Lsi01G018670 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G018670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 20697900 .. 20698404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGTAAGGAGGCCGCCAGAGAGGAAGCCAAACCGGCCTATTAAGCGCAGCTAAGCTAATATGCGCCGGAGAAAGCCAGGTGCCGGAGGTAAGCTCTATTCGGCCCGGAGCATTGATTCCCTATAACGAATAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

mRNA sequence

AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

Coding sequence (CDS)

AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

Protein sequence

KRHEKSPSRVFGPLPNNCTLSWGVFGFTRESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPHSMAWHLSLIQAKRD
Homology
[Close]
BLAST of Lsi01G018670 vs. TrEMBL
Match: A0A0A0L6E8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G088940 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-21
Identity = 66/133 (49.62%), Postives = 68/133 (51.13%), Query Frame = 1 

Query: 29  RESPPEKKVFLFPSRIIFRCAHRRGNRNASC----SAGVAWSGSVAW------------- 88
           RESPP KKV LFP  I   C  R   R   C       + W  SVA              
Sbjct: 65  RESPPPKKVCLFPLGI---CEVRPQKRKEQCILLSRPSLEWECSVAHGARLELSGSLNGT 124

Query: 89  ---------------------VRLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPH 124
                                 RLARDLNCLSCAREGPPVPRQHLEVHF VL ETRDIPH
Sbjct: 125 PTGLLSAAKLICPRSGESQVPERLARDLNCLSCAREGPPVPRQHLEVHFDVLDETRDIPH 184

[Close]
BLAST of Lsi01G018670 vs. TrEMBL
Match: A0A072V832_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g040760 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLA 76
           E  P  KVF+F S   FRC HRRGNRNASCSAGVAWSGSVAWVR++
Sbjct: 60  EIKPAIKVFIFSSWRRFRCVHRRGNRNASCSAGVAWSGSVAWVRIS 105

[Close]
BLAST of Lsi01G018670 vs. NCBI nr
Match: gi|700201039|gb|KGN56172.1| (hypothetical protein Csa_3G088940 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 66/133 (49.62%), Postives = 68/133 (51.13%), Query Frame = 1 

Query: 29  RESPPEKKVFLFPSRIIFRCAHRRGNRNASC----SAGVAWSGSVAW------------- 88
           RESPP KKV LFP  I   C  R   R   C       + W  SVA              
Sbjct: 65  RESPPPKKVCLFPLGI---CEVRPQKRKEQCILLSRPSLEWECSVAHGARLELSGSLNGT 124

Query: 89  ---------------------VRLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPH 124
                                 RLARDLNCLSCAREGPPVPRQHLEVHF VL ETRDIPH
Sbjct: 125 PTGLLSAAKLICPRSGESQVPERLARDLNCLSCAREGPPVPRQHLEVHFDVLDETRDIPH 184

[Close]
BLAST of Lsi01G018670 vs. NCBI nr
Match: gi|922390111|ref|XP_013463478.1| (hypothetical protein MTR_2g040760 [Medicago truncatula])

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLA 76
           E  P  KVF+F S   FRC HRRGNRNASCSAGVAWSGSVAWVR++
Sbjct: 60  EIKPAIKVFIFSSWRRFRCVHRRGNRNASCSAGVAWSGSVAWVRIS 105

The following BLAST results are available for this feature:
BLAST of Lsi01G018670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G018670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6E8_CUCSA7.2e-2149.62Uncharacterized protein OS=Cucumis sativus GN=Csa_3G088940 PE=4 SV=1[more]
A0A072V832_MEDTR1.1e-1073.91Uncharacterized protein OS=Medicago truncatula GN=MTR_2g040760 PE=4 SV=1[more]
BLAST of Lsi01G018670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G018670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201039|gb|KGN56172.1|1.0e-2049.62hypothetical protein Csa_3G088940 [Cucumis sativus][more]
gi|922390111|ref|XP_013463478.1|1.6e-1073.91hypothetical protein MTR_2g040760 [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018670.1Lsi01G018670.1mRNA