Lsi01G010830 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G010830
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_159
Locationchr01 : 8984264 .. 8985418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTCAACCTCTTTCATGACCCATGGCCTTTCTCCTTTATTAGTGTATAAGGGTGTCACTTGGTTAGCATTTCTATCATCCATGTTGTAGGGTTAGTTTTTCGATAGGGAAACAGGGGAGTTGGCTGTAGTTGAGACACGTTTTTCGTCTCGACGAGATGGATGGATTTATTCGAGATGGTTAACCACTTTTTTAACCGTAAGAGGGAGGTCATTCAGAACCCGCTGGCTCCAGAACCGGTGGAAGTTCCCCACGCCGACCCCAAACGTGAAGCACTTCGAAGTGCCATTCACACTTTGATTCTTTAGCAAGTTCGGGAACATTGTGAGAAGGGGGAAGGGCGGCTGTCCGTTCACTTTCCGGAAATGGCAGAAATCGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGTAGGGACTTCATCAATCATCGCTCAGTGAGCTATTTATTGCCGCCAATAGCGCTTCGCTTGCACGCCAGCGCCACGCCTGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTTTTGTACTGGTAGTACTGGACAAGCTCAGAGGGAATAATATCTTTCTTATTTCTGCCTTTCTTTCCCATGACGACTAGGAACAGGCAAATAAAAAATTTCACTTCGAATTCCGGACCTCAACATTCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCTAGTGTGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

mRNA sequence

ATGGGGTTTTTCGATAGGGAAACAGGGGAGTTGGCTGTAGTTGAGACACGTTTTTCGTCTCGACGAGATGGATGGATTTATTCGAGATGGTTAACCACTTTTTTAACCGTAAGAGGGAGGTCATTCAGAACCCGCTGGCTCCAGAACCGGTGGAAGTTCCCCACGCCGACCCCAAACGTGAAGCACTTCGAACAAGTTCGGGAACATTGTGAGAAGGGGGAAGGGCGGCTGTCCGTTCACTTTCCGGAAATGGCAGAAATCGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGAACAGGCAAATAAAAAATTTCACTTCGAATTCCGGACCTCAACATTCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCTAGTGTGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

Coding sequence (CDS)

ATGGGGTTTTTCGATAGGGAAACAGGGGAGTTGGCTGTAGTTGAGACACGTTTTTCGTCTCGACGAGATGGATGGATTTATTCGAGATGGTTAACCACTTTTTTAACCGTAAGAGGGAGGTCATTCAGAACCCGCTGGCTCCAGAACCGGTGGAAGTTCCCCACGCCGACCCCAAACGTGAAGCACTTCGAACAAGTTCGGGAACATTGTGAGAAGGGGGAAGGGCGGCTGTCCGTTCACTTTCCGGAAATGGCAGAAATCGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGAACAGGCAAATAAAAAATTTCACTTCGAATTCCGGACCTCAACATTCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCTAGTGTGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

Protein sequence

MGFFDRETGELAVVETRFSSRRDGWIYSRWLTTFLTVRGRSFRTRWLQNRWKFPTPTPNVKHFEQVREHCEKGEGRLSVHFPEMAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKENPNLLKSLIRESAAFFHNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIEGTAFLPLSEEQANKKFHFEFRTSTFCCSWCFTISIGNERRSGGTCGTTYWITLVWHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLSYSSEPPYLTTT
Homology
[Close]
BLAST of Lsi01G010830 vs. TrEMBL
Match: A0A078JK64_BRANA (BnaCnng48510D protein OS=Brassica napus GN=BnaCnng48510D PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 184 EQANKKFHFEFRTSTFCCSWCFTISIGNERRSGGTCGTTYWITLVWHEAADAESAPMPLA 243
           E ++K+ HF ++             IGNERRSGGTCGTTYWIT V HEAADAESAPMPLA
Sbjct: 251 EGSSKEMHFWYKC------------IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLA 310

Query: 244 MPCLVPRHGGGSVARHEHRAKGRLSYSSE 273
           MPCLVPRHGGGSVA HEHRAKGR S+S+E
Sbjct: 311 MPCLVPRHGGGSVAGHEHRAKGR-SHSTE 326

[Close]
BLAST of Lsi01G010830 vs. TrEMBL
Match: A0A0D2ZTM7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 184 EQANKKFHFEFRTSTFCCSWCFTISIGNERRSGGTCGTTYWITLVWHEAADAESAPMPLA 243
           E ++K+ HF ++             IGNERRSGGTCGTTYWIT V HEAADAESAPMPLA
Sbjct: 250 EGSSKEMHFWYKC------------IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLA 309

Query: 244 MPCLVPRHGGGSVARHEHRAKGRLSYSSE 273
           MPCLVPRHGGGSVA HEHRAKGR S+S+E
Sbjct: 310 MPCLVPRHGGGSVAGHEHRAKGR-SHSTE 325

[Close]
BLAST of Lsi01G010830 vs. TrEMBL
Match: W9QM76_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 209 IGNERRSGGTCGTTYWITLVWHEAADAESAPMPLAMPCLVPRHGGGSV 257
           IGNERRSGGTC TTYWIT V HEAADAESAPMPLAMPCLVPR+GG  V
Sbjct: 51  IGNERRSGGTCRTTYWITPVQHEAADAESAPMPLAMPCLVPRYGGALV 98

[Close]
BLAST of Lsi01G010830 vs. TrEMBL
Match: B9RSA5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1651930 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 230 HEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLSYSSEPPYLTTT 280
           HEAAD ESAPMPLAMP LVPRHGGGSVARH+HRAKGR S SS+ PYLTTT
Sbjct: 41  HEAADVESAPMPLAMPYLVPRHGGGSVARHQHRAKGRWSNSSKLPYLTTT 90

[Close]
BLAST of Lsi01G010830 vs. TrEMBL
Match: A0A061FIZ5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035820 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 137 HNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIEGTAFLPLSE 184
           H +  N GWH  L HARRCCCWM  FWGAMIL  GTIEG AFL L E
Sbjct: 21  HKQIRNKGWHRSLLHARRCCCWMPWFWGAMILLPGTIEGIAFLQLLE 67

[Close]
BLAST of Lsi01G010830 vs. NCBI nr
Match: gi|674868836|emb|CDY65732.1| (BnaCnng48510D [Brassica napus])

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 184 EQANKKFHFEFRTSTFCCSWCFTISIGNERRSGGTCGTTYWITLVWHEAADAESAPMPLA 243
           E ++K+ HF ++             IGNERRSGGTCGTTYWIT V HEAADAESAPMPLA
Sbjct: 251 EGSSKEMHFWYKC------------IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLA 310

Query: 244 MPCLVPRHGGGSVARHEHRAKGRLSYSSE 273
           MPCLVPRHGGGSVA HEHRAKGR S+S+E
Sbjct: 311 MPCLVPRHGGGSVAGHEHRAKGR-SHSTE 326

[Close]
BLAST of Lsi01G010830 vs. NCBI nr
Match: gi|703078659|ref|XP_010090950.1| (hypothetical protein L484_007585 [Morus notabilis])

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 209 IGNERRSGGTCGTTYWITLVWHEAADAESAPMPLAMPCLVPRHGGGSV 257
           IGNERRSGGTC TTYWIT V HEAADAESAPMPLAMPCLVPR+GG  V
Sbjct: 51  IGNERRSGGTCRTTYWITPVQHEAADAESAPMPLAMPCLVPRYGGALV 98

[Close]
BLAST of Lsi01G010830 vs. NCBI nr
Match: gi|223544226|gb|EEF45748.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 230 HEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLSYSSEPPYLTTT 280
           HEAAD ESAPMPLAMP LVPRHGGGSVARH+HRAKGR S SS+ PYLTTT
Sbjct: 41  HEAADVESAPMPLAMPYLVPRHGGGSVARHQHRAKGRWSNSSKLPYLTTT 90

[Close]
BLAST of Lsi01G010830 vs. NCBI nr
Match: gi|590601758|ref|XP_007019658.1| (Uncharacterized protein TCM_035820 [Theobroma cacao])

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 137 HNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIEGTAFLPLSE 184
           H +  N GWH  L HARRCCCWM  FWGAMIL  GTIEG AFL L E
Sbjct: 21  HKQIRNKGWHRSLLHARRCCCWMPWFWGAMILLPGTIEGIAFLQLLE 67

[Close]
BLAST of Lsi01G010830 vs. NCBI nr
Match: gi|661878854|emb|CDP17417.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-08
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 64  EQVREHCEKGEG-RLSVHFPEMAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKENP 123
           +Q++E   K  G RLSV FPEM E DS  AE IMSR+LE+S E D   LR W +  ++NP
Sbjct: 154 QQLQEASRKAHGVRLSVLFPEMQEADSGTAEWIMSRELELSGETDAATLREWRDSIRDNP 213

Query: 124 NLLKSLIRE 132
            +LK +IRE
Sbjct: 214 KVLKDIIRE 222

The following BLAST results are available for this feature:
BLAST of Lsi01G010830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G010830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078JK64_BRANA1.1e-2469.66BnaCnng48510D protein OS=Brassica napus GN=BnaCnng48510D PE=4 SV=1[more]
A0A0D2ZTM7_BRAOL1.1e-2469.66Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
W9QM76_9ROSA2.7e-1587.50Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1[more]
B9RSA5_RICCO4.5e-1586.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1651930 PE=4 SV=1[more]
A0A061FIZ5_THECC1.5e-1068.09Uncharacterized protein OS=Theobroma cacao GN=TCM_035820 PE=4 SV=1[more]
BLAST of Lsi01G010830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G010830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|674868836|emb|CDY65732.1|1.5e-2469.66BnaCnng48510D [Brassica napus][more]
gi|703078659|ref|XP_010090950.1|3.8e-1587.50hypothetical protein L484_007585 [Morus notabilis][more]
gi|223544226|gb|EEF45748.1|6.5e-1586.00conserved hypothetical protein [Ricinus communis][more]
gi|590601758|ref|XP_007019658.1|2.2e-1068.09Uncharacterized protein TCM_035820 [Theobroma cacao][more]
gi|661878854|emb|CDP17417.1|4.5e-0852.17unnamed protein product [Coffea canephora][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G010830.1Lsi01G010830.1mRNA