuchera parviflora var. saurensis GN=rps12 PE=3 SV=1[more]
B9U3M2_CARPA3.9e-6297.60Ribosomal protein S12 OS=Carica papaya GN=rps12 PE=3 SV=1[more]
BLAST of Lsi01G018970 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07675.16.5e-6192.00 Ribosomal protein S12/S23 family protein[more]
ATMG00980.16.5e-6192.00ATMG00980.1 Ribosomal protein S12/S23 family protein[more]
ATCG00065.15.2e-3457.72ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.15.2e-3457.72ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.15.2e-3457.72ATCG00905.1 ribosomal protein S12C[more]
BLAST of Lsi01G018970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922326855|ref|XP_013442820.1|2.0e-6485.53ribosomal protein S12C [Medicago truncatula][more]
gi|584592168|dbj|BAO50919.1|3.8e-6399.20ribosomal protein S12 (mitochondrion) [Hevea brasiliensis][more]
gi|346683369|ref|YP_004849331.1|1.9e-6297.60ribosomal protein S12 [Cucumis sativus][more]
gi|927682215|gb|ALE29227.1|5.6e-6297.60ribosomal protein S12 (mitochondrion) [Heuchera parviflora var. saurensis][more]
gi|224020970|ref|YP_002608203.1|5.6e-6297.60ribosomal protein S12 [Carica papaya][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006814 sodium ion transport
biological_process GO:0006412 translation
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018970.1Lsi01G018970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMsTIGR00981TIGR00981coord: 43..165
score: 2.1
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 69..84
score: 1.1E-52coord: 84..99
score: 1.1E-52coord: 100..119
score: 1.1E-52coord: 119..136
score: 1.1E-52coord: 136..152
score: 1.1E-52coord: 152..164
score: 1.1
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 41..158
score: 2.0
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 47..165
score: 3.4
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 85..92
scor
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 42..165
score: 6.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 44..165
score: 8.57

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G018970Cucumber (Gy14) v1cgylsiB012
Lsi01G018970Cucurbita maxima (Rimu)cmalsiB598
Lsi01G018970Cucurbita maxima (Rimu)cmalsiB792
Lsi01G018970Cucurbita moschata (Rifu)cmolsiB583
Lsi01G018970Cucurbita moschata (Rifu)cmolsiB780
Lsi01G018970Cucurbita pepo (Zucchini)cpelsiB055
Lsi01G018970Cucurbita pepo (Zucchini)cpelsiB392
Lsi01G018970Wild cucumber (PI 183967)cpilsiB259
Lsi01G018970Cucumber (Chinese Long) v2culsiB260
Lsi01G018970Melon (DHL92) v3.5.1lsimeB152
Lsi01G018970Watermelon (Charleston Gray)lsiwcgB135
Lsi01G018970Watermelon (97103) v1lsiwmB153
Lsi01G018970Cucumber (Gy14) v2cgyblsiB245
Lsi01G018970Melon (DHL92) v3.6.1lsimedB166
Lsi01G018970Silver-seed gourdcarlsiB170
Lsi01G018970Silver-seed gourdcarlsiB259
Lsi01G018970Silver-seed gourdcarlsiB260
Lsi01G018970Cucumber (Chinese Long) v3cuclsiB281
Lsi01G018970Watermelon (97103) v2lsiwmbB133
Lsi01G018970Wax gourdlsiwgoB173
Lsi01G018970Wax gourdlsiwgoB185