Lsi01G017740 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G017740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	chr01 : 16706800 .. 16713606 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGTTTGCCCTCCAAAGTAAAGTTATTCATTAATATTTTCTAAACCTCCCATTTTCTTCATTCCACACTCATCTCTTTCTCAATCTTTCTCCAACCACTCTAGTATCACTCTCCATTCTAAAAAAACTTTGGTAAGAAATTACATTTTTGTTAAAGCTTTTGAGTTTTCATGCTTATTTTTTTCTCAACATTTTTTGACAACCACACTTTTCTCTTACACTTTTTTTCATCACAAGAAAAATTATGTGAAAAAAATTACCAACCAATTATTCACGCGCTAGAATTTCCTCCATTTTTTGATGGACCTACCCATACTACTAAGACCAAAAGATATAAATTCAAATTGGGTTTTGAATCTTTTCTCATATCTTCTCGTGTGAAAAAAATTCATCGATAGGAAAGTGCAAGAATTACATAAACTCAAACTTTGTAGTGCTTGAATTTTTCTCGCAGTGTGGAAAAATTTACATAAATTCAAAACTTGAGGTGCTTGTGAGGGGAGAAAGTTCAAGAAAATTTATAGAAAATCAAAATTTAAGGTGCTACAATTTTTCTCGTTGTTTCTCGTAGCCAGAAAATGCGATAAAATTTATAGAAACTCAAAATTTAAGTTATTGGAATTTTTCTTGCATCTTCTCGCAGCGAAAAAATGTGAGAAAATTTACAAAACTCGAAATTTTTTGTGCTGAAATTATTATTACAACTTCTCGTAGCGAGAAAGTGAGAAAATGTACATTACATCAAAATTTTGAGTTGCTGGAACTTTTCTCGCAGCTTATTGCCGAGAAAATTTACAGAAACTCATAAGATTTTCAACTTTTATCTTCTATAAGTGAACAAATTGAAGATTTTATAGTAATTGTATTTAATTAGTCCAAATTCAATTATTTGTAATTTCGTCATTCATTTGAGAAATGATGTGTCAATTTGTGATTGGTCCAAAATTTCCCATTCAACGAAACCTTTGAGTTTGAATATGAGGAAGCGTCGATGAAGTCTTCAAACTAAAGCGAGCAACACCCTGCACTCAAAACTTATTTAAAGCAAGCAAAGAGAAATACAAGGTTTCTCCAAAAGCTACTTTATAAGCATCTAACTTACAGTGTCTTAATCTTAGTGCTATATACCCCTTTGATTTGTGCGTTGCCCCCAATGAGGCATCTTAAACCCACATTCTTTGACTATAATGAACACCATCAATTTTCTAGTGTCACGCTTTAGGCGATTGTGACACTTTTTTTTTTTGGACTGAACTTAAATTTCTTTAAGTTGCCTACATACCCTTGAAGAAAGGGACCAAGTCATAAAGTAGTTCAACTACGATTTTTTTCTCTTTTTACTAGACTGAACTTAAAGTTTCCTTCAATCTACCTACATACCCTTTATAATGTATAGGGATCAAGTCATAACGTATTTCAACTGAGTTCTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTGCTTTTTACTGAACTGAACCTAAAGTTTTCTTCAAGCTTCCTGGATACTCTTTATAAGGATATGGATCAAGTCATAACGTAGTTCAAAGTTTTTTTTTTTTTTTCCATTTACCTTTTAAACTCATGCGAGTTAGGAGCACTATGTAGTTTAGGCTCTTGCGATAAAGAGCTTCTACATTTAAGCTTTAGAAGCTCTTATTTCATCATGACTTTGTTCGTCTCCTTCATTTGTAGGATTCGTCAATATGATGAGTTTTGGCTTCACCATCAAGGAACCTTCTGTATTTATGTCAATAGACAACTTCCTCTTCTTGCCTGAAGGGACACGACTGTGAATCTTCTCGCCGTTGTTTTCTTCATGAAATAATTTTGCCTTCAAGATTTTTATCTTTCTTTCATGTTGACTGCTTGTCATTTTAAGACGATCAAAACTAGATGTTGAAGGTAGATCTTTCTTTTATATGGAGATACTTAACCTTTTGAAGCTTGAAGTTAGGGTGGAGGTGATTGCTAAACATTGATCTTCCTCTTTTATCTTGGTCATACCCGATCTTTGGAAGACTGAATATTGAGTAGTTGAAGGCTTGAGATGATCGAAGACAGAAGTTCATTGCTCAGGTTTTTTTTAATTGTCGACTTCTTCAACGGTTATGTGATTGTTGTTGGCAACTTTTGAGCATTCTGTAAATGGTGACTCACCCTTCTTACGTCTTGACAAATGAACATAGTGCAAGATTGAAAGACTCGGAGATTTCTCATCTTTTAAAATTCTAGTCTTTGCAGGGCTAGTGAATGCCTAACTCTTTTGAGAGGTGGAAGTACTTGTCTTTTTGCTTGACTCTTTTTTTGCATTCACATGTGATTTTAGCTTTGGATTATCCTCACCTTTCATTAGAGGGATTTTTGCAGGCATAGCTTTTCTGACATTATCAATCTTTGAGTAAAACTTTGCGTCTACAAAGTGAGACTCAGCTTCTGAGAATGCATTAGAGTCTGCTTCAACCTTCTTAATGTCATCTTGATAAAACTTGAAGCATTGGTGCAGTGTTGAAGTTATCACTCCATTTCTATGAATCCAAGGACGATCTAGTAACAACTTATAAGTGGTCTTTGAATCTATAACATGAAACAATGTGTTGGCCTTCAGTTCGCTAATGATGAGTTCTAAGGTGTCATGCCTATCGCTCTTTGGCTGCCTTGGTTGAAGCCTTGAATTACTAATTTGTTGTTTGACAGTTCTTCCTGTTGGGGTTGATGCCCTAAATCTCGTGGTCTTGTATTTTGTAAACTTGTATTGTACTAACTAAATTATTTATTTAATAAAATAATTGTTATTTTCTTTGATATTTGGTTGCATTAACCCAAAAACCAATAAACTAAGATCCTAGATTATTAGTAGTAACTTAAACACGTATGTAGAGACATACAAATGGATCGTGTTTAAGTGGTAACCTAAACGGTTTGTAGTAGATGGATAAAGCTAGGTACCTTATCCTAGTAACACTACGGATACAACCCACTTTGTGATTGTTACAAGTGTTGTAAAGTGTCACAAACGTTGATATCCTAAATGTTGATGTGGATTTGCTTGTGTACTTTTTTTAATTGCTTTCAGGAACCAAGTATTTGGGATTGGAGCTTCATGTACCTGTCTTAGATTAGATGTATTGACAACTTGCACAGATGTAAAACGTGGCATATCTACTTCTCATGTCTCATCTGAAAGTTTTCCAATTTCACAGATTGGTTTCACAACTTGATTCGTGGGCCTTCAGGACATGGTGTAGACAGATGCAGTCTTTCTTCACAAGCTGGTGCAAGAAGTAGTGGGGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGACTCACCCGAAAAAATAATGCCTACTCAAACTGCTGATTTAGAGGAAGATGACATGTTGATTTCTAATCTACAACTATTTGAAGACAGTGATGGTGATTCGGTAGGGCCCTCTCAAAATGATTTAGATTTATCAGAGGCTATGGATGATGTGGACGAAAAGATTCCAATAAATAGAAAGGCTTACTCGGAATTGTTTCAGGCCATAATGAGTAGTCCAGGCTTATCTGTTCATGGCGTTCTGGATAAATGGGTGAAAGAAGGAAAGGATTTAAGCAAATCTGAGATATCAATAACCATGCTTAATCTCCGTAAAAGTCGACGTTATGGAAGGGCATTACAAGTGATTTTCATCATTTTATCTGTAGTTTAACTAGTTTAGAAACTTGCTGATTTTCCTTGTAGTTTAAGTCTCAGGTAGATTACAATAGGTTTAGCCTTACACTTACACATGAAAACTCAATTTCCTAAGGTTTCAAAAAGAGAAAGAATGCATCTTTAGTCTATCCAGTTAAAAAAAAAGGGAGTAATTAGCATACAATTTTAAAGCTTGTGAATACGACCAATGCAATGAATTTACACTGTAATAAATATTATTTATTTATATGTAATTATATTTTGGAGAATAATTATGCTTTGCTCACCAGCACCGCCTTGAGGTTCTCAAAGGAAAAGATGTCTATTTGTATGTCATTTTTATTCATGAACCGCTTAAGGCATCAAATTATTATTTAATAATTTTGATGTAATTTAATAATTTTCAAATTTATCCTTGTTAATGACATTTTAAGTAGGATTATTTTAGACATTTTACTATGAATTATGATAAGTCATTAGGGTTTTATTAAGAGGCTATTTAAAGTCTTGCCTTTAGGTTGTTGGAAAACAGTTTTTGATGTTTTTAGAACTTGAATGAGAATTTTCTAGTAGATGACAGAGTTTTATCCCGCCACTTTTGCAATTGGCGATTCTTGAATCAGGGTTGCATGCCAAGAACATTCAGGTAAGTCTGATCATCTTGCTTGTGGAATGTTCGAACTTGGAGTAAGAAACTAGTTCTCCTTATCTCTTGGTCTTCGATCAAAAGGTAATCTAATTCTAGTCTTTTCCTTTGGATTGACATCAATTGATTTGGGGGTTTTGAAATTTGTTGTTAAGGGTTCAACAATTGAGTTCCTAATTTTCAAATTGCTAGGATTTTCATATAAGAACTTCTTGTCTCATAACACCTTGTGGTTACTCCCTTCACCAAAAGAACAAGATTCAAGTTCAGATTTACTACTTCTATTTTCCTTACCACACGTACCTAGATATTATTTGCACCACCATATGATGTATGGGCTATGAAGGTGATTGTAGACATCTAGCTACCTGATTAGTCTCTCTATAAATATGTTAATGTGAATCAAATCAGGGAAAAACTGTTTGTTACTTGGTCTGCTGCTACCTCATGATCATTCATTTAATTATGTGGCAGTTGACAAATATTATGGTTGCTTCTTGTATGACTTGTTATACCGATCGAATATCCCCAAAGGGATCCAAATACTTGTGCTCATGTTATATAATGCACTAACAAGTTTTGTAGTTGAAACTCCGTGATGCTATAACCCAATAGTTGTATTATCAAGAATTTTGTACTTTACCATGTTTACACCAATGTCAGTCTAAGATTACTTCATTCAATTTCCATACTCTTCTATGTGCCAGCTTGGTTGTGGCAAAAAAATTTGGTGCAAATTTGGAATATGGTTTCAAACGTGCTTAGCTTAGGGCAACTCTATGTTGGGTGACCTCTTGGNATGCTATAACCCAATAGTTGTATTATCAAGAATTTTGTACTTTACCATGTTTACACCAATGTCAGTCTAAGATTACTTCATTCAATTTCCATACTCTTCTATGTGCCAGCTTGGTTGTGGCAAAAAAAATTTGGTGCAAATTTGGAATATGGTTTCAAACGTGCTTAGCTTAGGGCAACTCTATGTTGGGTGACCTCTTGTAAATTTTCTTAGGAAACATGTGAGTGAACACAAAGCATGTTGTAAGGACCTGTATTGGTTTGTGGGGGTAGTCTTCACTCTTAAAAGCGGTTCAAGACAAGCAAGGATAACATTGCAAGGTCGTAAGTGTAAGAAGATCTGAGTTAGATGTTGAATAAAAGTATTTATTTGAGTGATAGACTTACAGTGTTGAAAGGTAGATAGGTTAAAGCGGACTGTAGATATCACAAAAGGGTAGTACTTACCGTCCTCACACCTCCTTCCAGGTGAAAAAGGTAAATTTGGGAGGGGATGTGACAGTAAGAGATGTAAGAAAATGCCGGTACCATTAGGTGCTAATTTTGAATTCTGCGCATGGGATGTTACAATTGAACTAGGGTTGAAGGTATGAAAAAAGAAAACAATTACAAAAACAAGAACTGGCGAAAGATTGAACTAGGAAGAACTTATATTGATAACTTATTCAGGAAATAAAAGTAATAGTCACAAGCGGCTCAACACCAAAATTGAAAAAACCAGCAAATAATATTTGATTTTTTTTAAAAAAGAAGATTTAAATAATAAAAAAAAATGAACAAACAATAATGAAAACCAAAAAGATAATGGAAATCGGAAAAAAAAAAATTGGATTTCAAATTGGAAAGAGAAGATAATTTAGATTTCAAATTATTTATAGGGAAAATTTTTTTAGTACTTTAGTTTTTAGAAATAGGTGCAATTAGTCCCTATAATTTTAATTTGACCATTTTAGTCCCTCACTTTTACAAAATAGGTTTAAAAGGTCCCTATTCTCCTTTACTAAATTTGTTTAATATTTTGTATTGTTTCAAAAACTAAAAAATGACATATTTAATTTTTAAAATAAAAAACAATATCTCTCCTCTCACTTTCCATCGTTCTCCTCTCTCTCCTCCTCTTCTTCCACCGTCCTTTTATCTGATCTTCATCTTTCTCTCCCATTGTCTGATCGATGAACTTGTACAACAAGGTAACAACAGTGAATGCGAATCATCCAAATTTCCGTCACCTTCTCCCCTCGTCAGAAGGCCATCACGCCGAAAAACTGCCGACACAAGTCGTTTGCTCGTCGGAAGATCAAAATACGATCACGAAGAGCAAAGAAGATAGATGA

mRNA sequence

ATGACTAATTGGTTTCACAACTTGATTCGTGGGCCTTCAGGACATGGTGTAGACAGATGCAGTCTTTCTTCACAAGCTGGTGCAAGAAGTAGTGGGGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGACTCACCCGAAAAAATAATGCCTACTCAAACTGCTGATTTAGAGGAAGATGACATGTTGATTTCTAATCTACAACTATTTGAAGACAGTGATGGTGATTCGGTAGGGCCCTCTCAAAATGATTTAGATTTATCAGAGGCTATGGATGATGTGGACGAAAAGATTCCAATAAATAGAAAGGCTTACTCGGAATTGTTTCAGGCCATAATGAGTAGTCCAGGCTTATCTGTTCATGGCGTTCTGGATAAATGGGTGAAAGAAGGAAAGGATTTAAGCAAATCTGAGATATCAATAACCATGCTTAATCTCCGTAAAAGTCGACGTTATGGAAGGGCATTACAAGTAACAACAGTGAATGCGAATCATCCAAATTTCCGTCACCTTCTCCCCTCGTCAGAAGGCCATCACGCCGAAAAACTGCCGACACAAGTCGTTTGCTCGTCGGAAGATCAAAATACGATCACGAAGAGCAAAGAAGATAGATGA

Coding sequence (CDS)

ATGACTAATTGGTTTCACAACTTGATTCGTGGGCCTTCAGGACATGGTGTAGACAGATGCAGTCTTTCTTCACAAGCTGGTGCAAGAAGTAGTGGGGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGACTCACCCGAAAAAATAATGCCTACTCAAACTGCTGATTTAGAGGAAGATGACATGTTGATTTCTAATCTACAACTATTTGAAGACAGTGATGGTGATTCGGTAGGGCCCTCTCAAAATGATTTAGATTTATCAGAGGCTATGGATGATGTGGACGAAAAGATTCCAATAAATAGAAAGGCTTACTCGGAATTGTTTCAGGCCATAATGAGTAGTCCAGGCTTATCTGTTCATGGCGTTCTGGATAAATGGGTGAAAGAAGGAAAGGATTTAAGCAAATCTGAGATATCAATAACCATGCTTAATCTCCGTAAAAGTCGACGTTATGGAAGGGCATTACAAGTAACAACAGTGAATGCGAATCATCCAAATTTCCGTCACCTTCTCCCCTCGTCAGAAGGCCATCACGCCGAAAAACTGCCGACACAAGTCGTTTGCTCGTCGGAAGATCAAAATACGATCACGAAGAGCAAAGAAGATAGATGA

Protein sequence

MTNWFHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVTTVNANHPNFRHLLPSSEGHHAEKLPTQVVCSSEDQNTITKSKEDR

Homology

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BLAST of Lsi01G017740 vs. Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-18
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 1


Query: 21  SLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDSVG 80
           +LSS AG +S  EEDDLEDGFSEL+  +    + ++D +E        +L  D +     
Sbjct: 61  ALSSSAGTKSDQEEDDLEDGFSELEGSKSGQGSTSSDEDEG-------KLSADEE----- 120

Query: 81  PSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKSEI 140
             + +LDL E   DV  K     K  SELF+ I+S+PGLS+   LDKWV+EG ++++ EI
Sbjct: 121 -EEEELDLIET--DVSRKTV--EKKQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEI 180

Query: 141 SITMLNLRKSRRYGRALQVT 161
           +  ML LR+ R YGRALQ++
Sbjct: 181 AKAMLQLRRRRMYGRALQMS 183

[Close]

BLAST of Lsi01G017740 vs. Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-15
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 19  RCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDS 78
           R SLSS AGA+++G++DDLED   +L +P++                      +  DG+ 
Sbjct: 64  RRSLSSDAGAKTTGDDDDLEDKNVDLATPDETSS-------------------DSEDGEE 123

Query: 79  VGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKS 138
               + D++ +E    V E      K  SE+F+AI+S  GLSV   LDKWV++GKD ++ 
Sbjct: 124 FSGDEGDIEGAELELHVPES-----KRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRK 181

Query: 139 EISITMLNLRKSRRYGRALQVT 161
           E    ML LRK R +GRALQ+T
Sbjct: 184 EFESAMLQLRKRRMFGRALQMT 181

[Close]

BLAST of Lsi01G017740 vs. Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-09
Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 1


Query: 22  LSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDSVGP 81
           LSS A A+  G+E   E+   EL   E+ +P  + D+ E   ++ +  LFE      +G 
Sbjct: 71  LSSIADAKDKGDEVVREE---ELSESEEAVPV-SGDVPEG--VVDDDSLFEPE----LGS 130

Query: 82  SQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKSEIS 141
             +DL++ E       K P  ++  SEL+++I++    SV  VL+KWVKEGKDLS++E++
Sbjct: 131 DNDDLEIEEKHSKDGGK-PTKKRGQSELYESIVAYK--SVKHVLEKWVKEGKDLSQAEVT 190

Query: 142 ITMLNLRKSRRYGRALQV 160
           + + NLRK + Y   LQ+
Sbjct: 191 LAIHNLRKRKSYAMCLQL 195

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BLAST of Lsi01G017740 vs. TrEMBL
Match: A0A061EW28_THECC (Pentatricopeptide repeat-containing protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_024110 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.9e-29
Identity = 76/158 (48.10%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEE--DD 64
           F++         V RC LSSQAGA SSGEED+LEDGFSEL++P      +    ++  +D
Sbjct: 52  FYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKKENCSAQDKAED 111

Query: 65  MLISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVH 124
            LIS+ +L  D + D    ++N+L+LSE   D+ +K    R+  SELF+A++++PGLSVH
Sbjct: 112 GLISDPELSGDEE-DIEETAKNELELSEDETDLSDKKSSTRRIVSELFKAVIAAPGLSVH 171

Query: 125 GVLDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
            VLDKW++EGK  +++EIS+ MLNLRK R YGRALQ++
Sbjct: 172 KVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLS 208

[Close]

BLAST of Lsi01G017740 vs. TrEMBL
Match: A0A061EWQ2_THECC (Pentatricopeptide repeat-containing protein isoform 1 OS=Theobroma cacao GN=TCM_024110 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.9e-29
Identity = 76/158 (48.10%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEE--DD 64
           F++         V RC LSSQAGA SSGEED+LEDGFSEL++P      +    ++  +D
Sbjct: 54  FYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKKENCSAQDKAED 113

Query: 65  MLISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVH 124
            LIS+ +L  D + D    ++N+L+LSE   D+ +K    R+  SELF+A++++PGLSVH
Sbjct: 114 GLISDPELSGDEE-DIEETAKNELELSEDETDLSDKKSSTRRIVSELFKAVIAAPGLSVH 173

Query: 125 GVLDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
            VLDKW++EGK  +++EIS+ MLNLRK R YGRALQ++
Sbjct: 174 KVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLS 210

[Close]

BLAST of Lsi01G017740 vs. TrEMBL
Match: M5WFR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027225mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 1


Query: 17  VDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDG 76
           VDR S SSQAGA SSGE+DDLEDGFSEL++    +P+  A   ED+ LIS  +L ED + 
Sbjct: 62  VDRRSFSSQAGAESSGEKDDLEDGFSELET----LPSAEASQHEDE-LISEPELSEDEE- 121

Query: 77  DSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLS 136
             V PSQ++L+LSE   D  EK    ++  SELF+AI++ P  SVHG LDKWVK G DL+
Sbjct: 122 -EVEPSQHELELSENGADSIEKRSPRKRNVSELFKAILAFPAFSVHGALDKWVKAGNDLN 181

Query: 137 KSEISITMLNLRKSRRYGRALQVT 161
           ++EIS+ M N RK + +GRALQ++
Sbjct: 182 RAEISLAMFNFRKRQMFGRALQLS 198

[Close]

BLAST of Lsi01G017740 vs. TrEMBL
Match: A0A0D2NRM3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G225900 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 74/156 (47.44%), Postives = 94/156 (60.26%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDML 64
           F+      S   V RC LSSQAGA SSGEEDDLEDGFSEL++          D    D  
Sbjct: 58  FYRSTHASSNFSVWRCGLSSQAGAESSGEEDDLEDGFSELETAGN--SENKRDHIAKDAT 117

Query: 65  ISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGV 124
              L   ++   D    + N+L+L  A  DV +K    R+  S LF+A++S+PGLS H V
Sbjct: 118 EDGLDSDQEFSVDVEETASNELELFGAETDVSDKKSSGRRTTSGLFKALISAPGLSTHKV 177

Query: 125 LDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
           LDKW++EGK LS++EIS   LNLRK R YGRALQ++
Sbjct: 178 LDKWLEEGKSLSRAEISSATLNLRKRRMYGRALQLS 211

[Close]

BLAST of Lsi01G017740 vs. TrEMBL
Match: A0A0D2QAJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G225900 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 74/156 (47.44%), Postives = 94/156 (60.26%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDML 64
           F+      S   V RC LSSQAGA SSGEEDDLEDGFSEL++          D    D  
Sbjct: 55  FYRSTHASSNFSVWRCGLSSQAGAESSGEEDDLEDGFSELETAGN--SENKRDHIAKDAT 114

Query: 65  ISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGV 124
              L   ++   D    + N+L+L  A  DV +K    R+  S LF+A++S+PGLS H V
Sbjct: 115 EDGLDSDQEFSVDVEETASNELELFGAETDVSDKKSSGRRTTSGLFKALISAPGLSTHKV 174

Query: 125 LDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
           LDKW++EGK LS++EIS   LNLRK R YGRALQ++
Sbjct: 175 LDKWLEEGKSLSRAEISSATLNLRKRRMYGRALQLS 208

[Close]

BLAST of Lsi01G017740 vs. TAIR10
Match: AT1G80270.1 (AT1G80270.1 PENTATRICOPEPTIDE REPEAT 596)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 1


Query: 21  SLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDSVG 80
           +LSS AG +S  EEDDLEDGFSEL+  +    + ++D +E        +L  D +     
Sbjct: 61  ALSSSAGTKSDQEEDDLEDGFSELEGSKSGQGSTSSDEDEG-------KLSADEE----- 120

Query: 81  PSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKSEI 140
             + +LDL E   DV  K     K  SELF+ I+S+PGLS+   LDKWV+EG ++++ EI
Sbjct: 121 -EEEELDLIET--DVSRKTV--EKKQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEI 180

Query: 141 SITMLNLRKSRRYGRALQVT 161
           +  ML LR+ R YGRALQ++
Sbjct: 181 AKAMLQLRRRRMYGRALQMS 183

[Close]

BLAST of Lsi01G017740 vs. TAIR10
Match: AT1G15480.1 (AT1G15480.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 19  RCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDS 78
           R SLSS AGA+++G++DDLED   +L +P++                      +  DG+ 
Sbjct: 64  RRSLSSDAGAKTTGDDDDLEDKNVDLATPDETSS-------------------DSEDGEE 123

Query: 79  VGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKS 138
               + D++ +E    V E      K  SE+F+AI+S  GLSV   LDKWV++GKD ++ 
Sbjct: 124 FSGDEGDIEGAELELHVPES-----KRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRK 181

Query: 139 EISITMLNLRKSRRYGRALQVT 161
           E    ML LRK R +GRALQ+T
Sbjct: 184 EFESAMLQLRKRRMFGRALQMT 181

[Close]

BLAST of Lsi01G017740 vs. TAIR10
Match: AT3G15590.1 (AT3G15590.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 1


Query: 22  LSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDGDSVGP 81
           LSS A A+  G+E   E+   EL   E+ +P  + D+ E   ++ +  LFE      +G 
Sbjct: 71  LSSIADAKDKGDEVVREE---ELSESEEAVPV-SGDVPEG--VVDDDSLFEPE----LGS 130

Query: 82  SQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLSKSEIS 141
             +DL++ E       K P  ++  SEL+++I++    SV  VL+KWVKEGKDLS++E++
Sbjct: 131 DNDDLEIEEKHSKDGGK-PTKKRGQSELYESIVAYK--SVKHVLEKWVKEGKDLSQAEVT 190

Query: 142 ITMLNLRKSRRYGRALQV 160
           + + NLRK + Y   LQ+
Sbjct: 191 LAIHNLRKRKSYAMCLQL 195

[Close]

BLAST of Lsi01G017740 vs. NCBI nr
Match: gi|470135586|ref|XP_004303594.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 146.0 bits (367), Expect = 7.4e-32
Identity = 78/150 (52.00%), Postives = 108/150 (72.00%), Query Frame = 1


Query: 13  SGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPE--KIMPTQTADLEEDDMLISNLQL 72
           S   VDRCSLSSQAG  SSGEEDDLEDGFS+L++P   +++    A+ E +D L+S  ++
Sbjct: 65  SKFSVDRCSLSSQAGTESSGEEDDLEDGFSKLETPPTAEVVQASNANDENEDELVSGPEI 124

Query: 73  FEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVK 132
            +D     + PSQN+L+LSE   D+++K+   R+  S LF+AI+  PG SVH  LDKWVK
Sbjct: 125 SDDEA--DIEPSQNELELSEIETDLNDKLSPRRRDVSALFKAILEFPGFSVHSALDKWVK 184

Query: 133 EGKDLSKSEISITMLNLRKSRRYGRALQVT 161
           EG DLS++EIS+T +NLR+ R +GRALQ++
Sbjct: 185 EGNDLSRAEISLTKINLRRRRMFGRALQLS 212

[Close]

BLAST of Lsi01G017740 vs. NCBI nr
Match: gi|590634360|ref|XP_007028355.1| (Pentatricopeptide repeat-containing protein isoform 1 [Theobroma cacao])

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-29
Identity = 76/158 (48.10%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEE--DD 64
           F++         V RC LSSQAGA SSGEED+LEDGFSEL++P      +    ++  +D
Sbjct: 54  FYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKKENCSAQDKAED 113

Query: 65  MLISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVH 124
            LIS+ +L  D + D    ++N+L+LSE   D+ +K    R+  SELF+A++++PGLSVH
Sbjct: 114 GLISDPELSGDEE-DIEETAKNELELSEDETDLSDKKSSTRRIVSELFKAVIAAPGLSVH 173

Query: 125 GVLDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
            VLDKW++EGK  +++EIS+ MLNLRK R YGRALQ++
Sbjct: 174 KVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLS 210

[Close]

BLAST of Lsi01G017740 vs. NCBI nr
Match: gi|590634363|ref|XP_007028356.1| (Pentatricopeptide repeat-containing protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-29
Identity = 76/158 (48.10%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 5   FHNLIRGPSGHGVDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEE--DD 64
           F++         V RC LSSQAGA SSGEED+LEDGFSEL++P      +    ++  +D
Sbjct: 52  FYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKKENCSAQDKAED 111

Query: 65  MLISNLQLFEDSDGDSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVH 124
            LIS+ +L  D + D    ++N+L+LSE   D+ +K    R+  SELF+A++++PGLSVH
Sbjct: 112 GLISDPELSGDEE-DIEETAKNELELSEDETDLSDKKSSTRRIVSELFKAVIAAPGLSVH 171

Query: 125 GVLDKWVKEGKDLSKSEISITMLNLRKSRRYGRALQVT 161
            VLDKW++EGK  +++EIS+ MLNLRK R YGRALQ++
Sbjct: 172 KVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLS 208

[Close]

BLAST of Lsi01G017740 vs. NCBI nr
Match: gi|645270967|ref|XP_008240694.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Prunus mume])

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 77/144 (53.47%), Postives = 102/144 (70.83%), Query Frame = 1


Query: 17  VDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDG 76
           VDR S SSQAGA SSGE+DDLEDGFSEL++    +P+  A   ED+ LIS  +L ED + 
Sbjct: 70  VDRRSFSSQAGAESSGEKDDLEDGFSELET----LPSAEASQHEDE-LISEPELSEDEE- 129

Query: 77  DSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLS 136
             V PSQ++L+LSE   D  EK    ++  SELF+AI++ PG SVHG LDKWVK G DL+
Sbjct: 130 -EVEPSQHELELSENGADSIEKRSPRKRNVSELFKAILAFPGFSVHGALDKWVKAGNDLN 189

Query: 137 KSEISITMLNLRKSRRYGRALQVT 161
           ++EIS+ M + RK + +GRALQ++
Sbjct: 190 RAEISLAMFHFRKRQMFGRALQLS 206

[Close]

BLAST of Lsi01G017740 vs. NCBI nr
Match: gi|595818864|ref|XP_007204421.1| (hypothetical protein PRUPE_ppa1027225mg [Prunus persica])

HSP 1 Score: 130.6 bits (327), Expect = 3.2e-27
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 1


Query: 17  VDRCSLSSQAGARSSGEEDDLEDGFSELDSPEKIMPTQTADLEEDDMLISNLQLFEDSDG 76
           VDR S SSQAGA SSGE+DDLEDGFSEL++    +P+  A   ED+ LIS  +L ED + 
Sbjct: 62  VDRRSFSSQAGAESSGEKDDLEDGFSELET----LPSAEASQHEDE-LISEPELSEDEE- 121

Query: 77  DSVGPSQNDLDLSEAMDDVDEKIPINRKAYSELFQAIMSSPGLSVHGVLDKWVKEGKDLS 136
             V PSQ++L+LSE   D  EK    ++  SELF+AI++ P  SVHG LDKWVK G DL+
Sbjct: 122 -EVEPSQHELELSENGADSIEKRSPRKRNVSELFKAILAFPAFSVHGALDKWVKAGNDLN 181

Query: 137 KSEISITMLNLRKSRRYGRALQVT 161
           ++EIS+ M N RK + +GRALQ++
Sbjct: 182 RAEISLAMFNFRKRQMFGRALQLS 198

The following BLAST results are available for this feature:

BLAST of Lsi01G017740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP135_ARATH	6.0e-18	42.86	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidop...	[more]
PPR44_ARATH	4.8e-15	38.03	Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidop...	[more]
PP234_ARATH	2.3e-09	35.51	Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidop...	[more]

BLAST of Lsi01G017740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EW28_THECC	6.9e-29	48.10	Pentatricopeptide repeat-containing protein isoform 2 (Fragment) OS=Theobroma ca...	[more]
A0A061EWQ2_THECC	6.9e-29	48.10	Pentatricopeptide repeat-containing protein isoform 1 OS=Theobroma cacao GN=TCM_...	[more]
M5WFR3_PRUPE	2.2e-27	53.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027225mg PE=4 SV=1	[more]
A0A0D2NRM3_GOSRA	1.8e-24	47.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G225900 PE=4 SV=1	[more]
A0A0D2QAJ6_GOSRA	1.8e-24	47.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G225900 PE=4 SV=1	[more]

BLAST of Lsi01G017740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80270.1	3.4e-19	42.86	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G15480.1	2.7e-16	38.03	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15590.1	1.3e-10	35.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi01G017740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470135586\|ref\|XP_004303594.1\|	7.4e-32	52.00	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-...	[more]
gi\|590634360\|ref\|XP_007028355.1\|	9.9e-29	48.10	Pentatricopeptide repeat-containing protein isoform 1 [Theobroma cacao]	[more]
gi\|590634363\|ref\|XP_007028356.1\|	9.9e-29	48.10	Pentatricopeptide repeat-containing protein isoform 2, partial [Theobroma cacao]	[more]
gi\|645270967\|ref\|XP_008240694.1\|	2.4e-27	53.47	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-...	[more]
gi\|595818864\|ref\|XP_007204421.1\|	3.2e-27	53.47	hypothetical protein PRUPE_ppa1027225mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017740.1	Lsi01G017740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 21..56 score: 4.0E-15coord: 79..158 score: 4.0
None	No IPR available	PANTHER	PTHR24015:SF26	SUBFAMILY NOT NAMED	coord: 21..56 score: 4.0E-15coord: 79..158 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G017740	CmaCh03G001420	Cucurbita maxima (Rimu)	cmalsiB601
Lsi01G017740	CmaCh14G005070	Cucurbita maxima (Rimu)	cmalsiB229
Lsi01G017740	CmoCh03G001520	Cucurbita moschata (Rifu)	cmolsiB584
Lsi01G017740	MELO3C009752.2	Melon (DHL92) v3.6.1	lsimedB149
Lsi01G017740	Cla97C10G199170	Watermelon (97103) v2	lsiwmbB119
Lsi01G017740	Bhi03G002040	Wax gourd	lsiwgoB182
Lsi01G017740	Cp4.1LG03g08720	Cucurbita pepo (Zucchini)	cpelsiB489
Lsi01G017740	Cp4.1LG10g11200	Cucurbita pepo (Zucchini)	cpelsiB056
Lsi01G017740	CsGy3G035210	Cucumber (Gy14) v2	cgyblsiB152
Lsi01G017740	CsaV3_3G040080	Cucumber (Chinese Long) v3	cuclsiB182

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi01G017740	Lsi03G016170	Bottle gourd (USVL1VR-Ls)	lsilsiB073

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G017740	Cucumber (Gy14) v1	cgylsiB067
Lsi01G017740	Cucumber (Gy14) v1	cgylsiB546
Lsi01G017740	Cucurbita maxima (Rimu)	cmalsiB791
Lsi01G017740	Cucurbita moschata (Rifu)	cmolsiB217
Lsi01G017740	Cucurbita moschata (Rifu)	cmolsiB779
Lsi01G017740	Cucurbita pepo (Zucchini)	cpelsiB048
Lsi01G017740	Cucurbita pepo (Zucchini)	cpelsiB391
Lsi01G017740	Wild cucumber (PI 183967)	cpilsiB166
Lsi01G017740	Wild cucumber (PI 183967)	cpilsiB248
Lsi01G017740	Cucumber (Chinese Long) v2	culsiB167
Lsi01G017740	Cucumber (Chinese Long) v2	culsiB249
Lsi01G017740	Melon (DHL92) v3.5.1	lsimeB144
Lsi01G017740	Melon (DHL92) v3.5.1	lsimeB158
Lsi01G017740	Watermelon (Charleston Gray)	lsiwcgB121
Lsi01G017740	Watermelon (Charleston Gray)	lsiwcgB144
Lsi01G017740	Watermelon (97103) v1	lsiwmB130
Lsi01G017740	Watermelon (97103) v1	lsiwmB154
Lsi01G017740	Cucumber (Gy14) v2	cgyblsiB237
Lsi01G017740	Melon (DHL92) v3.6.1	lsimedB165
Lsi01G017740	Silver-seed gourd	carlsiB194
Lsi01G017740	Silver-seed gourd	carlsiB224
Lsi01G017740	Silver-seed gourd	carlsiB527
Lsi01G017740	Cucumber (Chinese Long) v3	cuclsiB273
Lsi01G017740	Watermelon (97103) v2	lsiwmbB141