Lsi01G010920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G010920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNADH-quinone oxidoreductase subunit D
Locationchr01 : 9002883 .. 9005501 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTGGTCCTACGGACCGTGAACGGATTCGCCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGGAGCACGGTCCGCCAAAATCGGCATAGGTTAGGTGCTATTGATGGAACATGGTAAGCCTATCTTTCTCCATATGGAAGTGCTGCGGGCACATAGAGATGTGGGTAGAGGAAGCCTCAAAAAGCGAAGGCCGAGCTGTAGGTCACGTGACCTGCACCGAGTTGGTGGCTGACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGTCGGTCGAATCGGGCGGGCCCCCGCCCCGGAACGTCGAATGAAATAGGTGGCCGGGTTCTCTTTCGACAACCCTTTTGATATGATAGGCCCGGCCACCTTCCCCCTATCCCTTATGTTTAGGAGCGGGATCCGCCCAAGAACGACCAGTCCCGTGGTGGTACGTAAGGCACGGACTCCGCGAACGTCCCGCGCCCCCTTTACTAATAAAGGAAAGAAAGCCTCAACCAGAACCACATTCCTTTTGCGTGCGGATGTAGCTAAGTGTCTGACTCTATTGGTCATAGTTCCCTGCTGTTGCGGCCGGTGCTCGTTTGCGCGCGCGTGAACCAACCCAACAAACAAGGAAAGGATGCCTCTCGGGGCATCTGAGAATGATTCGAGCTGTATGAAGGGAAACTCTCACGTACAGTTTGTTTTTTTTTGGGGGGGGAAGGAGCCCGACAGGGTCCCCCCACTGACTTGGCCCGGGCCTAAGTGAAAGTGAAGTGGTGGGCCTACCCATCCCAACCAGGGGTATGCTGGGATTTGCGAAGAGCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACGTACCAGTAGGTACCAGAGGAGATCGCTATGATCGTTACTGTATCCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATTGTGCAATGTCCTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCGAATGAAACTATCCATGGAATCGTGTGCCGTGTGAAACGTAGATCATCGCCGTTCTTAACCGAGACTCAGGTTAAGCTCCGTCTCGGAACCTTGTGGGGTTAGGAGTAAAGCATCCCGAGGTTGACGCATCTCGTTGGGCGTGGAGAAACATTGGGAACCAAAATAGCTTTCTTCGGAGCCGTTTCTTGTCCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTTCGGTGATTCGGAAGAATCAACTTACTTCTCCCTTCTTCATTGATCTGGGGGAAAAGGAACCGTCTACCTGTTGGGAAGCTAGACATTAAGTAAGTGGCTTGATGAGGATAACTAAGCTGACACGCCGGAGTTGGCTGCTGGCACAACTGGGTGGTGCCTTACCGCACCGCAGGTGAACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCATCCAAGATCAGAACGAGCTTGCCGGCGGACCATTGCCGTCCCATTCTTGAGTGAGCTGGAGCGCAGCCATCTTATCCACTGAACTAGCTAGAAGCTATTGCTTCGGGTCGAAGCACTAAAAGAAAAGGACCAGGAAACGCGGCGGTATAGGAACCACGGGACCCCCCCACTAGTCTAGTAAAGGGAAAACAGAAGTGCGCTCCTGCGCACCAGCTGAAAAAGCCCTTTACCCTTTGAATAATAAGGTCAGCTTCATAGTTCCAACCTAGATAAGGCTTTTTTATGCCCTTTTTTTAGGTTGGGTTGCTGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCGAGAGAGGGCAGCCTTTAGAAGCAAGAGGTTGGGAAACCAAGAGAACGCTTCGCGTTTTCTTATCTTTTTCCCGCTCTAGGAGTAGGAGTAGCACAAAAAGAGGGATTTGGATTATTGACCCAATGAGAAACCACTAACATCTTCCTCGTTGGGGCTTCGCGCACTGGGAAAACGCTAACGCGACGGGAAATCGGCCACTAGTAACAAAGCGAACATAAGGTATCGAGAGGGCTATCACAGTAAGGTGCGAATTACCCCCTATTTTGAAAGTACCCCTCTTCCTATTTAGGTAGGGGGTTGAGGCGAGAAATGGCTTGATGAACCGTTCCGTTCGCCACGCACCGGCCCCATTCACTTGCTTATCGTAGAGGCTTTCAGTATACAGTGCCCCACAACTATTCATAGTATAGTGGGGTTGAAACACGAGAGTGCCCGCCCTTTCTTTCAAGTAGGCCACTTTTTCCGGAACGCAGCCCGGGATAAGCGTGACCGTGTATATATATCTATATCTATATATATCTTCGATGCTGTCATTTCGAAATGTCCGCTTCAACCGCTGTTTCAACTACCAAAAAGCTAAGTTGGCTTGACGAGCGCAGATGTGAGGAAGCGGGGGGAGCAATAAAACAACAAATCTCTCGCTTAAGGCTTTCATCGTAAGGGGCAAAGAGAAGCGCTTTTGCTACTGAGAAAGTGAACGGTCAGCGCGAAGGTTCAAGACTTAGCCGAGCATTAGCGAAGCGTCATTCTCATAGTGAGGCGCTTCGAGTTTTCGAAGCGCTGTAG

mRNA sequence

ATGGTGTTGGTCCTACGGACCGTGAACGGATTCGCCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGGAGCACGGTCCGCCAAAATCGGCATAGGTTAGGTGCTATTGATGGAACATGTTGGTGGCTGACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGCCCGGCCACCTTCCCCCTATCCCTTATGTTTAGGAGCGGGATCCGCCCAAGAACGACCAGTCCCGTGGTGGTACTTCCCTGCTGTTGCGGCCGGTGCTCGTTTGCGCGCGCGTGAACCAACCCAACAAACAAGGAAAGGATGCCTCTCGGGGCATCTGAGAATGATTCGAGCTTGGTGGGCCTACCCATCCCAACCAGGGGTATGCTGGGATTTGCGAAGAGCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACGTACCAGTAGGTACCAGAGGAGATCGCTATGATCGTTACTGTATCCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATTGTGCAATGTCCTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCGAATGAAACTATCCATGGAATCGTGTGAACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCATCCAAGATCAGAACGAGCTTGCCGGCGGACCATTGCCGTCCCATTCTTGAGTCAGCTTCATAGTTCCAACCTAGATAAGGCTTTTTTATGCCCTTTTTTTAGGTTGGGTTGCTGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCGAGAGAGGGCAGCCTTTAGAAGCAAGAGAGGCTTTCAGTATACAGTGCCCCACAACTATTCATAGTATAGTGGGGTTGAAACACGAGAGTGCCCGCCCTTTCTTTCAAGTAGGCCACTTTTTCCGGAACGCAGCCCGGGATAAGCGTGACCGTGTATATATATCTATATCTATATATATCTTCGATGCTGTCATTTCGAAATGGGCAAAGAGAAGCGCTTTTGCTACTGAGAAAGTGAACGGTCAGCGCGAAGGTTCAAGACTTAGCCGAGCATTAGCGAAGCGTCATTCTCATAGTGAGGCGCTTCGAGTTTTCGAAGCGCTGTAG

Coding sequence (CDS)

ATGGTGTTGGTCCTACGGACCGTGAACGGATTCGCCTCTGGCCTCTGGGTACGTCGGAACCGCATAAGTTCACCGGGGTGGAGCACGGTCCGCCAAAATCGGCATAGGTTAGGTGCTATTGATGGAACATGTTGGTGGCTGACTGGGCTTTTTCCTAGATCAAAGCGGATCAGCTCGCCTTCTTGTTATCCAAAAGCCCGGCCACCTTCCCCCTATCCCTTATGTTTAGGAGCGGGATCCGCCCAAGAACGACCAGTCCCGTGGTGGTACTTCCCTGCTGTTGCGGCCGGTGCTCGTTTGCGCGCGCGTGAACCAACCCAACAAACAAGGAAAGGATGCCTCTCGGGGCATCTGAGAATGATTCGAGCTTGGTGGGCCTACCCATCCCAACCAGGGGTATGCTGGGATTTGCGAAGAGCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACGTACCAGTAGGTACCAGAGGAGATCGCTATGATCGTTACTGTATCCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATTGTGCAATGTCCTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCGAATGAAACTATCCATGGAATCGTGTGAACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCATCCAAGATCAGAACGAGCTTGCCGGCGGACCATTGCCGTCCCATTCTTGAGTCAGCTTCATAGTTCCAACCTAGATAAGGCTTTTTTATGCCCTTTTTTTAGGTTGGGTTGCTGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCGAGAGAGGGCAGCCTTTAGAAGCAAGAGAGGCTTTCAGTATACAGTGCCCCACAACTATTCATAGTATAGTGGGGTTGAAACACGAGAGTGCCCGCCCTTTCTTTCAAGTAGGCCACTTTTTCCGGAACGCAGCCCGGGATAAGCGTGACCGTGTATATATATCTATATCTATATATATCTTCGATGCTGTCATTTCGAAATGGGCAAAGAGAAGCGCTTTTGCTACTGAGAAAGTGAACGGTCAGCGCGAAGGTTCAAGACTTAGCCGAGCATTAGCGAAGCGTCATTCTCATAGTGAGGCGCTTCGAGTTTTCGAAGCGCTGTAG

Protein sequence

MVLVLRTVNGFASGLWVRRNRISSPGWSTVRQNRHRLGAIDGTCWWLTGLFPRSKRISSPSCYPKARPPSPYPLCLGAGSAQERPVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESCERAVAFVVVLQDSNVLHPRSERACRRTIAVPFLSQLHSSNLDKAFLCPFFRLGCWIRDPRSRLDQHPAERGQPLEAREAFSIQCPTTIHSIVGLKHESARPFFQVGHFFRNAARDKRDRVYISISIYIFDAVISKWAKRSAFATEKVNGQREGSRLSRALAKRHSHSEALRVFEAL
Homology
[Close]
BLAST of Lsi01G010920 vs. Swiss-Prot
Match: NDUS2_NICSY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.6e-41
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMI 191
           GVCWDLR+AAPYDVHDQLDPD+PVGTRGDRYDRYCIRIEEMRQSVRIIVQC NQMPSGMI
Sbjct: 228 GVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQMPSGMI 287

Query: 192 KADDRKLCPPSRSRMKLSMES 213
           KADDRKLCPPSRSRMKLSMES
Sbjct: 288 KADDRKLCPPSRSRMKLSMES 308

[Close]
BLAST of Lsi01G010920 vs. Swiss-Prot
Match: NDUS2_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana GN=NAD7 PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 3.4e-38
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1 

Query: 131 PGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGM 190
           PGVCWDLRRAAPYDV+DQLD DVPVGTRGD YDRYCIRIEEMRQS+RIIVQC NQMPSGM
Sbjct: 227 PGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQMPSGM 286

Query: 191 IKADDRKLCPPSRSRMKLSMES 213
           IKADDRKLCPPSR RMKLSMES
Sbjct: 287 IKADDRKLCPPSRCRMKLSMES 308

[Close]
BLAST of Lsi01G010920 vs. Swiss-Prot
Match: NDUS2_NEPOL (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-26
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMI 191
           GV WDLR+  PYDV++++  DVPVGT+GD YDRY  R+EEMRQS+ II+QC NQ+P GMI
Sbjct: 232 GVAWDLRKTQPYDVYNRMIFDVPVGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQLPKGMI 291

Query: 192 KADDRKLCPPSRSRMKLSMES 213
           KADD+K+ PPSRS+MK SMES
Sbjct: 292 KADDKKITPPSRSQMKQSMES 312

[Close]
BLAST of Lsi01G010920 vs. Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-25
Identity = 51/81 (62.96%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMI 191
           G+ WDLR+  PYDV+D+L+ D+PVGT+GD YDRY IR+EEMRQS+++I+QC N+MP+G+I
Sbjct: 230 GIAWDLRKTQPYDVYDELEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNKMPTGVI 289

Query: 192 KADDRKLCPPSRSRMKLSMES 213
           K DD+K+ PPSR  MK SME+
Sbjct: 290 KVDDKKISPPSRVDMKDSMEA 310

[Close]
BLAST of Lsi01G010920 vs. Swiss-Prot
Match: NDUS2_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 5.7e-25
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMI 191
           G+ WDLR+  PYDV+DQ++ DVPVG+RGD YDRY  R+EEMRQS+RII QC N+MP G I
Sbjct: 297 GIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEI 356

Query: 192 KADDRKLCPPSRSRMKLSMES 213
           K DD K+ PP R+ MK SMES
Sbjct: 357 KVDDAKVSPPKRAEMKTSMES 377

[Close]
BLAST of Lsi01G010920 vs. TrEMBL
Match: K3YY16_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_019166mg PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 142/215 (66.05%), Postives = 151/215 (70.23%), Query Frame = 1 

Query: 107 QQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYC 166
           QQ +    SG +  ++ WWAYPSQPGVCWD RRAAPYDVHDQ D DVPVGTRGDRYDRYC
Sbjct: 199 QQAKDWGFSGVMLRVK-WWAYPSQPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYC 258

Query: 167 IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESC-------ERAVAF 226
           IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMES         RAVAF
Sbjct: 259 IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESVVPYRTAGARAVAF 318

Query: 227 VVVLQDSNVLHPRSERACRRTIAVPFLSQLHSSNLDKAFLCPFF---------------- 286
           VVVLQDSNVL PRSERACRRT A+PF S+L  S+L                         
Sbjct: 319 VVVLQDSNVLRPRSERACRRTTAIPFFSELERSHLIHGKRVKLSLRVEALKEKDRETRRH 378

Query: 287 ---------RLGCWIRDPRSRLDQHPAERGQPLEA 290
                    +    IRDPRSRLDQ+PAERGQPLEA
Sbjct: 379 RNHGNPGGRKTMYGIRDPRSRLDQNPAERGQPLEA 412

[Close]
BLAST of Lsi01G010920 vs. TrEMBL
Match: W9S6E2_9ROSA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Morus notabilis GN=L484_012779 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.7e-53
Identity = 121/196 (61.73%), Postives = 129/196 (65.82%), Query Frame = 1 

Query: 1   MVLVLRTVNGFASGLWVRRNRISSPGWSTVRQNRHRLGAIDGTCWWLTGLFPRSKRISSP 60
           MVLV RTVNGFASGLW  RNR+SSPGWSTV QNRHRLG IDGT  W +G+ PR   +   
Sbjct: 1   MVLVRRTVNGFASGLWACRNRMSSPGWSTVCQNRHRLGTIDGT--W-SGIRPRMTSLV-- 60

Query: 61  SCYPKARPPSPYPLCLGAGSAQERPVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRM 120
                                         FPAVAAGARLRAREPTQQT K  +S     
Sbjct: 61  -----------------------------VFPAVAAGARLRAREPTQQTNKERMS----- 120

Query: 121 IRAWWAYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIV 180
                +      VCWD RRAAPYDVH+QLDP+VPVGTR DRYD YCIRIEEMRQSVRIIV
Sbjct: 121 --LGASENDSSRVCWDSRRAAPYDVHNQLDPNVPVGTRRDRYDHYCIRIEEMRQSVRIIV 155

Query: 181 QCPNQMPSGMIKADDR 197
           QCPNQMPSGMIKADDR
Sbjct: 181 QCPNQMPSGMIKADDR 155

[Close]
BLAST of Lsi01G010920 vs. TrEMBL
Match: A0A0L9U5E2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g135800 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.0e-52
Identity = 146/320 (45.62%), Postives = 163/320 (50.94%), Query Frame = 1 

Query: 67  RPPSPYPLCLGAGSA-QERPVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWW 126
           R P+ +PL L   S  + R      FPAVAA ARLRAR                      
Sbjct: 103 RGPATFPLSLMFRSGIRPRTTSPVVFPAVAASARLRAR---------------------- 162

Query: 127 AYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQ 186
                  VCWD RRAAPYDVHDQ DPDVPVGTRGDRYDRYCIRIEEMRQS+RII QCPN+
Sbjct: 163 -------VCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSMRIIWQCPNK 222

Query: 187 MPSGMIKADDRKLCPPSRSRMKLSMESCERAVAFVVVLQDSNVLHPRSERACRRTIAVPF 246
           +PSGMIKADDRKLCPPSR RMKLSMES  +               P S+      ++ P 
Sbjct: 223 IPSGMIKADDRKLCPPSRCRMKLSMESTGKRGGI------GTTGPPTSKGKTEVRVSAP- 282

Query: 247 LSQLHSSNLDKAFLCPFFRLGCWIRDPRSRLDQHPAERGQPLEAREAFSIQCPTTIHSIV 306
                    +KA      +LGCWIRDPRSRLDQHPAERGQPLEA                
Sbjct: 283 --------AEKALSLDSNKLGCWIRDPRSRLDQHPAERGQPLEA---------------- 342

Query: 307 GLKHESARPFFQVGHFFRNAARDKRDRVYISISIYIFDAVISKW---------------- 365
               E+ R        F +++R +R          IFD VISK                 
Sbjct: 343 -TSWETNRTL----RVFLSSSRPRRG---------IFDVVISKCPLQPQFHLPKSNVGLT 348

[Close]
BLAST of Lsi01G010920 vs. TrEMBL
Match: A0A0D2ZTM8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 101/117 (86.32%), Postives = 103/117 (88.03%), Query Frame = 1 

Query: 85  PVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYD 144
           P P   FPAVAAGARLRAREPTQQ RKGC   HLRMIRAWWAYPSQPGVCWD RRAAPYD
Sbjct: 430 PRPGKKFPAVAAGARLRAREPTQQRRKGCPGRHLRMIRAWWAYPSQPGVCWDSRRAAPYD 489

Query: 145 VHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPP 202
           VHDQ DPDVPVGTRGDRYDRYCIRIEEMRQS+RIIVQC NQMPSGMIKADD+K   P
Sbjct: 490 VHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQCLNQMPSGMIKADDQKHWEP 546

[Close]
BLAST of Lsi01G010920 vs. TrEMBL
Match: A0A078JDN5_BRANA (BnaCnng48520D protein OS=Brassica napus GN=BnaCnng48520D PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 99/117 (84.62%), Postives = 100/117 (85.47%), Query Frame = 1 

Query: 85  PVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYD 144
           P P   FPAVAAGARLRAREPTQQ RKGC   HLRMIRAWWAYPSQPGVCWD RRAA YD
Sbjct: 407 PRPGKKFPAVAAGARLRAREPTQQRRKGCPGRHLRMIRAWWAYPSQPGVCWDSRRAAHYD 466

Query: 145 VHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPP 202
           VHDQ DPDVPVGTRGDRYDRYCIRIEEMRQ  RIIVQC NQMPSGMIKADD+K   P
Sbjct: 467 VHDQSDPDVPVGTRGDRYDRYCIRIEEMRQIHRIIVQCLNQMPSGMIKADDQKHWEP 523

[Close]
BLAST of Lsi01G010920 vs. TAIR10
Match: ATMG00510.1 (ATMG00510.1 NADH dehydrogenase subunit 7)

HSP 1 Score: 161.8 bits (408), Expect = 8.7e-40
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 1 

Query: 131 PGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGM 190
           PGVCWD RRAAPYDVHDQ D DVPVGTRGDRYDRYCIRIEEMRQS+RIIVQC NQMPSGM
Sbjct: 227 PGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQCLNQMPSGM 286

Query: 191 IKADDRKLCPPSRSRMKLSMES 213
           IKADDRKLCPPSR RMKLSMES
Sbjct: 287 IKADDRKLCPPSRCRMKLSMES 308

[Close]
BLAST of Lsi01G010920 vs. TAIR10
Match: ATCG01110.1 (ATCG01110.1 NAD(P)H dehydrogenase subunit H)

HSP 1 Score: 49.7 bits (117), Expect = 4.8e-06
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSG 190
           G+ WDLR+   Y+ +D+ + ++    +GD   RY +R+ EM +S++II Q    +P G
Sbjct: 228 GIPWDLRKIDRYESYDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGG 285

[Close]
BLAST of Lsi01G010920 vs. NCBI nr
Match: gi|944265137|gb|KQL29377.1| (hypothetical protein SETIT_019166mg [Setaria italica])

HSP 1 Score: 264.6 bits (675), Expect = 2.7e-67
Identity = 142/215 (66.05%), Postives = 151/215 (70.23%), Query Frame = 1 

Query: 107 QQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYC 166
           QQ +    SG +  ++ WWAYPSQPGVCWD RRAAPYDVHDQ D DVPVGTRGDRYDRYC
Sbjct: 199 QQAKDWGFSGVMLRVK-WWAYPSQPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYC 258

Query: 167 IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESC-------ERAVAF 226
           IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMES         RAVAF
Sbjct: 259 IRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESVVPYRTAGARAVAF 318

Query: 227 VVVLQDSNVLHPRSERACRRTIAVPFLSQLHSSNLDKAFLCPFF---------------- 286
           VVVLQDSNVL PRSERACRRT A+PF S+L  S+L                         
Sbjct: 319 VVVLQDSNVLRPRSERACRRTTAIPFFSELERSHLIHGKRVKLSLRVEALKEKDRETRRH 378

Query: 287 ---------RLGCWIRDPRSRLDQHPAERGQPLEA 290
                    +    IRDPRSRLDQ+PAERGQPLEA
Sbjct: 379 RNHGNPGGRKTMYGIRDPRSRLDQNPAERGQPLEA 412

[Close]
BLAST of Lsi01G010920 vs. NCBI nr
Match: gi|703139685|ref|XP_010107039.1| (NADH dehydrogenase [ubiquinone])

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 121/196 (61.73%), Postives = 129/196 (65.82%), Query Frame = 1 

Query: 1   MVLVLRTVNGFASGLWVRRNRISSPGWSTVRQNRHRLGAIDGTCWWLTGLFPRSKRISSP 60
           MVLV RTVNGFASGLW  RNR+SSPGWSTV QNRHRLG IDGT  W +G+ PR   +   
Sbjct: 1   MVLVRRTVNGFASGLWACRNRMSSPGWSTVCQNRHRLGTIDGT--W-SGIRPRMTSLV-- 60

Query: 61  SCYPKARPPSPYPLCLGAGSAQERPVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRM 120
                                         FPAVAAGARLRAREPTQQT K  +S     
Sbjct: 61  -----------------------------VFPAVAAGARLRAREPTQQTNKERMS----- 120

Query: 121 IRAWWAYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIV 180
                +      VCWD RRAAPYDVH+QLDP+VPVGTR DRYD YCIRIEEMRQSVRIIV
Sbjct: 121 --LGASENDSSRVCWDSRRAAPYDVHNQLDPNVPVGTRRDRYDHYCIRIEEMRQSVRIIV 155

Query: 181 QCPNQMPSGMIKADDR 197
           QCPNQMPSGMIKADDR
Sbjct: 181 QCPNQMPSGMIKADDR 155

[Close]
BLAST of Lsi01G010920 vs. NCBI nr
Match: gi|920694751|gb|KOM37976.1| (hypothetical protein LR48_Vigan03g135800 [Vigna angularis])

HSP 1 Score: 213.4 bits (542), Expect = 7.1e-52
Identity = 146/320 (45.62%), Postives = 163/320 (50.94%), Query Frame = 1 

Query: 67  RPPSPYPLCLGAGSA-QERPVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWW 126
           R P+ +PL L   S  + R      FPAVAA ARLRAR                      
Sbjct: 103 RGPATFPLSLMFRSGIRPRTTSPVVFPAVAASARLRAR---------------------- 162

Query: 127 AYPSQPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQ 186
                  VCWD RRAAPYDVHDQ DPDVPVGTRGDRYDRYCIRIEEMRQS+RII QCPN+
Sbjct: 163 -------VCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSMRIIWQCPNK 222

Query: 187 MPSGMIKADDRKLCPPSRSRMKLSMESCERAVAFVVVLQDSNVLHPRSERACRRTIAVPF 246
           +PSGMIKADDRKLCPPSR RMKLSMES  +               P S+      ++ P 
Sbjct: 223 IPSGMIKADDRKLCPPSRCRMKLSMESTGKRGGI------GTTGPPTSKGKTEVRVSAP- 282

Query: 247 LSQLHSSNLDKAFLCPFFRLGCWIRDPRSRLDQHPAERGQPLEAREAFSIQCPTTIHSIV 306
                    +KA      +LGCWIRDPRSRLDQHPAERGQPLEA                
Sbjct: 283 --------AEKALSLDSNKLGCWIRDPRSRLDQHPAERGQPLEA---------------- 342

Query: 307 GLKHESARPFFQVGHFFRNAARDKRDRVYISISIYIFDAVISKW---------------- 365
               E+ R        F +++R +R          IFD VISK                 
Sbjct: 343 -TSWETNRTL----RVFLSSSRPRRG---------IFDVVISKCPLQPQFHLPKSNVGLT 348

[Close]
BLAST of Lsi01G010920 vs. NCBI nr
Match: gi|674868837|emb|CDY65733.1| (BnaCnng48520D [Brassica napus])

HSP 1 Score: 204.5 bits (519), Expect = 3.3e-49
Identity = 99/117 (84.62%), Postives = 100/117 (85.47%), Query Frame = 1 

Query: 85  PVPWWYFPAVAAGARLRAREPTQQTRKGCLSGHLRMIRAWWAYPSQPGVCWDLRRAAPYD 144
           P P   FPAVAAGARLRAREPTQQ RKGC   HLRMIRAWWAYPSQPGVCWD RRAA YD
Sbjct: 407 PRPGKKFPAVAAGARLRAREPTQQRRKGCPGRHLRMIRAWWAYPSQPGVCWDSRRAAHYD 466

Query: 145 VHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPP 202
           VHDQ DPDVPVGTRGDRYDRYCIRIEEMRQ  RIIVQC NQMPSGMIKADD+K   P
Sbjct: 467 VHDQSDPDVPVGTRGDRYDRYCIRIEEMRQIHRIIVQCLNQMPSGMIKADDQKHWEP 523

[Close]
BLAST of Lsi01G010920 vs. NCBI nr
Match: gi|1012366330|gb|KYP77511.1| (NADH-ubiquinone oxidoreductase 49 kDa subunit [Cajanus cajan])

HSP 1 Score: 194.1 bits (492), Expect = 4.5e-46
Identity = 101/158 (63.92%), Postives = 107/158 (67.72%), Query Frame = 1 

Query: 132 GVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMI 191
           GVCWD RRAAPYDVHDQ DPDVPVGTRGDRYDRYCIRIEEMRQS+RII QCPN++PSGMI
Sbjct: 146 GVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSLRIIFQCPNKIPSGMI 205

Query: 192 KADDRKLCPPSRSRMKLSMESCERAVAFVVVLQDSNVLHPRSERACRRTIAVPFLSQLHS 251
           KADDR          KL   S                        CR  ++      + S
Sbjct: 206 KADDR----------KLCPPS-----------------------RCRMKLS------MES 264

Query: 252 SNLDKAFLCPFFRLGCWIRDPRSRLDQHPAERGQPLEA 290
           SNLDKAF  PFFRLGCWIRDPRSRLDQHPAERGQPLEA
Sbjct: 266 SNLDKAFFFPFFRLGCWIRDPRSRLDQHPAERGQPLEA 264

The following BLAST results are available for this feature:
BLAST of Lsi01G010920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUS2_NICSY9.6e-4196.30NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN... [more]
NDUS2_ARATH3.4e-3892.68NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana GN... [more]
NDUS2_NEPOL1.8e-2667.90NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea G... [more]
NDUS2_RECAM1.1e-2562.96NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 ... [more]
NDUS2_HUMAN5.7e-2565.43NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sap... [more]
BLAST of Lsi01G010920 vs. TrEMBL
Match NameE-valueIdentityDescription
K3YY16_SETIT1.9e-6766.05Uncharacterized protein OS=Setaria italica GN=SETIT_019166mg PE=4 SV=1[more]
W9S6E2_9ROSA7.7e-5361.73NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Morus notabilis GN=L484... [more]
A0A0L9U5E2_PHAAN5.0e-5245.63Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g135800 PE=4 SV=1[more]
A0A0D2ZTM8_BRAOL1.4e-5186.32Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078JDN5_BRANA2.3e-4984.62BnaCnng48520D protein OS=Brassica napus GN=BnaCnng48520D PE=4 SV=1[more]
BLAST of Lsi01G010920 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00510.18.7e-4092.68ATMG00510.1 NADH dehydrogenase subunit 7[more]
ATCG01110.14.8e-0634.48ATCG01110.1 NAD(P)H dehydrogenase subunit H[more]
BLAST of Lsi01G010920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944265137|gb|KQL29377.1|2.7e-6766.05hypothetical protein SETIT_019166mg [Setaria italica][more]
gi|703139685|ref|XP_010107039.1|1.1e-5261.73NADH dehydrogenase [ubiquinone][more]
gi|920694751|gb|KOM37976.1|7.1e-5245.63hypothetical protein LR48_Vigan03g135800 [Vigna angularis][more]
gi|674868837|emb|CDY65733.1|3.3e-4984.62BnaCnng48520D [Brassica napus][more]
gi|1012366330|gb|KYP77511.1|4.5e-4663.92NADH-ubiquinone oxidoreductase 49 kDa subunit [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding
GO:0048038quinone binding
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: INTERPRO
TermDefinition
IPR001135NADH_Q_OxRdtase_suD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0051287 NAD binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0048038 quinone binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G010920.1Lsi01G010920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001135NADH-quinone oxidoreductase, subunit DPFAMPF00346Complex1_49kDacoord: 132..218
score: 5.2
NoneNo IPR availablePANTHERPTHR11993NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNITcoord: 132..212
score: 1.6
NoneNo IPR availablePANTHERPTHR11993:SF10NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIALcoord: 132..212
score: 1.6