Lsi01G014690 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G014690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 12778221 .. 12778502 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

mRNA sequence

ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

Coding sequence (CDS)

ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

Protein sequence

MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGDAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC
BLAST of Lsi01G014690 vs. TrEMBL
Match: A0A0A0KXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297480 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 1

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGG-HAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSSGG HAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC 94
              H A  H GGGGH CGGG GGG  GG SSAC
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSAC 87

BLAST of Lsi01G014690 vs. TrEMBL
Match: A0A0A0L128_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-06
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 1

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGD 60
          MV+ AFIIIPVVFLS+CVV   L +LCRWT GGSS+G  AHF GA   GG        G+
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGG----GDDGGE 60

Query: 61 AGGHHAAHHFGGGGHDCGGGGGGGGFGGG 90
           GG    +  GGGG+D GGG GGGG GGG
Sbjct: 61 DGGGGGGYDGGGGGYDGGGGSGGGGGGGG 85

BLAST of Lsi01G014690 vs. NCBI nr
Match: gi|700199140|gb|KGN54298.1| (hypothetical protein Csa_4G297480 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 1

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGG-HAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSSGG HAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC 94
              H A  H GGGGH CGGG GGG  GG SSAC
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSAC 87

BLAST of Lsi01G014690 vs. NCBI nr
Match: gi|778697672|ref|XP_011654372.1| (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 1

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGG-HAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSSGG HAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSA 93
              H A  H GGGGH CGGG GGG  GG SSA
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSA 86

BLAST of Lsi01G014690 vs. NCBI nr
Match: gi|700199139|gb|KGN54297.1| (hypothetical protein Csa_4G297470 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-06
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 1

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGD 60
          MV+ AFIIIPVVFLS+CVV   L +LCRWT GGSS+G  AHF GA   GG        G+
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGG----GDDGGE 60

Query: 61 AGGHHAAHHFGGGGHDCGGGGGGGGFGGG 90
           GG    +  GGGG+D GGG GGGG GGG
Sbjct: 61 DGGGGGGYDGGGGGYDGGGGSGGGGGGGG 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXN6_CUCSA2.3e-0861.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297480 PE=4 SV=1[more]
A0A0A0L128_CUCSA6.4e-0658.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700199140|gb|KGN54298.1|3.4e-0861.70hypothetical protein Csa_4G297480 [Cucumis sativus][more]
gi|778697672|ref|XP_011654372.1|3.7e-0761.29PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus][more]
gi|700199139|gb|KGN54297.1|9.2e-0658.43hypothetical protein Csa_4G297470 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G014690.1Lsi01G014690.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None