Lsi01G011210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G011210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transducin/WD40 repeat-like superfamily protein
Location	chr01 : 9293214 .. 9295990 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAGAAGATGGGAAAGAGGGGCCCACTCAACAATTTCATCGTCTTTAAGATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGGTGGGAAATTCTGCATCACTGACCCAAACATCATGAAAAAAAGAAGTGTGAATATGATTGCCCAAACATCTGCTAATGTAGGTTGTAACTATACCATAGCATTGAAATGGATCTCCATGGAGCTTTTGCAGATTCTAAATTGGAAGATATTGCCAATGTTGGATAGCTGCTATTGAGTACTTTGCGTTAAGGATATTCCATCTAAGAGCACCATCTTCACAGAGGAATCTCCATATCCATTTAGATAAAAGAGCGTCATTTCGATACTTGAGATTGCCAATAAAATAACTAACCCACCCAATTGAAGAGGAAGTTGAATTTTTGCCTAATTCACATTGTGCGGCATCTTCCCAAAGAAAATTCCTAATGATCTTTTCAATTGTTTTTGCAATCTTGGTAGACATTTTGAATAAGGATAAATAATACATAGACATATTAGAAAGGGTAGATTGGATGATTGTTTGCCTACCCTCCTTTGGATATGAAAGAAAACTTCCAATTACGAAATCTATGTTGGATTTTCTCCACAATTGATGTCCTGAGTCCTGAATAAGATTGGCTCAGTTTTTAGTTAAAAATGAAGGGCAGTCAATGGGTCGGTATTTCTCTCGGAAGTTTGAACCATGGGATGAAAAGCTGCAGGGAAAGTGAAAGTCCCCCCCGCATGGAGGGTGGTTTTAAATGTCGCGGTTTCCTTTGAGTCAATAGAGTAATATTGAGTCAAACCATTGTGTTCTTCATGACATTTTCATTAATTCTTTGTATTCTTCATTTTCAATGTTATGTTAAAAATAATTACAAATAAATTAATGTCATACACATCCCTGATCCCACACTAACTAAAGTATAGTTGCACTAAAACTAAATTAGCTTTGATTGTAGAAAGATTTTCATTAAGTTCAATTGTTTTGCTAAAATGATTCCCAAAAAAAAATGTTTTACTAGTTTATTTTCTTTATAATTAAATATGTAATTTATAACGGAAAACTAAGTTAATATGGAATTAATTGGCATAGAAAATAAACTAAACTTGGAGTGGACTGTAGTACATTCAGGGTATTATCTTTGTTCCCAAGAAATATATATATTTATGAGATTGTATGTATTCATAATAATGAGATTGTATGTATTCATAATACATTGTAGTGCGGAAAGTTCTTTTATTTTAAAATAATATATATCTATAAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGATGGTTCTAATATATAAATGTTTACAGATACTTCTTTCCTTTTCACAGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGAGAGCCAAGAGGAGGAAGAACATGAATTTCCTCAGCTTAATAATGCACATTATGCTCTGAGGTATTTAATTCTTCACTTCTTGATACAGTTTATTGCAGTTATTCCAATCTTGAATTATTAGAGTTTGAAACTTGTGGCTTTTAAGAATCATGATAATGCTGGTGGTGTTTAATTTATCAGTCAATATCAAATTGACATAGACTGGTTGATCCTGGTCCAACAATAAGAATCCTTGCCAGTACAATAATTCATAATTTTGGGTCTTTAACTTAATGAAGTTACTTGATAAAGTTGAACAACTTGATTGAAAAAGTTGTTTTTTTAATTGCTTTGGGTCTCAAACTTGAATTTTGTTTACCGTACAAGTCTTAGCTGTACAAGATCAGCTAGGCTTTGATATCAAGATATTTTAAATGTGTTTAAAGGCTAGATTTATAACAACTTCAACCCCCTAATTTATTGTTCCACCCTTTACCGACACAGTCCCGTCGTGTGCACTGCATTGTATAGAGTTTTCCCCTGGTGAATCACAAATCATTTCAAACCATTTGGTGTTGAAAGTTCAACCTCAAAGCTGATAATTTCAAGTGAATTAGTTGAATCTCTGTTTTCCATTCTCTAAAATTTCATGTGTAGATTTCTTGATTTAAAACAAAGGAAAGTTATAGCTTTGGCATTTACATTGATCTCTTATATGCTTTGTTTCAGGTTCTGCAGAATGCCAAACATAATATCTGAATGGTTTTTGACTGATCTAAAGCCTCTCTAACTTTGTCCTTGAGTTTCAACTAAGATCATAAAGTTGTTTGTTGACTATTCCAATTCCAAACTCGATTATGAAACCGTAATTTGTAAATTAAACGACGTTGTATGACGTTAATTCGATGTTCATTCATTGACCCTTAGAATTGAAGTTTTTATTCATTTTTATCAGTCTCTGAATCAACAATCAGATCATCTGGTAAAGAATTGAGAAAGAGGCAATAAGCTATGGTAAGACAATTTGTTTCTCCTCAAAATCAAAGAGAGTGCAGAAACATATTGATTACAAAGGCAAAACAAGGTTGATACCTTAAATTTGGTGTACCAAATTTACAAGAATGAAGTGGCAATTGGCTTACACTGACAAAAGTAAATGAAGATTGTCTAGAACACAAGTCAGTAGTTGGACCTGCCTTCCAAATTCAATAAATTTCCATCATAATTTCACTTTGAAATTTCCTTCTTCA

mRNA sequence

ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGAGAGCCAAGAGGAGGAAGAACATGAATTTCCTCAGCTTAATAATGCACATTATGCTCTGAGGTTCTGCAGAATGCCAAACATAATATCTGAATGGTTTTTGACTGATCTAAAGCCTCTCTAACTTTGTCCTTGAGTTTCAACTAAGATCATAAAGTTGTTTGTTGACTATTCCAATTCCAAACTCGATTATGAAACCGTAATTTGTAAATTAAACGACGTTGTATGACGTTAATTCGATGTTCATTCATTGACCCTTAGAATTGAAGTTTTTATTCATTTTTATCAGTCTCTGAATCAACAATCAGATCATCTGGTAAAGAATTGAGAAAGAGGCAATAAGCTATGGTAAGACAATTTGTTTCTCCTCAAAATCAAAGAGAGTGCAGAAACATATTGATTACAAAGGCAAAACAAGGTTGATACCTTAAATTTGGTGTACCAAATTTACAAGAATGAAGTGGCAATTGGCTTACACTGACAAAAGTAAATGAAGATTGTCTAGAACACAAGTCAGTAGTTGGACCTGCCTTCCAAATTCAATAAATTTCCATCATAATTTCACTTTGAAATTTCCTTCTTCA

Coding sequence (CDS)

ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGA

Protein sequence

MDIPFKPRLPNFVFSIPNISHSSIRSIGESIQLLGYKHRCLNTHVQQYKYDKMDIKAMVTSVSYHPKDKCMITASVDGMIRVWKT

Homology

[Close]

BLAST of Lsi01G011210 vs. TrEMBL
Match: A0A0A0KFA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486680 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. TAIR10
Match: AT5G64730.1 (AT5G64730.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.7e-07
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1


Query: 58  MVTSVSYHPKDKCMITASVDGMIRVWK 85
           +VTSVSYHPK+ CM+T+SVDG IRVWK
Sbjct: 272 VVTSVSYHPKEDCMLTSSVDGTIRVWK 298

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: gi|659080817|ref|XP_008440996.1| (PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: gi|449448452|ref|XP_004141980.1| (PREDICTED: WD repeat domain-containing protein 83 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

The following BLAST results are available for this feature:

BLAST of Lsi01G011210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G011210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFA7_CUCSA	2.6e-06	89.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486680 PE=4 SV=1	[more]

BLAST of Lsi01G011210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64730.1	4.7e-07	77.78	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Lsi01G011210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080817\|ref\|XP_008440996.1\|	3.8e-06	89.66	PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo]	[more]
gi\|449448452\|ref\|XP_004141980.1\|	3.8e-06	89.66	PREDICTED: WD repeat domain-containing protein 83 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR011047	Quinoprotein_ADH-like_supfam
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011210.1	Lsi01G011210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 43..84 score: 0.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 59..85 score: 11
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 51..83 score: 6.7
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 48..84 score: 5.
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 52..85 score: 10

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G011210	Carg10559	Silver-seed gourd	carlsiB214
Lsi01G011210	CsaV3_6G042010	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G011210	Melon (DHL92) v3.6.1	lsimedB157
Lsi01G011210	Silver-seed gourd	carlsiB742
Lsi01G011210	Watermelon (97103) v2	lsiwmbB115
Lsi01G011210	Watermelon (97103) v2	lsiwmbB126
Lsi01G011210	Wax gourd	lsiwgoB162
Lsi01G011210	Wax gourd	lsiwgoB183
Lsi01G011210	Bottle gourd (USVL1VR-Ls)	lsilsiB029
Lsi01G011210	Cucumber (Gy14) v1	cgylsiB125
Lsi01G011210	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G011210	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G011210	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G011210	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G011210	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G011210	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G011210	Wild cucumber (PI 183967)	cpilsiB105
Lsi01G011210	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G011210	Cucumber (Chinese Long) v2	culsiB108
Lsi01G011210	Cucumber (Chinese Long) v2	culsiB434
Lsi01G011210	Melon (DHL92) v3.5.1	lsimeB150
Lsi01G011210	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G011210	Watermelon (97103) v1	lsiwmB142
Lsi01G011210	Watermelon (97103) v1	lsiwmB160
Lsi01G011210	Cucumber (Gy14) v2	cgyblsiB096
Lsi01G011210	Cucumber (Gy14) v2	cgyblsiB398