Lsi01G013000 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G013000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZinc finger protein 593
Locationchr01 : 11288920 .. 11294618 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGAACATCACCCTAATAATGAATGAGAGGGAAGAAGATTGAAATTATAAATGACATCATGTAAAATTCAAAAGGTCTAAAAAGGTTTTAGCTTAACAATTATTAAATTAGGGTTTAAATTGATTTAAATTGATATTTTTACAAATAATAATTAAGAGGAAAAAAAAAGTTGCGCCTAAAATTGAGTAGACTGAGTCAATGCTACGACGTCGTTTTCTGCCGCTTATATATCTTACTCTCTCTTGTCTCATAAAAAAACTTTCCTTTGGTGGAACAACCACCAAATAAACCCTAAATTTTACTCCGATTCTGCCATAGTCGGGCTCTCAAGACTCGAAGAGAGAATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGATATCCTTCTTCTGACCCTCCGTTCATTGACTTTTTTTTCTTCTCTAATTCTTGTTCTGTTTTCGTTATGTTTGTGGATTTTCCTTAATTTGATGAATCGGTTAATCACGTGATGATATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGAGTATGTTCTTTACTTTGGTATTCTTTTTTACGACTTTATTCGAAATTCCTATAGAAAATTGTTGTAATCATCTTGAATTTAATTTAGAATTTAAATAAATGCATCGATTTTTATGGTTAGGGCTGAATATTTTTGTTGTGTTACTGAGGACTGAGATGTTGTGTAAAGTGTTATGATTTTTATCTTGAATGAAATTAGTAAGTACAATTTTGAAGTTCACTAATTACAATTGATTAATGGAATGGTTTCAGCCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGTGAGCTTAACCAATTTTTACCTCCATCATTTGTGTATTTAAGTTCATATATTTAAAAGAAATCCATCTCGTCTTCTCTTTGGAAACATGATTAAATGTTGAACACGTTCAGTTTTAACCTTATCAGCCTTCTTTTCTTTTATTCACGTTTTTAATTTGCCTAATTTAGTTGGTGCTTTGTGGATTTGTACGAATTTCACGTAATGAATTGAACTCTCTCTAGATTGTTGTGTGTGAAAGTATAAATTTGGAACTGGAGTTTTTCTTAATGCTGACTGAGTTTAAATTCCTAAAGTTTCCTCGCATCTTAATTTGTTATAAAGACGGCTTAAGTGAAAACTAATTTGAATTTCCAGTGGAATTTGAACTAAAAATCTTTTATTGTGTTACTCTAATTACATCCATTTGTCTAAGAGATCATGGGTTCAATCCATGGTGGTCACCTACCTAGGAATAAACGAGTTTCCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTCTCCCGTGAGATAAGTCGAGGCGCGTAAGCTGGCCCGGACACTCACGGATATCAAAAAAAAAAATTACATCCATTTGTAGCCATTGCCCTTAGATTCTCTGTAATATTTGGTTTCATTTGATTGTGAGATATGAGGTCAGTATAATTGTATTAAAGAAGAATATTTACGTTTTTAATTAGCCTACTTTAGTTGGTTCTTTGTGGGTCAGTATGATTGTATTAAAGAAGTTAGTATGATTGTATTAAAAGAAGAATATTTGAATTGCAACTGTTAACAATGTTCCTGATCCATGCCCCTTAGATTCTCTATAATACTTGATTTAATTTGATTTTTAGATATGAAGTTAGTATGATTGAATGAAAGAAGAATATTTGAATTGCAACTGTTAACAGTGTTCCTGATCGATGCCCCCCTTAGATTCTCTACAATACTTGATTTATTTTGATTTTGAGATATGAAGTTAGTATGATTGTATGAAAGAAGAATATTTGAATGGCAACTGTTCACAATGTTCCTGATTCATGCCCCTTAGATTCTTTATAATACTTGATTTAATTTGATTTTGAGATATGAAGTTAGTATGATTGTATGAAAGAAGAATATTTGAATGGCAACTGTTCACAATGTTCCTGATCCATGCCCCTTAGATTCTCTATAATACTTGATTTAATTTGATTTTGAGATATGAAGTTAGTATGATTGTATGAAAGAAGAATATTTGAATGGCAACTGTTCACAATGTTCCTGATCCATGCCACTTAGATTCTCTATAATACTTGATTTAATTTGATTTTGAGATATGAAGTTAGTATGATTGTATGAAAGAAGAATATTTGAATTGCAACTGTTAACAATGTTCCTGATCCACAACGACGACAATGTTGCAGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGAGCTCATTAATTATTATACAACTTAAACATTTTGGGTGTTGTAAAGAGCTTAGAGTGAGTTTTGTTTATCATTTAACTAACAAGATCAATTTTGTCATATACTATTACTGGTCGTGTATTTTATTCGCAGAGTTCTTTTTATCAATTAATTTTAGCTTCATATTTTACACCAACTTATAATCTGGTTAAAGCATGTTCCTCCGATCAAGAAGTTGATCACATTTAGTGTTGAATTCAAAAAGGAATTTATAAGTATCTCTACATATTTAGTTTCGAACCACTAGTTGCCTCAAACATGTGACCTCCCATTTAAATTAGATAGGCACAACCAGCTGGGCTAAGAATCCTCTTCGAAATTATACCTAAACATTTGATCTAAATAATATCGGCTGGTTTCGAGTTTATTCGATTTGTATAAAATCCGAAACCGACCAAATTTCATTGGATTTTCCTTTACAAAAACTGTAACCACCAAGCCGAATAGGTTACAAATCGATTTCTGTCTGTTTGAGTGGTTTTTTCAATTTTGGTTTTTTACCTTGCACCCCTACTATGCAATAAAGATTATATAGTGAAAATGGTTCCTTCAAAATTGTTTGAGACAATTTTGAGATTATAGAGAGTAGTAGTGCTAGTTTACAAATTTTAGCTGTTCAGGATTTGCTAGTGTAACTCTTGAAACAAGTCCAAGAAGGAATAAATTTGTTCATATGTATACAAAGTACCATCCAACATTGAATGCTACAACAAGATCAACAATTATAAACTTAAAAAGAAACTTAAAACTAATTATTGCAAATATAAGGATGCTATTCAACAAATGCAAGAAATTAAAACTTTCAAACGGGATAACACCGATTCAATTCTCACTCAATACAAAGATTGCCCTAAAATTACTCTTCTAATTAATCACAAAGAACAGTTAAAACATATTCACAAACATACTCTTTATGGCTCTTATCATATACCCAAGCATATATCTCACTTTATCGAAATTAGGGGCACAATGGTCAAAATCATGTGGAGAAAACATTTCAAAATACAACTAATTCATGAGTTTGTGGATAAAAATATTTCAGAAAGTTTGTCCAAAACACACCAAATATTTCAGAAATTTTGTCTAAAACATACTCAATTTACCAACTAGATTCCAGTCCATATATGGATTTAAACTTCTTATCTCAATAAAAGAAGTATATGTTTGGGAAAAACCTTACACTACTACGGCAAGAATAAATAGAAAAATAACGGAGAAATTAAAATAAAGCAATGAAACTGAAAATGAGATTGTGAGACATGAAAACGATGAGAAAGATGGTTGGATTGAAAACTGTTGGAATGAGTTTTGTATTACAAATCGGACCCAAAACGTTCAATTCAAACATGGATTTTGGATTACATTACATTTCCATCCTCAAAGTATTTCAAATTGGAATGATTTAAACCAAAGACGCATAGGCTACTTTTTTTAATGCATGAAGCTCATCATTTCCTTGAACTTAATTTTCAATGTTAAACAACTACCCTTCTAATATTTTGTCAAAATCCAATAATACATACAAATTAATGTCAAGTTATATCCACTCTAGGTAGTCAATAAAATTATATTTTAAATTTCATAAAAATCCAAACAATACATTATAAAATCCCACTATCTTTTGCCTTAGCTTTATTGTGAAGGCACTTCCCTCTTTTGCTGGCCTATTTTGGCTGCTTCCCATTATCAAGGATTCCCTCTCTTTTTTGCCTTTAAATAAATTTTAAAACAATCAACATGATGATCATCTATTCAAAACTCCAATCTTCCCATTTGTCATCATCATCCAAACTTTTCATCTCACTTAAATTCCTAATATATATATAATTGGTTAGTATATTCATTGTGAATCATAACAAAATATGTGTTTGGTCCCTGAGTTTTTAAAATATACTTTTTAGTCCTCGAGTTTTTAACAATAGATGTATTTGATCTCTGAAATTTTAAAATATACCTTTTTAGTCTCCAAATTTTTAAAAATATGTTTAAAACTAAAAGTCCTTGAAATATATTTATCATTTAGAATTAAAAATATGATTAAAAATAATAATTTTAGAGAGGAGGTAATTTTTTTTAAAATAATAAAAAAAAGAAGCTTAGTGCAGTGACCTTTTTTAAAACCTTTTAAACTAAAAATGTATATTTTGAAAATTTAGGGAACAAATGTATCTGTTCTAAAAAATTCAAGGATCAAACACACATATTATTCATAACTCGAAGATTAATAAAGTAATTTTTCCTTATATTTTTGGTTAGATAAATTTTCAACCACACCATGTGAGAAAATACATTGGTTTAACTTCATTTGATTTTATATATTTGCGTTATTTTTTTAAAAAAAAATTGTTAAATTGAAAAATTATTTGAGCTAATGTCTATCAAGCTCTAAACACTAGAGATAAGATATTATATGATATCTTGGTGAGATAAAATGAATATAATATGTTTAGAAAATTAAAAAGAATATATTAGTTGAACTTAGGATATGAAATCATTTGCATGGTTTATTAATTAATGAGAGACAGCTAGAAATTTAGTTCATCTATAAATAATAATCCAAGAAAAAAGAATAAACTTCTTAAATTAATTATACGTTTAATGCATGTATAGTTCAACTAACCTGTGTTAACGAATAAGAGATATAATTTGAAATCTCAATTTTCTCATAATTTTATTTATTTATTTAATTAAAAAATAAAAAGAGAAAATAGTGTGAATAAGAAAATTAATATATTATGAATAAGAAAGCAAATAATTAAACACAAAGCATGGGTCTTTCAACAATAGTACATGAATGTCTCTTCGCTCTTGTAATTTTCATCAAATGAAAAATTATGGTTATCATTATTATTATTATTATTATTACTAATCAGCCTATTAATTTCTTCTAAACTGTATTCTAATGGAGTTTCTTCTTTCCACACCCCACCTTGTTTCTCACTACACCCACCCTCCTTTTTCATTACACCATGGAATTTTCCATTTTGGTCATATTCCATTTCTCCTCCGCCGTAGCTGAGGTGGTTGCCGCCTGAACTTCCGTCGGAAGAGCTGCATCCGGCCGCCTGATCCCCTCCAAATGAAAGGATATTTTCTTGTATTTGATCATAATAATAATAATAATTTGGCTGCACCAATTGCATATTGCTATTATTGCAGCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG

mRNA sequence

CCGAACATCACCCTAATAATGAATGAGAGGGAAGAAGATTGAAATTATAAATGACATCATGTAAAATTCAAAAGGTCTAAAAAGGTTTTAGCTTAACAATTATTAAATTAGGGTTTAAATTGATTTAAATTGATATTTTTACAAATAATAATTAAGAGGAAAAAAAAAGTTGCGCCTAAAATTGAGTAGACTGAGTCAATGCTACGACGTCGTTTTCTGCCGCTTATATATCTTACTCTCTCTTGTCTCATAAAAAAACTTTCCTTTGGTGGAACAACCACCAAATAAACCCTAAATTTTACTCCGATTCTGCCATAGTCGGGCTCTCAAGACTCGAAGAGAGAATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG

Coding sequence (CDS)

ATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG

Protein sequence

MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAISEMGSPPYAAVEKLGIN
Homology
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BLAST of Lsi01G013000 vs. Swiss-Prot
Match: ZN593_XENTR (Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-13
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 7   HRSVKKRRYSH--KTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCL 66
           H+S KK+  S   KT RR K L    D ++ ++ KP+  + L    +D  LPG  Q+YCL
Sbjct: 10  HKSDKKKNISKLWKTKRRVKDL----DQIHHDM-KPENAKLLLNQEIDYQLPGNAQHYCL 69

Query: 67  HCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG 108
           HC RYF ++    EHFKTK H++R+K +    P+TQ +A+ AAGMG
Sbjct: 70  HCSRYFVDLKTLKEHFKTKVHKRRLKQLR-EEPYTQEEAERAAGMG 109

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BLAST of Lsi01G013000 vs. Swiss-Prot
Match: BUD20_YEAST (Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD20 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 14  RYS---HKTARRTKFLVKGDDMVYDEL-TKPDVERPL--PVDEDLPGMGQYYCLHCDRYF 73
           RYS   +KT RRT+ L    D++Y++L TK  V++ L  P+DE  PG+GQ+YC+HC +Y 
Sbjct: 3   RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 62

Query: 74  ANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAISEMGSPPYA 133
                   H K K H++RVK + G  P+TQ  +D AAG  +     ++  I++   P   
Sbjct: 63  ETAIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNLNKFLNRVQEITQSVGPEKE 122

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BLAST of Lsi01G013000 vs. Swiss-Prot
Match: BUD20_SCHPO (Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud20 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-11
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = 1 

Query: 10  VKKRRYSHKTAR----RTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDR 69
           V ++R  H        RT+   +  D ++++LT+ +    LP+D DLPG+GQ+YC+ C R
Sbjct: 4   VARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKLPIDPDLPGLGQHYCIECAR 63

Query: 70  YFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMP 110
           YF +      H K K H++R+K +    P+TQ +A+ A  +G P
Sbjct: 64  YFDSSQALLVHKKGKVHKRRLKNLR-EEPYTQEEAEAAVNIGQP 106

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BLAST of Lsi01G013000 vs. Swiss-Prot
Match: ZN593_CAEEL (Zinc finger protein 593 homolog OS=Caenorhabditis elegans GN=Y56A3A.18 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-11
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1 

Query: 6   PHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCLH 65
           P    +K   S+KT +R     K  D ++++L KP+    L    +D DLPG GQ+YC+ 
Sbjct: 2   PSGGQRKHTISNKTRKRPG---KDLDQIHEDL-KPEKAAKLLQQEIDYDLPGNGQFYCIE 61

Query: 66  CDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG 108
           C+R+F +   R  H KTK H+ RVK +    P+TQ +A+ A G G
Sbjct: 62  CERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101

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BLAST of Lsi01G013000 vs. Swiss-Prot
Match: ZN593_DICDI (Zinc finger protein 593 homolog OS=Dictyostelium discoideum GN=DDB_G0275351 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 43/118 (36.44%), Postives = 56/118 (47.46%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER--PLPVDEDLPGMGQY 60
           MG    H     ++  +K AR TK   K  D ++DE+    +++     VD DLPGMGQ 
Sbjct: 1   MGRYSGHGGTHTKKKQYKRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQN 60

Query: 61  YCLHCDRYFANVSVRDEHFKTKRHRKRVK-LMTGPAPHTQLDADLAAGMGMPDNGPKL 116
           YC+HC ++F        H K K H+ RVK L T P         LA      DNG KL
Sbjct: 61  YCIHCSKHFVTNEDLQSHIKGKPHKIRVKELKTKP-------YSLAESQIPVDNGVKL 111

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BLAST of Lsi01G013000 vs. TrEMBL
Match: A0A0A0KHA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446540 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.2e-59
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLDA+LAAGMGMPDNGPKLMA+
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

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BLAST of Lsi01G013000 vs. TrEMBL
Match: A0A0B2S311_GLYSO (Zinc finger protein 593 OS=Glycine soja GN=glysoja_017352 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.8e-55
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYY 60
           MGGKCPHR+VKKRRYSHKTARRTKF +KGDDMVY +L KPD ERP LPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDQERPPLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYFAN++VRDEHFKTKRH+KR+K M GPAPHTQLDADLA+GMGMPDNGPKLM++
Sbjct: 61  CLHCDRYFANITVRDEHFKTKRHKKRIKQMMGPAPHTQLDADLASGMGMPDNGPKLMSM 119

[Close]
BLAST of Lsi01G013000 vs. TrEMBL
Match: C6T4X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G055200 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.8e-55
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYY 60
           MGGKCPHR+VKKRRYSHKTARRTKF +KGDDMVY +L KPD ERP LPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDQERPPLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYFAN++VRDEHFKTKRH+KR+K M GPAPHTQLDADLA+GMGMPDNGPKLM++
Sbjct: 61  CLHCDRYFANITVRDEHFKTKRHKKRIKQMMGPAPHTQLDADLASGMGMPDNGPKLMSM 119

[Close]
BLAST of Lsi01G013000 vs. TrEMBL
Match: A0A0B2STV1_GLYSO (Zinc finger protein 593 OS=Glycine soja GN=glysoja_007944 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 101/119 (84.87%), Postives = 112/119 (94.12%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER-PLPVDEDLPGMGQYY 60
           MGGKCPHR+VKKRRYSHKTARRTKF +KGDDMVY +L KPD ER PLP+DEDLPGMGQYY
Sbjct: 1   MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDEERAPLPLDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYF+NV+VRDEHFKTKRH+KR+K M GPAPHTQLDAD+AAGMGMPDNGPKLM++
Sbjct: 61  CLHCDRYFSNVAVRDEHFKTKRHKKRIKQMMGPAPHTQLDADVAAGMGMPDNGPKLMSM 119

[Close]
BLAST of Lsi01G013000 vs. TrEMBL
Match: C6SVQ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G142300 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 101/119 (84.87%), Postives = 112/119 (94.12%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER-PLPVDEDLPGMGQYY 60
           MGGKCPHR+VKKRRYSHKTARRTKF +KGDDMVY +L KPD ER PLP+DEDLPGMGQYY
Sbjct: 1   MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDEERAPLPLDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYF+NV+VRDEHFKTKRH+KR+K M GPAPHTQLDAD+AAGMGMPDNGPKLM++
Sbjct: 61  CLHCDRYFSNVAVRDEHFKTKRHKKRIKQMMGPAPHTQLDADVAAGMGMPDNGPKLMSM 119

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BLAST of Lsi01G013000 vs. TAIR10
Match: AT2G36930.1 (AT2G36930.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 193.4 bits (490), Expect = 9.3e-50
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = 1 

Query: 3   GKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVE-RPLPVDEDLPGMGQYYCL 62
           G+CP R VKKRR SHKTARR KF VKGDD+VY EL KP+ E +PL +DEDLPGMGQ+YCL
Sbjct: 2   GRCPTRKVKKRRLSHKTARRDKFEVKGDDLVYTELRKPETEIKPLQLDEDLPGMGQFYCL 61

Query: 63  HCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMA 118
           HCDRYF+NVSVRD+HFKTK+H+KRV +M G APH+QLDADLA GMGMPDNGPKLM+
Sbjct: 62  HCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLMS 117

[Close]
BLAST of Lsi01G013000 vs. NCBI nr
Match: gi|659125060|ref|XP_008462489.1| (PREDICTED: zinc finger protein 593 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDA+LAAGMGMPDNGPKLMA+
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMSGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]
BLAST of Lsi01G013000 vs. NCBI nr
Match: gi|449451052|ref|XP_004143276.1| (PREDICTED: zinc finger protein 593 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.0e-58
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLDA+LAAGMGMPDNGPKLMA+
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

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BLAST of Lsi01G013000 vs. NCBI nr
Match: gi|1012028972|ref|XP_015951571.1| (PREDICTED: zinc finger protein 593 [Arachis duranensis])

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYC 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+KGDDMVYD+L K D ERPLPVDEDLPGMGQYYC
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLIKGDDMVYDQLNKADEERPLPVDEDLPGMGQYYC 60

Query: 61  LHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           LHCDRYF+NV+VRDEHFKTK+H+KRVK M GPAPHTQLDA+LAAGMGMPDNGPKLM++
Sbjct: 61  LHCDRYFSNVAVRDEHFKTKKHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM 118

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BLAST of Lsi01G013000 vs. NCBI nr
Match: gi|1021483599|ref|XP_016184850.1| (PREDICTED: zinc finger protein 593 [Arachis ipaensis])

HSP 1 Score: 229.6 bits (584), Expect = 3.3e-57
Identity = 103/118 (87.29%), Postives = 113/118 (95.76%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYC 60
           MGGKCPHRS+KKRRYSHKTARRTKFL+KGDDMVYD+L K D ERPLPVDEDLPGMGQYYC
Sbjct: 1   MGGKCPHRSIKKRRYSHKTARRTKFLIKGDDMVYDQLNKADEERPLPVDEDLPGMGQYYC 60

Query: 61  LHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAI 119
           LHCDRYF+NV+VRDEHFKTK+H+KRVK M GPAPHTQLDA+LAAGMGMPDNGPKLM++
Sbjct: 61  LHCDRYFSNVAVRDEHFKTKKHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM 118

[Close]
BLAST of Lsi01G013000 vs. NCBI nr
Match: gi|697186874|ref|XP_009602474.1| (PREDICTED: zinc finger protein 593 [Nicotiana tomentosiformis])

HSP 1 Score: 222.6 bits (566), Expect = 4.1e-55
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER-PLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHK  RRTKFLVKGDD V+DEL +P+ ER PLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKQFRRTKFLVKGDDAVFDELKRPEGERKPLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAIS 120
           C HCDRYFANV+VRDEHFKTK+HRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLM++S
Sbjct: 61  CFHCDRYFANVTVRDEHFKTKKHRKRVKLMMGPAPHTQLDAELAAGMGMPDNGPKLMSMS 120

The following BLAST results are available for this feature:
BLAST of Lsi01G013000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZN593_XENTR1.7e-1343.40Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1[more]
BUD20_YEAST1.5e-1237.60Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... [more]
BUD20_SCHPO3.6e-1134.62Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... [more]
ZN593_CAEEL8.0e-1138.10Zinc finger protein 593 homolog OS=Caenorhabditis elegans GN=Y56A3A.18 PE=3 SV=1[more]
ZN593_DICDI1.4e-1036.44Zinc finger protein 593 homolog OS=Dictyostelium discoideum GN=DDB_G0275351 PE=3... [more]
BLAST of Lsi01G013000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA1_CUCSA7.2e-5993.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446540 PE=4 SV=1[more]
A0A0B2S311_GLYSO2.8e-5585.71Zinc finger protein 593 OS=Glycine soja GN=glysoja_017352 PE=4 SV=1[more]
C6T4X9_SOYBN2.8e-5585.71Uncharacterized protein OS=Glycine max GN=GLYMA_10G055200 PE=2 SV=1[more]
A0A0B2STV1_GLYSO1.1e-5484.87Zinc finger protein 593 OS=Glycine soja GN=glysoja_007944 PE=4 SV=1[more]
C6SVQ9_SOYBN1.1e-5484.87Uncharacterized protein OS=Glycine max GN=GLYMA_13G142300 PE=2 SV=1[more]
BLAST of Lsi01G013000 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36930.19.3e-5076.72 zinc finger (C2H2 type) family protein[more]
BLAST of Lsi01G013000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125060|ref|XP_008462489.1|1.2e-5994.12PREDICTED: zinc finger protein 593 [Cucumis melo][more]
gi|449451052|ref|XP_004143276.1|1.0e-5893.28PREDICTED: zinc finger protein 593 [Cucumis sativus][more]
gi|1012028972|ref|XP_015951571.1|2.6e-5788.14PREDICTED: zinc finger protein 593 [Arachis duranensis][more]
gi|1021483599|ref|XP_016184850.1|3.3e-5787.29PREDICTED: zinc finger protein 593 [Arachis ipaensis][more]
gi|697186874|ref|XP_009602474.1|4.1e-5586.67PREDICTED: zinc finger protein 593 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR022755Znf_C2H2_jaz
IPR007087Zinc finger, C2H2
IPR003604Matrin/U1-like-C_Znf_C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051604 protein maturation
biological_process GO:0009245 lipid A biosynthetic process
biological_process GO:0000055 ribosomal large subunit export from nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0030687 preribosome, large subunit precursor
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000036 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process
molecular_function GO:0000035 acyl binding
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0043023 ribosomal large subunit binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G013000.1Lsi01G013000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 55..89
score: 5.4
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 60..82
scor
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 57..83
score: 2.
NoneNo IPR availablePANTHERPTHR20863ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATEDcoord: 1..114
score: 4.5
NoneNo IPR availablePANTHERPTHR20863:SF2ZINC FINGER PROTEIN 593coord: 1..114
score: 4.5
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 45..109
score: 7.09

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G013000Csa6G446540Cucumber (Chinese Long) v2culsiB435
Lsi01G013000CSPI06G24760Wild cucumber (PI 183967)cpilsiB440
Lsi01G013000Cucsa.124740Cucumber (Gy14) v1cgylsiB190
Lsi01G013000Cla018326Watermelon (97103) v1lsiwmB152
Lsi01G013000MELO3C024474Melon (DHL92) v3.5.1lsimeB150
Lsi01G013000ClCG04G009390Watermelon (Charleston Gray)lsiwcgB142
Lsi01G013000MELO3C024474.2Melon (DHL92) v3.6.1lsimedB157
Lsi01G013000Cla97C04G076130Watermelon (97103) v2lsiwmbB140
Lsi01G013000Bhi03G001195Wax gourdlsiwgoB170
Lsi01G013000CsGy6G024150Cucumber (Gy14) v2cgyblsiB398
Lsi01G013000CsaV3_6G039970Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G013000Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G013000Cucurbita pepo (Zucchini)cpelsiB324
Lsi01G013000Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G013000Cucurbita pepo (Zucchini)cpelsiB491
Lsi01G013000Wild cucumber (PI 183967)cpilsiB167
Lsi01G013000Wild cucumber (PI 183967)cpilsiB441
Lsi01G013000Cucumber (Chinese Long) v2culsiB168
Lsi01G013000Cucumber (Chinese Long) v2culsiB436
Lsi01G013000Melon (DHL92) v3.5.1lsimeB139
Lsi01G013000Watermelon (Charleston Gray)lsiwcgB118
Lsi01G013000Watermelon (Charleston Gray)lsiwcgB130
Lsi01G013000Watermelon (97103) v1lsiwmB127
Lsi01G013000Watermelon (97103) v1lsiwmB161
Lsi01G013000Cucumber (Gy14) v2cgyblsiB153
Lsi01G013000Cucumber (Gy14) v2cgyblsiB399
Lsi01G013000Melon (DHL92) v3.6.1lsimedB133
Lsi01G013000Melon (DHL92) v3.6.1lsimedB146
Lsi01G013000Silver-seed gourdcarlsiB138
Lsi01G013000Silver-seed gourdcarlsiB214
Lsi01G013000Silver-seed gourdcarlsiB223
Lsi01G013000Silver-seed gourdcarlsiB598
Lsi01G013000Silver-seed gourdcarlsiB622
Lsi01G013000Cucumber (Chinese Long) v3cuclsiB185
Lsi01G013000Cucumber (Chinese Long) v3cuclsiB463
Lsi01G013000Watermelon (97103) v2lsiwmbB116
Lsi01G013000Watermelon (97103) v2lsiwmbB124
Lsi01G013000Wax gourdlsiwgoB147
Lsi01G013000Wax gourdlsiwgoB161
Lsi01G013000Bottle gourd (USVL1VR-Ls)lsilsiB025
Lsi01G013000Bottle gourd (USVL1VR-Ls)lsilsiB070
Lsi01G013000Bottle gourd (USVL1VR-Ls)lsilsiB086
Lsi01G013000Cucumber (Gy14) v1cgylsiB494
Lsi01G013000Cucumber (Gy14) v1cgylsiB626
Lsi01G013000Cucurbita maxima (Rimu)cmalsiB230
Lsi01G013000Cucurbita maxima (Rimu)cmalsiB518
Lsi01G013000Cucurbita maxima (Rimu)cmalsiB597
Lsi01G013000Cucurbita maxima (Rimu)cmalsiB747
Lsi01G013000Cucurbita maxima (Rimu)cmalsiB786
Lsi01G013000Cucurbita moschata (Rifu)cmolsiB218
Lsi01G013000Cucurbita moschata (Rifu)cmolsiB503
Lsi01G013000Cucurbita moschata (Rifu)cmolsiB582
Lsi01G013000Cucurbita moschata (Rifu)cmolsiB774