Lsi01G018620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G018620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Myb/SANT-like DNA-binding domain protein
Location	chr01 : 20371852 .. 20374191 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTAGTGAATGGTGGGATGAACAAATAAAGGTGATCTTTGATGTTTTCTAAAAATTATAATTTTCAATATAACTAGTTAATGGTAGAGTGAATAGTGTGGTGACAATACTATTATTATTTTATAGGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAACATTGATACTTTTTGGTATTTAGGTCTTTTAGGTGTGAACTTCCTTGGATAAAAAAAGCTAGAAAAGTTTGTTCAATCTTGTATTTGTTAACTGGAATTGAGTTTAATCCTCCATTTGTTGTTTCGTTTTCGTGAACTATTGATTGTGTTTAACTGTGTTTATGGTTGATAATGGTGATATTATTGGTTGAGGGTGTTTGGATTGTATATAATTGTGCTTATGGTTGATTGTGTTTTTTTTTGTTAACAGAAATGTCGTCTGATATGATTGATAATGATGATACTAATAGCTCTTTAGACGATTGTGACGATGAAGATTATGACCATTTAGTTGAAATTGGATGTACAATGGTTGTGAGTCATTTCCAAAAATATGTTGATAAAGAACCATGCAGGACTTCATTTCACACAGGTTTCAAGTTTGTTTGAGAGGTTTTAAATGGTCATGATGTTAGGTGTCATCAACAATTTAGGATGGAAAAACACGTGTTTACTCAATTATTGATGACACTTAATCAAAATTATGACCTCAAAAGTAGTTCAGATGTGCCAATGGAAGAAGCTCTAGCTATGTTCCTTATCACATTAGGGCATGGTTTAACTAATAGAATGATTCAAGAAAGGTTTCAACACTCAGGTCTGTTTCTAGATGGTTTGGTTTGGTATTAGATGTTGTTTGTCATTTAGCTACGGACATCATTAAACCAAGTGATCTGCAATTCAGAGCAATTCCAAGTAAAATTAGAAGTGATGATCGATATTGGCCATACTCTAAAAATTGCATAGGAGCAATTGATGGCACCCATATATCAGTTGTTCCTCCTAAAGATAAACAAATACCATATATTGGTAGAAAAGGTATTGCTACCCAAAATGTTATGGCCGTATGTGATTTTAATATGTGCTTCACTTTTACTTGGGCTGGTTGGGAAGGTGCTGCTCATGACTCACGTATCTTCATGGAAGCTTTATAAAGGCCTCATTTAAATTTTCCTCATCCACCTAAAGGTTTGCTTTGAAAATTTTGATACTAAAATTTGCATGGTTTATAATTTTTTTAAAAAAATTTACTGTGCATTTTACAGGTAAATATTATCTCGTTGATGTCGGATATCCACAAATGAAAGGATATCTAGGCCCTTATAAAGGCGAAAGATATCACCTTCCTGATTTTCGTCGTGGGAGTCAACCAAGAGGTAAGAAGGAAATATTTAACCATAGACATTCATCTTTAAGGTGTACAATTGAGAGGACATTTGGTGTTTGGAAAAATAGATGGAAAATGTTACGCCATATGCATAGTTTTCCTTTTGATAAACAAGTGAAGGTTGTTGTTGCATCAATGGCACTTCATAATTTTGTACGAACTCATTCTACAACTGACTTTGAGTTCAAGCTTTTTGACGATGACGAAGATTTTCTCCCTTCAAGTGATGACCGAAATGAGTTGAGTGTTGCTGAAGAAAGTGAAATTTCTTGTCATGGAAGGGAGATGGAAGAGGAGTGGGAGAAAATTGCAAGACTTCTTATATCTCGTTAATGTTTTTGTTATACAGTTTGTATTTCAATAGATAATATCTAGTTTAAGTATTTTGTAATGATACAAAGATTTCTAGATTGGATGAGATACATGTTTTGAATTTTCTTTTGTTTTTATTATGTATATTTTTCTT

mRNA sequence

ATGCAACTAGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAACATTGATACTTTTTGGTATTTAGGTCTTTTAGGTGTGAACTTCCTTGGATAAAAAAAGCTAGAAAAGTTTGTTCAATCTTGTATTTGTTAACTGGAATTGAGTTTAATCCTCCATTTGTTGTTTCGTTTTCGTGAACTATTGATTGTGTTTAACTGTGTTTATGGTTGATAATGGTGATATTATTGGTTGAGGGTGTTTGGATTGTATATAATTGTGCTTATGGTTGATTGTGTTTTTTTTTGTTAACAGAAATGTCGTCTGATATGATTGATAATGATGATACTAATAGCTCTTTAGACGATTGTGACGATGAAGATTATGACCATTTAGTTGAAATTGGATGTACAATGGTTGTGAGTCATTTCCAAAAATATGTTGATAAAGAACCATGCAGGACTTCATTTCACACAGGTTTCAAGTTTGTTTGAGAGGTTTTAAATGGTCATGATGTTAGGTGTCATCAACAATTTAGGATGGAAAAACACGTGTTTACTCAATTATTGATGACACTTAATCAAAATTATGACCTCAAAAGTAGTTCAGATGTGCCAATGGAAGAAGCTCTAGCTATGTTCCTTATCACATTAGGGCATGGTTTAACTAATAGAATGATTCAAGAAAGGTTTCAACACTCAGGTCTGTTTCTAGATGGTTTGGTTTGGTATTAGATGTTGTTTGTCATTTAGCTACGGACATCATTAAACCAAGTGATCTGCAATTCAGAGCAATTCCAAGTAAAATTAGAAGTGATGATCGATATTGGCCATACTCTAAAAATTGCATAGGAGCAATTGATGGCACCCATATATCAGTTGTTCCTCCTAAAGATAAACAAATACCATATATTGGTAGAAAAGGTATTGCTACCCAAAATGTTATGGCCGTATGTGATTTTAATATGTGCTTCACTTTTACTTGGGCTGGTTGGGAAGGTGCTGCTCATGACTCACGTATCTTCATGGAAGCTTTATAAAGGCCTCATTTAAATTTTCCTCATCCACCTAAAGGTAAATATTATCTCGTTGATGTCGGATATCCACAAATGAAAGGATATCTAGGCCCTTATAAAGGCGAAAGATATCACCTTCCTGATTTTCGTCGTGGGAGTCAACCAAGAGGTAAGAAGGAAATATTTAACCATAGACATTCATCTTTAAGGTGTACAATTGAGAGGACATTTGGTGTTTGGAAAAATAGATGGAAAATGTTACGCCATATGCATAGTTTTCCTTTTGATAAACAAGTGAAGGTTGTTGTTGCATCAATGGCACTTCATAATTTTGTACGAACTCATTCTACAACTGACTTTGAGTTCAAGCTTTTTGACGATGACGAAGATTTTCTCCCTTCAAGTGATGACCGAAATGAGTTGAGTGTTGCTGAAGAAAGTGAAATTTCTTGTCATGGAAGGGAGATGGAAGAGGAGTGGGAGAAAATTGCAAGACTTCTTATATCTCGTTAATGTTTTTGTTATACAGTTTGTATTTCAATAGATAATATCTAGTTTAAGTATTTTGTAATGATACAAAGATTTCTAGATTGGATGAGATACATGTTTTGAATTTTCTTTTGTTTTTATTATGTATATTTTTCTT

Coding sequence (CDS)

ATGCAACTAGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAA

Protein sequence

MQLVVPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVRGFTDDIVGEIKVNESENVESTANDVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCDVIEYRRRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQKKV

Homology

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BLAST of Lsi01G018620 vs. Swiss-Prot
Match: LIMYB_ARATH (L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 1


Query: 6   PEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQG----FVSKFVSDRVRGFTDDIVG 65
           P A ++R K + + +QL I+F  V+  G     PS+       ++  S + R  T   + 
Sbjct: 268 PRAGQFRHKEVPHADQLAIIFNGVIEPGETYTPPSRSRKKLLHNRSESPQWRDTTP--LS 327

Query: 66  EIKVNESENVESTANDVDISETYTQGREKKRKKIGSGA--GSSKMSDKLDRLCDVIEYRR 125
           ++ V+E+E              Y + +E +     +        M+D + +   V     
Sbjct: 328 KMHVDEAETSRQNG-------CYAESQEDRIDSENAQPLDDMKLMNDVMLQESPVFVEIE 387

Query: 126 RDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQ 179
              P  +I E + +L ++ E+ +G ELYM   ++F KRE RE+F+ +KKP  +I WL++
Sbjct: 388 SAKPMYSIGECIKSLNAIEEVEQGSELYMFALDLFLKREYREIFLELKKPSLRIAWLQR 437

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BLAST of Lsi01G018620 vs. TrEMBL
Match: A0A0A0KKV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167170 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.2e-46
Identity = 106/183 (57.92%), Postives = 136/183 (74.32%), Query Frame = 1


Query: 4   VVPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAP--SQGFVSKFVSDRVRGFTDDIVG 63
           V+PEAAK+RAKGLQ++E L+ILFK V + GG AWAP  SQ  + K   +    + +D +G
Sbjct: 114 VLPEAAKFRAKGLQSLELLNILFKGVAINGG-AWAPNPSQVVLRKESDEVEEDYNEDTIG 173

Query: 64  EIKVNESE--NVESTANDVDISETYTQGREKKRKKIGSGAGS-SKMSDKLDRLCDVIEYR 123
           + K NE+E  NVES  N+V+ S T+TQ  EK+RK++ S  GS S++ D LDRL DVIEYR
Sbjct: 174 DTKFNENEFNNVESNTNEVNTSATHTQESEKRRKRVDSKVGSPSRLFDALDRLSDVIEYR 233

Query: 124 RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQ 182
           +RDLP C+ LEVM+TL SLP I+EGDELYMK  +I  KRENREMFVA++KP  +I WLKQ
Sbjct: 234 KRDLPGCSTLEVMETLRSLPGIIEGDELYMKAADILIKRENREMFVALQKPAIQITWLKQ 293

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BLAST of Lsi01G018620 vs. TrEMBL
Match: A5BZZ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023750 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-28
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 6   PEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSD--RVRGFTDDIV--- 65
           PEA K++ KGL+NVEQLDILFKD+V TG  AWAPSQGFV + V D  +V    D+I+   
Sbjct: 61  PEAIKFKTKGLKNVEQLDILFKDIVATGEKAWAPSQGFVGQDVDDSSKVGEHEDNIIEGQ 120

Query: 66  GEIKVNESENVESTANDVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCDVIEYR-- 125
            +   N S +  S + +     +  +  E++RK+      S  ++ +L+R+C V+E R  
Sbjct: 121 DDCGCNSSLDSISHSFEATTQPSMEKKNEERRKRKRDETKSELVAIQLERICSVVENRSS 180

Query: 126 ---RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEW 182
              R D P C+I+EVM  +  +PE+    ELYMK T I   +ENREMFVA++ P  +I W
Sbjct: 181 ISCRGDKPGCSIVEVMKIIRGMPEVKNDFELYMKATNIMVVKENREMFVALEDPIDQIAW 240

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BLAST of Lsi01G018620 vs. TrEMBL
Match: V4SX90_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013387mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 77/195 (39.49%), Postives = 108/195 (55.38%), Query Frame = 1


Query: 5   VPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVRGFTDDIVGE-- 64
           +PE  K+R+KGL N +QL+ILFKDV   G G+WAP  GFV    +D   G +++ +GE  
Sbjct: 20  IPEGIKFRSKGLINADQLEILFKDVAAIGEGSWAPFMGFVP---NDGEGGPSNEYIGEDN 79

Query: 65  ----------IKVNESENVESTANDVD----ISETYTQGREKK---RKKIGSGAGSSKMS 124
                     I+ N    +E+   D+D    I+ T+  GR++K   RK+ G+ A  S+ S
Sbjct: 80  NMYFQEKNVNIEPNNFGGLENIETDIDNGTPIASTHDNGRKRKLPIRKRDGAAAVESRPS 139

Query: 125 DKLDRLCDVIEYRRRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVA 181
             +          R     C+I EVM+ L S+PEI    ELY+  T+IF K+ENREMF A
Sbjct: 140 IAI----------RNGENGCSIAEVMEVLYSMPEIEIKSELYLNATKIFLKKENREMFAA 199

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BLAST of Lsi01G018620 vs. TrEMBL
Match: A5AXN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023669 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 63/167 (37.72%), Postives = 97/167 (58.08%), Query Frame = 1


Query: 7   EAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVR-GFTDDIVGEIKV 66
           EA K++ KGL+NVEQLDILFKD++ TG GAWAPSQGFV + V D    G  +D + E + 
Sbjct: 161 EAIKFKTKGLKNVEQLDILFKDIIATGEGAWAPSQGFVGQEVDDSSNVGEHEDNIIEDQD 220

Query: 67  NESEN--VESTANDVDISETYTQGREKK----RKKIGSGAGSSKMSDKLDRLCDVIEYR- 126
           + S N  +++  N  + +   +  ++KK    RK+  +   S  ++ +L+R+C  +E R 
Sbjct: 221 DSSCNPPLDTIFNGFEATSQPSMAKKKKNEGRRKRKRNETKSKLVAIQLERICSAVENRS 280

Query: 127 ----RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENRE 162
               + D P C+I EVM  +  +P++    ELYMK T+I     N +
Sbjct: 281 SISSKGDKPGCSIAEVMKIIRGMPKVKNDFELYMKATDIMMPSNNND 327

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BLAST of Lsi01G018620 vs. TrEMBL
Match: W9S3T7_9ROSA (D-2-hydroxyglutarate dehydrogenase OS=Morus notabilis GN=L484_013241 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 57/191 (29.84%), Postives = 97/191 (50.79%), Query Frame = 1


Query: 3   LVVPEAAKYRAKGLQNV--EQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVRGFTDDIV 62
           L+ P AA++R +G++ +  E+L+ +F + V TG  AW PS G V    SD+       + 
Sbjct: 131 LIHPNAARFRTRGIEPLLEEKLNRMFMNTVATGVYAWTPSSGQVP-CESDKGENDKSSLP 190

Query: 63  GEIKVN-------ESENVESTANDVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCD 122
            +++ +        SE  ++  N   I     Q + KK K      G++K+S ++D L D
Sbjct: 191 EQLESSGESGEPIRSELAQARKNKRSIERDERQNKVKKGKGNVKVGGAAKLSQQIDHLVD 250

Query: 123 VIEYRRR-------DLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAI 178
           ++E R         D   C++ +V++ L SLP +  G ELY  +  +   +  R+ F+A 
Sbjct: 251 IVESRSTGSSIAPSDTGNCSMAKVVEVLDSLPGLQTGSELYFFSVHLLLDKCKRDAFMAF 310

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BLAST of Lsi01G018620 vs. TAIR10
Match: AT5G05800.1 (AT5G05800.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 1


Query: 6   PEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQG----FVSKFVSDRVRGFTDDIVG 65
           P A ++R K + + +QL I+F  V+  G     PS+       ++  S + R  T   + 
Sbjct: 268 PRAGQFRHKEVPHADQLAIIFNGVIEPGETYTPPSRSRKKLLHNRSESPQWRDTTP--LS 327

Query: 66  EIKVNESENVESTANDVDISETYTQGREKKRKKIGSGA--GSSKMSDKLDRLCDVIEYRR 125
           ++ V+E+E              Y + +E +     +        M+D + +   V     
Sbjct: 328 KMHVDEAETSRQNG-------CYAESQEDRIDSENAQPLDDMKLMNDVMLQESPVFVEIE 387

Query: 126 RDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQ 179
              P  +I E + +L ++ E+ +G ELYM   ++F KRE RE+F+ +KKP  +I WL++
Sbjct: 388 SAKPMYSIGECIKSLNAIEEVEQGSELYMFALDLFLKREYREIFLELKKPSLRIAWLQR 437

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BLAST of Lsi01G018620 vs. NCBI nr
Match: gi|659073259|ref|XP_008436966.1| (PREDICTED: uncharacterized protein LOC103482538 [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 3.2e-47
Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 1


Query: 4   VVPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAP--SQGFVSKFVSDRVRGFTDDIVG 63
           V+PEAAK+RAKGLQNVE L+ILFK V + GG AWAP  SQ  + K   +  + + DD +G
Sbjct: 116 VLPEAAKFRAKGLQNVELLNILFKGVAINGG-AWAPTPSQVVLRKESDEVEKDYNDDTIG 175

Query: 64  EIKVNESE--NVESTANDVDISETYTQGREKKRKKIGSGAGS-SKMSDKLDRLCDVIEYR 123
           + K NE+E  NVES  N+V+ S TYTQ  EK+RK++ S  GS S++ D LDRL D IEYR
Sbjct: 176 DTKFNENEFNNVESNTNEVNTSATYTQESEKRRKRVDSKVGSPSRLFDALDRLSDAIEYR 235

Query: 124 RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQ 182
           +RDLP C+ LEVM+TL SLP I+EGDELYMK  +I  KRENREMFVA++KP  +I WLKQ
Sbjct: 236 KRDLPGCSTLEVMETLRSLPGIIEGDELYMKAADILIKRENREMFVALQKPLIQITWLKQ 295

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BLAST of Lsi01G018620 vs. NCBI nr
Match: gi|449451976|ref|XP_004143736.1| (PREDICTED: uncharacterized protein LOC101216242 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 1.0e-45
Identity = 106/183 (57.92%), Postives = 136/183 (74.32%), Query Frame = 1


Query: 4   VVPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAP--SQGFVSKFVSDRVRGFTDDIVG 63
           V+PEAAK+RAKGLQ++E L+ILFK V + GG AWAP  SQ  + K   +    + +D +G
Sbjct: 114 VLPEAAKFRAKGLQSLELLNILFKGVAINGG-AWAPNPSQVVLRKESDEVEEDYNEDTIG 173

Query: 64  EIKVNESE--NVESTANDVDISETYTQGREKKRKKIGSGAGS-SKMSDKLDRLCDVIEYR 123
           + K NE+E  NVES  N+V+ S T+TQ  EK+RK++ S  GS S++ D LDRL DVIEYR
Sbjct: 174 DTKFNENEFNNVESNTNEVNTSATHTQESEKRRKRVDSKVGSPSRLFDALDRLSDVIEYR 233

Query: 124 RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQ 182
           +RDLP C+ LEVM+TL SLP I+EGDELYMK  +I  KRENREMFVA++KP  +I WLKQ
Sbjct: 234 KRDLPGCSTLEVMETLRSLPGIIEGDELYMKAADILIKRENREMFVALQKPAIQITWLKQ 293

[Close]

BLAST of Lsi01G018620 vs. NCBI nr
Match: gi|659133345|ref|XP_008466688.1| (PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-41
Identity = 97/181 (53.59%), Postives = 132/181 (72.93%), Query Frame = 1


Query: 5   VPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFV---SDRVRGFTDDIVG 64
           +PE AK+RAKGLQN +QLDILFKD+ VT  GAWAPSQGFV +     S R  G  DD   
Sbjct: 1   MPETAKFRAKGLQNADQLDILFKDIEVTEDGAWAPSQGFVPQSTEGNSSRYVGENDDTYK 60

Query: 65  EIKVNESENVESTANDVDISETYTQGREKKRKKIGS-GAGSSKMSDKLDRLCDVIEYRRR 124
           +++ N   N E + ++V   E YTQG+ KKRK+IGS G  ++K+ ++L+R+C  I+ RRR
Sbjct: 61  DMEHN---NTEYSIHNV---EDYTQGKGKKRKRIGSKGNVANKLCNQLERVCGSIDNRRR 120

Query: 125 DLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQKK 182
           DLP C+I EVM+ L  + E+++GDEL+MK  +IFTK ENRE+FVA+++PE ++ WLKQKK
Sbjct: 121 DLPGCSIFEVMNVLWDIHELIKGDELFMKAADIFTKMENREIFVALQEPEIQVAWLKQKK 175

[Close]

BLAST of Lsi01G018620 vs. NCBI nr
Match: gi|147846462|emb|CAN81665.1| (hypothetical protein VITISV_023750 [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 6   PEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSD--RVRGFTDDIV--- 65
           PEA K++ KGL+NVEQLDILFKD+V TG  AWAPSQGFV + V D  +V    D+I+   
Sbjct: 61  PEAIKFKTKGLKNVEQLDILFKDIVATGEKAWAPSQGFVGQDVDDSSKVGEHEDNIIEGQ 120

Query: 66  GEIKVNESENVESTANDVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCDVIEYR-- 125
            +   N S +  S + +     +  +  E++RK+      S  ++ +L+R+C V+E R  
Sbjct: 121 DDCGCNSSLDSISHSFEATTQPSMEKKNEERRKRKRDETKSELVAIQLERICSVVENRSS 180

Query: 126 ---RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEW 182
              R D P C+I+EVM  +  +PE+    ELYMK T I   +ENREMFVA++ P  +I W
Sbjct: 181 ISCRGDKPGCSIVEVMKIIRGMPEVKNDFELYMKATNIMVVKENREMFVALEDPIDQIAW 240

[Close]

BLAST of Lsi01G018620 vs. NCBI nr
Match: gi|731376720|ref|XP_010656484.1| (PREDICTED: uncharacterized protein LOC104880670 [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 6   PEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVR-GFTDDIVGEIK 65
           PEA K++ KGL+NVEQLDILFKD++ TG GAWAPSQGFV + V D  + G  +D + E +
Sbjct: 95  PEAIKFKTKGLKNVEQLDILFKDIIATGEGAWAPSQGFVGQEVDDSSKVGEHEDNIIEDQ 154

Query: 66  VNESEN--VESTAN--DVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCDVIEYR-- 125
            + S N  +++  N  +     +  +  E +RK+  +   S  ++ +L+R+C  +E R  
Sbjct: 155 DDSSCNPPLDTIFNGFEATTQPSMAKKNEGRRKRKRNETKSELVAIQLERICSAVENRSS 214

Query: 126 ---RRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEW 182
              + D   C+I EVM  +  +PE+    ELYMK  +I   +ENR+MFVA++ P  +I W
Sbjct: 215 ISSKGDKSGCSIAEVMKIIRGMPEVKNDFELYMKAIDIMVVKENRDMFVALEDPIDQIAW 274

The following BLAST results are available for this feature:

BLAST of Lsi01G018620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIMYB_ARATH	2.1e-06	25.70	L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB P...	[more]

BLAST of Lsi01G018620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV6_CUCSA	7.2e-46	57.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167170 PE=4 SV=1	[more]
A5BZZ8_VITVI	3.0e-28	43.01	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023750 PE=4 SV=1	[more]
V4SX90_9ROSI	1.1e-22	39.49	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013387mg PE=...	[more]
A5AXN9_VITVI	1.3e-18	37.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023669 PE=4 SV=1	[more]
W9S3T7_9ROSA	2.8e-13	29.84	D-2-hydroxyglutarate dehydrogenase OS=Morus notabilis GN=L484_013241 PE=4 SV=1	[more]

BLAST of Lsi01G018620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05800.1	1.2e-07	25.70	unknown protein	[more]

BLAST of Lsi01G018620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073259\|ref\|XP_008436966.1\|	3.2e-47	59.56	PREDICTED: uncharacterized protein LOC103482538 [Cucumis melo]	[more]
gi\|449451976\|ref\|XP_004143736.1\|	1.0e-45	57.92	PREDICTED: uncharacterized protein LOC101216242 [Cucumis sativus]	[more]
gi\|659133345\|ref\|XP_008466688.1\|	2.0e-41	53.59	PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis melo]	[more]
gi\|147846462\|emb\|CAN81665.1\|	4.4e-28	43.01	hypothetical protein VITISV_023750 [Vitis vinifera]	[more]
gi\|731376720\|ref\|XP_010656484.1\|	3.5e-25	40.32	PREDICTED: uncharacterized protein LOC104880670 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018620.1	Lsi01G018620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 6..42 score: 5.3E-32coord: 63..178 score: 5.3
None	No IPR available	PANTHER	PTHR31704:SF9	SUBFAMILY NOT NAMED	coord: 63..178 score: 5.3E-32coord: 6..42 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G018620	Cucumber (Chinese Long) v3	cuclsiB281
Lsi01G018620	Watermelon (97103) v2	lsiwmbB133
Lsi01G018620	Cucumber (Gy14) v1	cgylsiB606
Lsi01G018620	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G018620	Cucurbita maxima (Rimu)	cmalsiB603
Lsi01G018620	Cucurbita maxima (Rimu)	cmalsiB787
Lsi01G018620	Cucurbita moschata (Rifu)	cmolsiB590
Lsi01G018620	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G018620	Cucurbita moschata (Rifu)	cmolsiB777
Lsi01G018620	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G018620	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G018620	Cucurbita pepo (Zucchini)	cpelsiB051
Lsi01G018620	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G018620	Cucurbita pepo (Zucchini)	cpelsiB398
Lsi01G018620	Wild cucumber (PI 183967)	cpilsiB259
Lsi01G018620	Cucumber (Chinese Long) v2	culsiB260
Lsi01G018620	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G018620	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G018620	Watermelon (97103) v1	lsiwmB156
Lsi01G018620	Watermelon (97103) v1	lsiwmB150
Lsi01G018620	Cucumber (Gy14) v2	cgyblsiB245
Lsi01G018620	Melon (DHL92) v3.6.1	lsimedB166
Lsi01G018620	Silver-seed gourd	carlsiB256
Lsi01G018620	Silver-seed gourd	carlsiB170
Lsi01G018620	Silver-seed gourd	carlsiB171