Lsi01G018960 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G018960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 22159892 .. 22164827 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGTGAGTGGAGGAAGAATCAAAAAAGAGAAAGGTATTGCAACTAATAAATAGTTGCTCGTTCATAAATTCAGTTGACCACTTGTTAGTCTTGCTACACTACACGACACGAGTGACGGGTGAAGTTGAAGCAGACACGGTCGACGTTCAGTCGACTTCACAAGTGATTCAACATACCATATGGAAATAATAAAAAAAGGAGAGAAGGGTCTCGCCCAGGTGGCTCCCGCAAGGTAACGACTTCAAACTCAAACAAAGAACGTTCTTCTCCAAGGCATGAGTCAAAGAAAATGCTGTATGTATCTAATGCAAGACCCGTCGATAAGCTAAGGCTACGACATGAAGGAAGGCGAAGAAGTCCATTCGATTTTTGTTTCGCCTTCTCCCGTGCACCCGCCTTAGGAAAAGCTGCTTCGCTCCTCTCCCAACCTTTCCATTCCCTTTTCTATCGAAACTGAGAAGTAGGGCGAGCAAAAAAGAGGGAATTCTCTAATCCGATAGCCTTACAACAAAGAAGCTTGCTTAACGCACTAGCTTTGAGTTCCGACTTAAAAGCTCTTAGAAGTTCAAAACCAAAAGACAAAGTGCCAAAGCTGTATCCAAGTTGTAATAAAAGAAAGAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGGTGCGCTGGGCACGAATCCAGTAGCCAGTTTCCCTAGCAGGCGGGTCACACGTACTATAACAATCATTTGAAAAAAGAAAATAAACAAACAACAGACTAACTATACTAGCAAACCAAGAAAGCACAAACCTTACGTCATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAGTGAATCACAGCTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTTCGAACCTTTTGGTATGTATTGCCCCCTAACTATAGATCAGATCCACCGGACGAGAAACTCAATTCCGCACTGCTGCGGAGTCGTCGGACTTATCCACCAAGGGATTCCTTGAATTTCTGTGGATTGCGTTGGAGGAAATCTACCAAAGCTAGGCAGATAGATGGACTCCTTCCCCGCTGCTAAGGGAGAGCAAGAAAAAAAATAAAATGATTGTTTTTTAATCAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATAATAGATTAATAAAAAATTAACTAATATCTCTCACATATGAATCTAATTCATATATTAATATTTGAATCTCATTCAAATATATTTCTCTCATATATTATAAAGTTCAATTTTGCATCTCATACTACAGACCGTTTAGATTATCTCTTAAACACGATCCACTTGTATGTCTCTACATACGTGTTTAAGTTACTACTAATAACATAGGATCTTAGTTTATTAGTTTTCAGGTTAATGAAACTAAAAGTCAAATAAAATAACAATTGTATTATTAAATAAATAATTTGGTTTACAAAATACAATACAAAACAACGAGATTTAGGGCATCAACCCAACATAAATATCCCGTAAGTGCGCTAATGAGACTTATGTCTTTCATGCTTGAGAATATGAGTTCGATATTATCATAGTTGTTGATGCAGCTGTTAGGTTTTATGTCCTAAAACTCATAGTTTGTAAACACTAACATGCATTCTATTGTCAATAAAGTTGTTATCGAGGTTATTCAATAAACTTGTTATTGAATATGTGAATTGTTGTTAACGTAACTCGAAATCCAATAAACAAAGAACCCATGGCTATAACATTATACTTGAACTATATGTGGAAACATAAAAGTGGATCAAGTTTGAGTAAATAGTCAAAATGGTATATACTATAAGGATTAGGCTGGGTACCTTATCCTAGGGATACTATTGAGTGCGACCCACTTTGTATTTGATACGACTAATGTGATCCTGAATCGTTCATGCGGAAACATGTGAGTGGGGGCATTCTTTGTAATAAGTTTGCATAAGATCAGACCACGAAATAGTCACTATTACTTTATAACGTCGTTTATTGTTAACACTGACTATTTCAATTAGATGACCTAGGTAACTCGATCTTAATCTTGAGCTAACTATGAACTCTTGTTTATTCAAGATTATTCTTAGATCTTCATGGGTGAGAGTGGCCCGAGTTTGTCGACTCAATATGCCTCCCATTTCAGGGGTAGGACAGAGTAGGTAGCTAGTGACGTAGTCATGCAAGACAAAATTCACTCATACTCGACTTAGGGATAATAGATTGGTTGTTCCCTTAAGTACTGACTCCGGGTCTTGAACAAGGGGCCCCACCCTTTCATGGCCCGAGAGGGACTCGATTTAATGATAGGATCACAAACCAGTTGTTCATTGGAGGATCAGTGGGACTTAAGGAACAAGATGTATTCACAGGGGTAAAATAATAATTTTGATTACGAACAACCTGTGAAGGATCAATTTACTAATTGTGGTTATATCAAGTGGACAAAAATATATCTACTGTGAGGAGAGTGCAGCTACAGGATTTAGTGGAGTGTCCCGTTAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTGGTTGGTTAATCTTGGATCGTTAGAGCTCATGATCTGTAGGTCCATTAGGTCTCTCTACTAGCTCACAAACGGATAAAATCTTAGATAGTATGGTGAATGAGTTTGAAATGTTCAAATTAGGTTTCGAAAATAAACGTTGGACATATGCGATATATCTAAATGTATCGACATTTAATTACGAATTAAAGAAAACAAATAGAGTTAAGAATAATGTTTAAATATGATTTAAATATTAAAAATATGAATAGGGATTCATATTTGAAAAATCATTTTTCAGAAAATCGGGTTAGTGGAAAAATAATATTATTTTAATATTAGGCATTAAACTAATATTATTTATTTATTTAAAATTAATTTTATATAAAATTAATTAATTATTTAATTTTATTTAAATTTTGAAAATTCAAATTGAAAAACTCAATTTTGAAAAAAATGGATTTCTCCACTCACAAGCAAGAAGCTTGGTGTAATCTTAAAATTTTGCCACTAATCCCGCTCCAAATCTTGATCAATTTGTTGCCATTTTGGTGTTAACTCTTAATGCATGTTCTTCTTCTATAAAACATGAAGATTTGGGCAGAGATTGGAGTTGAGATTTATGAAAATTAAGGGTTAATTTTGCAGAAATCTCTCTAGAACTCCTTCACTCACCTTCTTCATTTTTCTCAAAAATTGACCACCAAATTAGATCCCACCATCCAATCTAAGGCCAGAAATAGTAGAAAAAACTCTTGTGGTAGGCTACAAACAAGTCGTGTTCAATTTCGTGGAGAAATCAAGAAAAATTTGATCTTCAAAAGTTGTAATTTCTAATTCTTATTTTTCCCCTGTTTTGCATGAATGTTTATCCTCAAAATTGAGCATGTTAGAGTGTAACTCATCCTAATTCGCTTCCATTGCCTGTTCATATATCTATTAGCGGCTAGGTTGCGACTCTGTTGATGCATCGTCATAGTCCATTGATATAGACTCTAAGTTTCGTTGAAGCAGACTTGTCCATTTGTATGTCATGTCACGAGTATATGATAATCATGGTTATCTAAATTTGCATGATGTATTAGAGAGTATATCATGAGATTACATATGAACGAGGTTTGATATAACCTTAGTTTGTTGATGCAACTAAGGATATATTTTGGTTGATGCTATCCACATTGACTAGATATCCCATATCCCATAAGTGCGTTGATGCGGCTGGTGCATATACCATGTTGAAGCATGAATAAAGGTTGATGCAGCTAGATTGTGACTCTGTTGATGCATTGTCATTGGTCAATTGATACCTTAGTTTGTTGATGCAACTAAGGATGGATTTTGGTTGATGAATATTCACATTGACTAAATATCCCGTAAGTACAGTATTGATGCAGCTTATCCCTTTCATGCTTGAGTATGAGTTAGATATTATCATAGTTGTTGATGTGGCAAGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

mRNA sequence

ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGCGGGTCACACGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

Coding sequence (CDS)

ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGCGGGTCACACGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

Protein sequence

MTPLMESTTLAKKECIRLHSPVEAGHTGKLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQGQAKPTQELHQQTPHVDPGGERPLSFGYAGTKSPLTTNQQTSSGWVLPGATLLMHCRRSIDIGSRFHRSRFIHLYVMSRVYDNKGPIVCMMQ
BLAST of Lsi01G018960 vs. TAIR10
Match: AT2G07599.2 (AT2G07599.2 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1

Query: 88  FGYAGTKSPLTTNQQTSSGWVLPG 112
           F YA TKSPLTTNQQTSSGWVLPG
Sbjct: 214 FEYADTKSPLTTNQQTSSGWVLPG 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G07599.22.5e-0691.67 unknown protein[more]
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018960.1Lsi01G018960.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None