Lsi01G018730 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G018730
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
Locationchr01 : 20906082 .. 20910000 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGGTCAACAAAATTCTTATGCTCGAGGACAAGATAATAATAAAGGGGGTCGTAAACAAGTGCAGTTTGATCCGATTCCAATGACTTACACAGAGCTTCTGCCACGACTATTTCAGAATAATCAACTAGCACCTGTACCAATAGAACCACTCAACCTCCTCATCCAAAGTGGTATGACCCAAATGCCCGTTGTGATTATCATGCAGGAGTCAATGAGCATTCAATTAAGAATTGTACCGCACTTAAGTACAGGGTATAGGCATTGATCAAGGAGGGATGGCTGAATTTTAATAAGAATAATGGACCTGACGTAAATAATAACCCTCTTCCAAACCACCAAAATCCACAAGTAAATGCTGTAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTTCTCTGGAACGAAAGCCATTAACAATCTTTTATAAGGAAAAACCCAGTACTACCACTTCCAAACCAAAACCAATTACCATACAGGTTCCATCTCCATTTGAGTATTAAAGTTCAAAAGCAGTACTATGGAGTTATGAATACAAGGTACTTTTTGAGTCTGTACCAGTCCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTGTAAAATAAAGTGATTATAAAGTAATTGAACAGTTGGACAAAACGCCTGCTAGAATCTCTATTTTGCCTTATTATTATCTTCAGACCTGCATCGCAAAACTCTAATGAATATCCTGAACCAGACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAGTTAGAGGATTTTTGGGAAGGCTAAACTATATCGCAAGGTTTATATCACATCTAACTGCAACATGTGAGCCCATCTTTAAGCTACTTCGTAAGAGTGATGCAGAAGTATGGAATGAAGACTGTCAAAAGGCATTCGAAAAGGTCAAACAATACTTACAGAATCCTCCTGTGCTAGTCCCTCCGACTCCAGGTCGCCCGCTTATTTTGTATCTTACTGTGACAGAAAGTTCAATGGGATGTGTACTGGGACAACATGATGATTCAGCCAAAAAGGAGCAGACTATATATTACTTGAGCAAGAAGTTCACCAGTTGTGAGACAAGATATTCTTTGCTTGAAAAGACGTGTTGTGCACTGGCATGGGCTGCCCGTCGTTTAAGGCCATACATGTTATATTATACGACATGGCTTATCTCAAAGATGGACCCCATAAAGTACATTTTTGAAAAACCGTCTCTTTCAGGCAGAATTGCAAAGTGGCAAGTTCTCTTATCTGAATATGATATAGTCTATGTTACTCGAAAGTCAATCAAAGGAAGTACACTAGCTGACTACTTAGCTGAGCAACCCATAGATGACTATGAGCCAATGAAATTTGATTTTCCTGATGAATTGGTCTCTTCCTTAGCAAAAGTAGAAGAAATACCGAATTCAAAGGCATGGACAATGCTGTTTGATGGAGCCTCCAATGAATTAGGTCATGGAATAGGTGTCATTTTGATTTCACCAGAAGGAAAGTTATTCCCTTTGACAGCCAAGTTAAATTTTGATTGTACTCATAATGTGGCCGAATACGAAGCTTGCTCTATGGGTATCCAGGCAACATTAGATATGAAAATCAAGAAGCTGCGAGTTTTAGGAGATTCCATGTTGGTAATTCACCAGTTAAGGGAAGAATGGGAAACAAGAGACGCTAAACTTCTCCCATACAAAAAGCTAATAATGGAATTGTCGCAAAAGTTCGATAAAGTTACTTTTGGTTATCTACCAAGGGAAAGTAATCAGGTAGCAGATGCTTTAGCCACATTGGGGGTCTTATTTAGCATAGACCTCAATCAGGAGGTACAACCTATCAAAATTGAAAAGCGAGATGCTCTGGCCACTTGCATGGCTATTGAAGAAGAGTCTGATGGTAAACCGTGGTATTTTGACATTAAAAAGTTTATTAAATGTTGAGAATATCCATTGAATGCCTCAGAGAATGATAAGGGCACACTTAGAAAGTTAGCAATGAAATTCTTCTTGAACGGAGAAGTACTTTACAAAATAAATCATGACATGGTACTCTTAAGATGTGTAGATGCGACAGAGGCAAATAAAATCATGAAAGAAACTCACGAAGGAGTTTGCGGAACTCGTGCAAATGGACATATGATGGCTAGACAAGTATTAAGATCTGGTTATTACTGGTTAACTATGGAAAAAGATTGCACTAAGCATGCGAGAGAGTGCCACAAATGTCAGATATATGCAGACAAAGCCCACGCACCTGCATCTCAGTTACATGTTATGACAGCTCTTTGGCCTTTTTCTATGTGGGGAATGGATGTGATAGGCCCCATCGAGCCTAAAGCCTCGAATGGACATCGTTTTATTTTGGTAGCAATTGATTACTTCACCAAGTGGGTGGAAGCAATGTCTTATCGAGAGGTGACAAAGACAGTTGTCATTAAGTTCATAAAAAAAGAGATTATTTGCCGTTATGGTCTTCCTGAAACTATAGTGACTGATAACGCTCGAAATTTGAATAATAAATTGATGAAGGAGTTGTGTGAACAGTTCAAGATCAAGCACCTCAACTCAACTCCCTATAGGCCAAAAATGAATGGAGCAGTGGAAGCCGCTAACAAGAATATAAAAAGAATCGTGCAAAAGATGACGGTAACATATAAGGATTGGCATGAAACGCTTCCTTTTGCACTACATGGTTATCGCACATCAGTTCGGACTTCAACTGGGGCAACGCCATTTTCTCTAGTCTACGGTATGGAGGTTGTTCTTCCTATTGAGGTAGAGATTCCATCCTTGCGAGTTCTTATGGATGCTAAACTAAAAGAAGCAGAATAGGTCCAAAACCGCTATGAACAACTAAATTTTGTGGAAGAAAAAAGACTAACAGCATTATGCAGAGGTCAACTATATCAAAAACGGATGACAAGAGCTTAAGACAAGAAGGTACGCCCCAGAGTTTTCAGAGCAGGAGATCTGGTTTTAAGGCGATTTCTCCCGTTTCAGAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

mRNA sequence

ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

Coding sequence (CDS)

ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

Protein sequence

MINKVNHGNISQLPHPNSGVPHYPHNYHAPPHPYYQPYVNDAAVQYYPPPPQNQCSYVNQGYQPQDVDEVGLRDVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFLIVSQKVVGESKREHEIDAAEEFSTDNINEIGGTTRSGKCYTPEALLKYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRLTYVPSDITTDNLDNIVGSITASSSITFTDDEIPPEGMGHTKAILEMPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV
BLAST of Lsi01G018730 vs. TrEMBL
Match: A0A151UBR9_CAJCA (Pol polyprotein OS=Cajanus cajan GN=KK1_021024 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1

Query: 266 DDEIPPEGMGHTKAILE--MPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMD 325
           D ++ P        +L+  +PP     ++DHRGKWTPNYEGPYVV+K F GG LILTNMD
Sbjct: 207 DKKVHPRDFQEGDLVLKKILPP-----QRDHRGKWTPNYEGPYVVKKVFSGGALILTNMD 266

Query: 326 GDRLPNPVNSDHV 337
           G+ L NP+NSD V
Sbjct: 267 GEDLLNPINSDAV 274

BLAST of Lsi01G018730 vs. TrEMBL
Match: A0A151T038_CAJCA (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_022821 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-13
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           +KDHRGKWTPNYEGPYVV+KAF GG LILTNMDG+ L  PVNSD V
Sbjct: 325 QKDHRGKWTPNYEGPYVVKKAFSGGALILTNMDGEDLSLPVNSDAV 370

BLAST of Lsi01G018730 vs. TrEMBL
Match: A0A151RXS0_CAJCA (Gypsy retrotransposon integrase-like protein 1 OS=Cajanus cajan GN=KK1_031029 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           ++DHRGKWTPNYEGPY+V+KAF GG LILTNMDG+ L NP+NSD V
Sbjct: 262 QRDHRGKWTPNYEGPYMVKKAFSGGALILTNMDGEDLLNPINSDAV 307

BLAST of Lsi01G018730 vs. TrEMBL
Match: A0A0S3RTY8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G112500 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           +KD+RGKWTPNYEGP+VV+KAF GG LILT MDG+ LP PVNSD V
Sbjct: 28  QKDYRGKWTPNYEGPFVVKKAFSGGALILTRMDGEELPLPVNSDAV 73

BLAST of Lsi01G018730 vs. TrEMBL
Match: Q2HW89_MEDTR (Integrase, catalytic region; Ribonuclease H OS=Medicago truncatula GN=MtrDRAFT_AC147774g2v1 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           + D RGKWTPNYEGPYVV++AF GG LILTNMDG+ LP PVNSD V
Sbjct: 931 QPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVNSDAV 976

BLAST of Lsi01G018730 vs. NCBI nr
Match: gi|1012365588|gb|KYP76770.1| (Pol polyprotein [Cajanus cajan])

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1

Query: 266 DDEIPPEGMGHTKAILE--MPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMD 325
           D ++ P        +L+  +PP     ++DHRGKWTPNYEGPYVV+K F GG LILTNMD
Sbjct: 207 DKKVHPRDFQEGDLVLKKILPP-----QRDHRGKWTPNYEGPYVVKKVFSGGALILTNMD 266

Query: 326 GDRLPNPVNSDHV 337
           G+ L NP+NSD V
Sbjct: 267 GEDLLNPINSDAV 274

BLAST of Lsi01G018730 vs. NCBI nr
Match: gi|955327347|ref|XP_014632648.1| (PREDICTED: uncharacterized protein K02A2.6-like [Glycine max])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1

Query: 288 TQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           T   KDHRGKW PNYEGP+VV++AF GG L+LTNMDG+ LP+PVNSD V
Sbjct: 231 THAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPVNSDVV 279

BLAST of Lsi01G018730 vs. NCBI nr
Match: gi|1012349226|gb|KYP60416.1| (Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           +KDHRGKWTPNYEGPYVV+KAF GG LILTNMDG+ L  PVNSD V
Sbjct: 325 QKDHRGKWTPNYEGPYVVKKAFSGGALILTNMDGEDLSLPVNSDAV 370

BLAST of Lsi01G018730 vs. NCBI nr
Match: gi|955309670|ref|XP_014627683.1| (PREDICTED: uncharacterized protein LOC106797532 [Glycine max])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 1

Query: 288 TQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           +Q +KDHRGKW PNYEGP+VV+KAF GG L+LTNMD + LP+PVNSD V
Sbjct: 128 SQAQKDHRGKWAPNYEGPFVVKKAFSGGALLLTNMDDEELPSPVNSDIV 176

BLAST of Lsi01G018730 vs. NCBI nr
Match: gi|1012336034|gb|KYP47346.1| (Gypsy retrotransposon integrase-like protein 1 [Cajanus cajan])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 291 EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
           ++DHRGKWTPNYEGPY+V+KAF GG LILTNMDG+ L NP+NSD V
Sbjct: 262 QRDHRGKWTPNYEGPYMVKKAFSGGALILTNMDGEDLLNPINSDAV 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A151UBR9_CAJCA3.0e-1354.79Pol polyprotein OS=Cajanus cajan GN=KK1_021024 PE=4 SV=1[more]
A0A151T038_CAJCA3.9e-1380.43Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_022821 P... [more]
A0A151RXS0_CAJCA3.9e-1376.09Gypsy retrotransposon integrase-like protein 1 OS=Cajanus cajan GN=KK1_031029 PE... [more]
A0A0S3RTY8_PHAAN1.9e-1276.09Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G112500 PE=... [more]
Q2HW89_MEDTR1.9e-1276.09Integrase, catalytic region; Ribonuclease H OS=Medicago truncatula GN=MtrDRAFT_A... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|1012365588|gb|KYP76770.1|4.3e-1354.79Pol polyprotein [Cajanus cajan][more]
gi|955327347|ref|XP_014632648.1|5.6e-1371.43PREDICTED: uncharacterized protein K02A2.6-like [Glycine max][more]
gi|1012349226|gb|KYP60416.1|5.6e-1380.43Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan][more]
gi|955309670|ref|XP_014627683.1|5.6e-1371.43PREDICTED: uncharacterized protein LOC106797532 [Glycine max][more]
gi|1012336034|gb|KYP47346.1|5.6e-1376.09Gypsy retrotransposon integrase-like protein 1 [Cajanus cajan][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018730.1Lsi01G018730.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None