Lsi01G014580 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G014580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 12702333 .. 12703302 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTCTAGTATTGATTAGGAATAAACGATATAATTAGATAAATTTTAGGAATAAAAAATATATAATTATATAAATTGGTAAAGAAAATAAATGGTGCAAGTGCAAAAAGATATAATTGTATAAACTTTATAAACCAATAATAAAAATTTTGAAATCAATAACAAATTAAAATAAATAATCTATAACCATACGTACTTGTTTTCTTAGGCCTTTTTTACAATGATTTTCATCTTTTATAACCAAACATACAAATTCTATTTTGTTTTTATTTTTTGTTTTTTGTTTTTTATTTTTTATTTTTTATTTTTAAAACCAATCGATAAAAGTAGTATTTGTAAACTTAAATTTTCAAAATCTGAAAACAAAAAACCAAATGGTTATCAATAGAGTCTTAACGTTTTTTTGTTCCCAAAAAATAGAAAAAAAAAAAAAAGCTTATATATATATATATATATATATATATATATATATAGTAAGAACCTTCCTAGAGTAAATTAAAGTCCTAATCTTTATTTTATTATCTAATTTTGAGAATAATTAAAAATTGAAGACTTGTTCTTCTTCCCACTCCTAATTAATTATATTATGTGCAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

mRNA sequence

ATGAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

Coding sequence (CDS)

ATGAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

Protein sequence

MRLQGSDIHVYKTLSLPSLCSVAVRNMNNPYYSYYSYGYPYPHQGYPKYQAVPSYYGGYTTTYHGQLHPYPYQGYPYPVATTNLPPPYNYYQQNNGTNTGGILASMLSSVTGNIGASLISSLFFN
Homology
[Close]
BLAST of Lsi01G014580 vs. TrEMBL
Match: A0A0A0KZN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296860 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-20
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYP-------YQG 86
           MNNPY  +YSYGYPYPHQGYPKY  Q VP   +Y  GYT   HG +HPY        YQ 
Sbjct: 1   MNNPY-GHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQA 60

Query: 87  YPYPVATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGNIG-ASLISSLFFN 126
           YPYP  +T L PP   YQQN  TN  GGILASMLSSV+GN   AS +SSLFFN
Sbjct: 61  YPYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFFN 112

[Close]
BLAST of Lsi01G014580 vs. NCBI nr
Match: gi|700199126|gb|KGN54284.1| (hypothetical protein Csa_4G296860 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYP-------YQG 86
           MNNPY  +YSYGYPYPHQGYPKY  Q VP   +Y  GYT   HG +HPY        YQ 
Sbjct: 1   MNNPY-GHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQA 60

Query: 87  YPYPVATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGNIG-ASLISSLFFN 126
           YPYP  +T L PP   YQQN  TN  GGILASMLSSV+GN   AS +SSLFFN
Sbjct: 61  YPYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFFN 112

[Close]
BLAST of Lsi01G014580 vs. NCBI nr
Match: gi|659069470|ref|XP_008450016.1| (PREDICTED: phospholipase D beta 1-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-08
Identity = 58/142 (40.85%), Postives = 67/142 (47.18%), Query Frame = 1 

Query: 27  MNNPYYSYYSYGYPYPHQ-GYPKYQAV--PSYYGGYT----------------------- 86
           MNNPY  YYS+GYPYPH+  YPKY+A   P    GYT                       
Sbjct: 1   MNNPY-GYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 87  -----------TTYHG--QLHPYP---YQGYP-YPVATTNLPPPYNYYQQNNGTNTGGIL 126
                       +YH     +PYP   YQGYP Y   TT  PP + Y  +  G+     L
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGS-----L 120

The following BLAST results are available for this feature:
BLAST of Lsi01G014580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G014580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZN9_CUCSA4.7e-2061.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296860 PE=4 SV=1[more]
BLAST of Lsi01G014580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G014580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199126|gb|KGN54284.1|6.7e-2061.06hypothetical protein Csa_4G296860 [Cucumis sativus][more]
gi|659069470|ref|XP_008450016.1|7.7e-0840.85PREDICTED: phospholipase D beta 1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G014580.1Lsi01G014580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G014580CsaV3_4G025350Cucumber (Chinese Long) v3cuclsiB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G014580Bottle gourd (USVL1VR-Ls)lsilsiB077
Lsi01G014580Cucumber (Gy14) v1cgylsiB059
Lsi01G014580Cucurbita maxima (Rimu)cmalsiB601
Lsi01G014580Cucurbita maxima (Rimu)cmalsiB642
Lsi01G014580Cucurbita maxima (Rimu)cmalsiB644
Lsi01G014580Cucurbita maxima (Rimu)cmalsiB786
Lsi01G014580Cucurbita moschata (Rifu)cmolsiB587
Lsi01G014580Cucurbita moschata (Rifu)cmolsiB630
Lsi01G014580Cucurbita moschata (Rifu)cmolsiB631
Lsi01G014580Cucurbita moschata (Rifu)cmolsiB774
Lsi01G014580Cucurbita pepo (Zucchini)cpelsiB048
Lsi01G014580Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G014580Wild cucumber (PI 183967)cpilsiB247
Lsi01G014580Wild cucumber (PI 183967)cpilsiB255
Lsi01G014580Wild cucumber (PI 183967)cpilsiB345
Lsi01G014580Cucumber (Chinese Long) v2culsiB248
Lsi01G014580Cucumber (Chinese Long) v2culsiB341
Lsi01G014580Melon (DHL92) v3.5.1lsimeB151
Lsi01G014580Watermelon (Charleston Gray)lsiwcgB142
Lsi01G014580Watermelon (Charleston Gray)lsiwcgB148
Lsi01G014580Watermelon (97103) v1lsiwmB152
Lsi01G014580Cucumber (Gy14) v2cgyblsiB236
Lsi01G014580Melon (DHL92) v3.6.1lsimedB129
Lsi01G014580Melon (DHL92) v3.6.1lsimedB158
Lsi01G014580Silver-seed gourdcarlsiB503
Lsi01G014580Silver-seed gourdcarlsiB526
Lsi01G014580Cucumber (Chinese Long) v3cuclsiB365
Lsi01G014580Watermelon (97103) v2lsiwmbB140
Lsi01G014580Watermelon (97103) v2lsiwmbB146
Lsi01G014580Wax gourdlsiwgoB169