Lsi01G014710 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G014710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 12797374 .. 12797661 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCGGCATTTATTGTAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTTTCATGGTGTTGAGTGTAGTTTGCCGGTGGAAAGCTGGTGGCAGTACCAGCGGAGAAGGTGGTCATTTCGGCGGCGCCCATGATGGAGGTGGAGGTGCGGATGGGGGTTATGATGGTGGAGGCTATGATGGTGGGGGTTATGATGGTGGAGGTGGCGGTGGTGGTGGTGGTGGTGGGGGCAATGATGGTGGCGGGGGAGGTGGCGGAGGGGGCGGCGGTAGCTCTGCCTGTTGA

mRNA sequence

ATGGTTGCGGCATTTATTGTAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTTTCATGGTGTTGAGTGTAGTTTGCCGGTGGAAAGCTGGTGGCAGTACCAGCGGAGAAGGTGGTCATTTCGGCGGCGCCCATGATGGAGGTGGAGGTGCGGATGGGGGTTATGATGGTGGAGGCTATGATGGTGGGGGTTATGATGGTGGAGGTGGCGGTGGTGGTGGTGGTGGTGGGGGCAATGATGGTGGCGGGGGAGGTGGCGGAGGGGGCGGCGGTAGCTCTGCCTGTTGA

Coding sequence (CDS)

ATGGTTGCGGCATTTATTGTAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTTTCATGGTGTTGAGTGTAGTTTGCCGGTGGAAAGCTGGTGGCAGTACCAGCGGAGAAGGTGGTCATTTCGGCGGCGCCCATGATGGAGGTGGAGGTGCGGATGGGGGTTATGATGGTGGAGGCTATGATGGTGGGGGTTATGATGGTGGAGGTGGCGGTGGTGGTGGTGGTGGTGGGGGCAATGATGGTGGCGGGGGAGGTGGCGGAGGGGGCGGCGGTAGCTCTGCCTGTTGA

Protein sequence

MVAAFIVIPVVFLSVCVVFMVLSVVCRWKAGGSTSGEGGHFGGAHDGGGGADGGYDGGGYDGGGYDGGGGGGGGGGGGNDGGGGGGGGGGGSSAC
Homology
[Close]
BLAST of Lsi01G014710 vs. NCBI nr
Match: gi|700199139|gb|KGN54297.1| (hypothetical protein Csa_4G297470 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1 

Query: 3  AAFIVIPVVFLSVCVVFMVLSVVCRWKAGGSTSGEGGHFGGAHDGGGGADGGYDGGG--- 62
          AAFI+IPVVFLS+CVVF VLS++CRW  GGS++G+G HFGGA   GGG DGG DGGG   
Sbjct: 4  AAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGG 63

Query: 63 YDGGG--YDGGGGGGGGGGGGNDGGGGGGGGGGG 92
          YDGGG  YDGGGG GGGGGGG DGGGGGGGGGGG
Sbjct: 64 YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGG 97

The following BLAST results are available for this feature:
BLAST of Lsi01G014710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G014710 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi01G014710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G014710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199139|gb|KGN54297.1|3.1e-0975.53hypothetical protein Csa_4G297470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G014710.1Lsi01G014710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G014710Watermelon (97103) v2lsiwmbB140
Lsi01G014710Watermelon (97103) v2lsiwmbB146
Lsi01G014710Wax gourdlsiwgoB169
Lsi01G014710Bottle gourd (USVL1VR-Ls)lsilsiB077
Lsi01G014710Cucumber (Gy14) v1cgylsiB059
Lsi01G014710Cucurbita maxima (Rimu)cmalsiB601
Lsi01G014710Cucurbita maxima (Rimu)cmalsiB642
Lsi01G014710Cucurbita maxima (Rimu)cmalsiB644
Lsi01G014710Cucurbita maxima (Rimu)cmalsiB786
Lsi01G014710Cucurbita moschata (Rifu)cmolsiB587
Lsi01G014710Cucurbita moschata (Rifu)cmolsiB630
Lsi01G014710Cucurbita moschata (Rifu)cmolsiB631
Lsi01G014710Cucurbita moschata (Rifu)cmolsiB774
Lsi01G014710Cucurbita pepo (Zucchini)cpelsiB048
Lsi01G014710Wild cucumber (PI 183967)cpilsiB247
Lsi01G014710Wild cucumber (PI 183967)cpilsiB255
Lsi01G014710Wild cucumber (PI 183967)cpilsiB345
Lsi01G014710Cucumber (Chinese Long) v2culsiB248
Lsi01G014710Cucumber (Chinese Long) v2culsiB341
Lsi01G014710Melon (DHL92) v3.5.1lsimeB151
Lsi01G014710Watermelon (Charleston Gray)lsiwcgB142
Lsi01G014710Watermelon (Charleston Gray)lsiwcgB148
Lsi01G014710Watermelon (97103) v1lsiwmB152
Lsi01G014710Cucumber (Gy14) v2cgyblsiB236
Lsi01G014710Melon (DHL92) v3.6.1lsimedB129
Lsi01G014710Melon (DHL92) v3.6.1lsimedB158
Lsi01G014710Silver-seed gourdcarlsiB503
Lsi01G014710Silver-seed gourdcarlsiB526
Lsi01G014710Cucumber (Chinese Long) v3cuclsiB272
Lsi01G014710Cucumber (Chinese Long) v3cuclsiB365