Lsi01G018610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G018610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein
Location	chr01 : 20370051 .. 20371399 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAGTTGTGCAGCAATATCCTTGCTTAACTTCCAAATTTGAAGCAGGGTGGATTTCCATGGCTTTTGATGTCAGGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGACGAATAATAGTGAAGGATCTTGGTTGCTATTCTCTTGAAGTTAGTTTGTTGAATCCATTCTCTACAAGGAAGATTAACCTGCCAAGGCTTTGGAACTTCTACCAAATGGACCTTGATACTACATAGCTAACTACATTTGTATTAAGGTTGTGAGAGATTTAACCCACTATATCCCTTTGGCCTTATTACATGCCTTCTTTGACCTTTTAATCTATAATAGTCATGTTAAGGGAGAAGAAGAAGTATCAGGAATAAAACGTCACAAGAGACGAGATCTAAAATAGGATATAGTTCAGGGAGAAGAAGAAGTATCGAGACTAAAACGTTAGGAGAGCCAAGATCTAAAATAGGATATAGTTCAAGAAGAAGAAGTATAAGGACTAAAACATTACGAGAGCCAAGATCTAAAATAGGATATAATTCAGGGAGAAGAAGAAACATAGGGACTTAAATGTCACGAAAGCCGAGATCTAAAATAGGATATAGTTTACGAAGAAGAAGAAGTATAGGGACTAAAACGTTACGAAAGTCGGATCTAAAATAGGATATAGTTTAGGGAGAAGAAGAAGTAGATGTAGATATAGATAATCTTTAACTGCTCCCTTTGAAAATCATGTGCAAATTGACGGTAGAATTACACATACTTTGCTGTAAGTTTTAAGGAAAAAAAAGTCATAGAAAAAAGTTCTAAAAATCATTAAAATAATTATATTGGTAAAATCACAGTGGAATATATGTTTTTTCCACCATTACTGGAACCTGCTGAGAATATAAACAAGAAACAATCAAAACAACCTTTACTTAAGAGATGAAGAAGAGAGGATAGTTTAGTGGACGTTTTGAAATTCTTTATATATGTGTGTGTTTATTTCTTTTTCTTTTTCTTTTCTTTTAGGGATTGTTCCAACTGTTATTTTTATATATTATATTTGATGAGATTGTAAAACAATATCCCTGGATTTGTACCTTTTTCTTTCATAACATGAAAAGTTTGCTGC

mRNA sequence

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGACGAATAATAGTGAAGGATCTTGGTTGCTATTCTCTTGAAGTTAGTTTGTTGAATCCATTCTCTACAAGGAAGATTAACCTGCCAAGGCTTTGGAACTTCTACCAAATGGACCTTGATACTACATAGCTAACTACATTTGTATTAAGGTTGTGAGAGATTTAACCCACTATATCCCTTTGGCCTTATTACATGCCTTCTTTGACCTTTTAATCTATAATAGTCATGTTAAGGGAGAAGAAGAAGTATCAGGAATAAAACGTCACAAGAGACGAGATCTAAAATAGGATATAGTTCAGGGAGAAGAAGAAGTATCGAGACTAAAACGTTAGGAGAGCCAAGATCTAAAATAGGATATAGTTCAAGAAGAAGAAGTATAAGGACTAAAACATTACGAGAGCCAAGATCTAAAATAGGATATAATTCAGGGAGAAGAAGAAACATAGGGACTTAAATGTCACGAAAGCCGAGATCTAAAATAGGATATAGTTTACGAAGAAGAAGAAGTATAGGGACTAAAACGTTACGAAAGTCGGATCTAAAATAGGATATAGTTTAGGGAGAAGAAGAAGTAGATGTAGATATAGATAATCTTTAACTGCTCCCTTTGAAAATCATGTGCAAATTGACGGTAGAATTACACATACTTTGCTGTAAGTTTTAAGGAAAAAAAAGTCATAGAAAAAAGTTCTAAAAATCATTAAAATAATTATATTGGTAAAATCACAGTGGAATATATGTTTTTTCCACCATTACTGGAACCTGCTGAGAATATAAACAAGAAACAATCAAAACAACCTTTACTTAAGAGATGAAGAAGAGAGGATAGTTTAGTGGACGTTTTGAAATTCTTTATATATGTGTGTGTTTATTTCTTTTTCTTTTTCTTTTCTTTTAGGGATTGTTCCAACTGTTATTTTTATATATTATATTTGATGAGATTGTAAAACAATATCCCTGGATTTGTACCTTTTTCTTTCATAACATGAAAAGTTTGCTGC

Coding sequence (CDS)

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGA

Protein sequence

MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCKKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD

Homology

[Close]

BLAST of Lsi01G018610 vs. TrEMBL
Match: A0A0A0KT87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610380 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-31
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           M KSKRRNQRQRKKRKL++GRGN  +DWA LP D+LVMIF+QLSLVDC+S+D+VCK    
Sbjct: 109 MSKSKRRNQRQRKKRKLENGRGNSTVDWAALPRDVLVMIFEQLSLVDCISVDNVCKLWSN 168

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCASIL+NR+WE+EL EAYGAY+WGSFQD
Sbjct: 169 ILSELPNWKMGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSFQD 224

[Close]

BLAST of Lsi01G018610 vs. TrEMBL
Match: W9QTH9_9ROSA (F-box protein OS=Morus notabilis GN=L484_016589 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIM--DWAGLPHDILVMIFKQLSLVDCMSIDSVCK-- 60
           M   ++RN++Q+ + +L +     ++  DWAGLP  IL +IF+QLSL+DC+S+ +VCK  
Sbjct: 1   MPSQRKRNRKQKNQTQLNEENDGEVVSVDWAGLPKGILEIIFEQLSLIDCISVSNVCKPW 60

Query: 61  ------------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                   KDRE R C S+L+ R WEME+ EA G Y WGSFQD
Sbjct: 61  RKVFSRELSCWERLGFPSLLMSGQKDREKRICISMLEKRAWEMEMPEARGKYCWGSFQD 119

[Close]

BLAST of Lsi01G018610 vs. TrEMBL
Match: W9RW78_9ROSA (F-box protein OS=Morus notabilis GN=L484_021728 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIM--DWAGLPHDILVMIFKQLSLVDCMSIDSVCK-- 60
           M   ++R ++Q+K+R+L +  G  ++  DWAGLP  IL +IF++LSL DC+S+ +VCK  
Sbjct: 1   MAARRKRKRKQKKRRQLNEENGGEVVSVDWAGLPKGILEIIFERLSLFDCISVSNVCKPW 60

Query: 61  ------------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                   KDR+ R C S+L+ R WEME+ EA G Y WGS+QD
Sbjct: 61  RNVFSRELSCWEGLGFPSLFMSGQKDRDKRLCISMLEKRAWEMEIPEARGKYCWGSYQD 119

[Close]

BLAST of Lsi01G018610 vs. TrEMBL
Match: M5W5Y5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016839mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 10  RQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK------------- 69
           R+RK++KL +      +DW  LP  IL +IF++L++ DC+S+  VCK             
Sbjct: 2   RRRKQQKLVN------LDWTELPRGILEIIFERLTVTDCISVSDVCKAWRHVVAQELAGW 61

Query: 70  ------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                       KDRE+RTC SIL  + W++ L EAYG Y WGS+QD
Sbjct: 62  QSRGVPWLMMSGKDREVRTCISILQKQHWDIVLPEAYGRYCWGSYQD 102

[Close]

BLAST of Lsi01G018610 vs. TrEMBL
Match: A0A0B2QE96_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_048940 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1


Query: 5   KRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCKKDRE---- 64
           K R +  R+K++LK  + NF  DW+ LP  IL M+ ++L+ +DC+SI  VC         
Sbjct: 53  KCRKKIHRRKKELK--KKNFA-DWSSLPRGILEMVAERLTFIDCLSISKVCTSWNRVLGE 112

Query: 65  ----------------------MRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                 +RTC SIL+NR+WE+EL EAYG Y WGSF D
Sbjct: 113 ELPRWQRHGFPWLLVSDQQNKEIRTCISILENRVWELELSEAYGKYCWGSFCD 162

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: gi|700196927|gb|KGN52104.1| (hypothetical protein Csa_5G610380 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           M KSKRRNQRQRKKRKL++GRGN  +DWA LP D+LVMIF+QLSLVDC+S+D+VCK    
Sbjct: 109 MSKSKRRNQRQRKKRKLENGRGNSTVDWAALPRDVLVMIFEQLSLVDCISVDNVCKLWSN 168

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCASIL+NR+WE+EL EAYGAY+WGSFQD
Sbjct: 169 ILSELPNWKMGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSFQD 224

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: gi|659091584|ref|XP_008446623.1| (PREDICTED: uncharacterized protein LOC103489302 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 74/116 (63.79%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           M KSKRRNQRQRKKRKL+D RGN + DWAGLP DILVMIF+QLSLVDC+S+D+VCK    
Sbjct: 1   MSKSKRRNQRQRKKRKLEDRRGNSVADWAGLPRDILVMIFEQLSLVDCISVDNVCKLWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCASIL+NR+WE+EL EAYGAY+WGS QD
Sbjct: 61  ILSELPNWKRGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSLQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: gi|449435216|ref|XP_004135391.1| (PREDICTED: uncharacterized protein LOC101209996 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           M KSKRRNQRQRKKRKL++GRGN  +DWA LP D+LVMIF+QLSLVDC+S+D+VCK    
Sbjct: 1   MSKSKRRNQRQRKKRKLENGRGNSTVDWAALPRDVLVMIFEQLSLVDCISVDNVCKLWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCASIL+NR+WE+EL EAYGAY+WGSFQD
Sbjct: 61  ILSELPNWKMGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: gi|703077233|ref|XP_010090539.1| (F-box protein [Morus notabilis])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIM--DWAGLPHDILVMIFKQLSLVDCMSIDSVCK-- 60
           M   ++RN++Q+ + +L +     ++  DWAGLP  IL +IF+QLSL+DC+S+ +VCK  
Sbjct: 1   MPSQRKRNRKQKNQTQLNEENDGEVVSVDWAGLPKGILEIIFEQLSLIDCISVSNVCKPW 60

Query: 61  ------------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                   KDRE R C S+L+ R WEME+ EA G Y WGSFQD
Sbjct: 61  RKVFSRELSCWERLGFPSLLMSGQKDREKRICISMLEKRAWEMEMPEARGKYCWGSFQD 119

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: gi|703140387|ref|XP_010107207.1| (F-box protein [Morus notabilis])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIM--DWAGLPHDILVMIFKQLSLVDCMSIDSVCK-- 60
           M   ++R ++Q+K+R+L +  G  ++  DWAGLP  IL +IF++LSL DC+S+ +VCK  
Sbjct: 1   MAARRKRKRKQKKRRQLNEENGGEVVSVDWAGLPKGILEIIFERLSLFDCISVSNVCKPW 60

Query: 61  ------------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                   KDR+ R C S+L+ R WEME+ EA G Y WGS+QD
Sbjct: 61  RNVFSRELSCWEGLGFPSLFMSGQKDRDKRLCISMLEKRAWEMEIPEARGKYCWGSYQD 119

The following BLAST results are available for this feature:

BLAST of Lsi01G018610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G018610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT87_CUCSA	1.9e-31	62.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610380 PE=4 SV=1	[more]
W9QTH9_9ROSA	9.6e-15	40.34	F-box protein OS=Morus notabilis GN=L484_016589 PE=4 SV=1	[more]
W9RW78_9ROSA	1.3e-14	39.50	F-box protein OS=Morus notabilis GN=L484_021728 PE=4 SV=1	[more]
M5W5Y5_PRUPE	1.3e-11	39.25	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016839mg PE=4 S...	[more]
A0A0B2QE96_GLYSO	1.9e-10	38.94	Putative F-box protein OS=Glycine soja GN=glysoja_048940 PE=4 SV=1	[more]

BLAST of Lsi01G018610 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G018610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196927\|gb\|KGN52104.1\|	2.8e-31	62.93	hypothetical protein Csa_5G610380 [Cucumis sativus]	[more]
gi\|659091584\|ref\|XP_008446623.1\|	2.8e-31	63.79	PREDICTED: uncharacterized protein LOC103489302 [Cucumis melo]	[more]
gi\|449435216\|ref\|XP_004135391.1\|	2.8e-31	62.93	PREDICTED: uncharacterized protein LOC101209996 [Cucumis sativus]	[more]
gi\|703077233\|ref\|XP_010090539.1\|	1.4e-14	40.34	F-box protein [Morus notabilis]	[more]
gi\|703140387\|ref\|XP_010107207.1\|	1.8e-14	39.50	F-box protein [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018610.1	Lsi01G018610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 25..76 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 28..57 score: 2.3
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 27..57 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G018610	Cucumber (Gy14) v1	cgylsiB606
Lsi01G018610	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G018610	Cucurbita maxima (Rimu)	cmalsiB603
Lsi01G018610	Cucurbita maxima (Rimu)	cmalsiB787
Lsi01G018610	Cucurbita moschata (Rifu)	cmolsiB590
Lsi01G018610	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G018610	Cucurbita moschata (Rifu)	cmolsiB777
Lsi01G018610	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G018610	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G018610	Cucurbita pepo (Zucchini)	cpelsiB051
Lsi01G018610	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G018610	Cucurbita pepo (Zucchini)	cpelsiB398
Lsi01G018610	Wild cucumber (PI 183967)	cpilsiB259
Lsi01G018610	Cucumber (Chinese Long) v2	culsiB260
Lsi01G018610	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G018610	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G018610	Watermelon (97103) v1	lsiwmB156
Lsi01G018610	Watermelon (97103) v1	lsiwmB150
Lsi01G018610	Cucumber (Gy14) v2	cgyblsiB245
Lsi01G018610	Melon (DHL92) v3.6.1	lsimedB166
Lsi01G018610	Silver-seed gourd	carlsiB256
Lsi01G018610	Silver-seed gourd	carlsiB170
Lsi01G018610	Silver-seed gourd	carlsiB171
Lsi01G018610	Cucumber (Chinese Long) v3	cuclsiB281
Lsi01G018610	Watermelon (97103) v2	lsiwmbB133