Lsi01G009290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G009290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Tetratricopeptide repeat protein 13
Location	chr01 : 7508940 .. 7512328 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTTTCAGACCTTTGACAATTCCTCTTCTCTTTTTATGTAACCATGAAAACATAGCTTGGGATTTTCATGGAATATGCCACCCTAGACATATGGATATAACTTTACTTGCATTTACTACACTTGTTGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGAAGAAAAGAAAATGTTTCTCCCTATATGTAAGTTTGGGTTTCGGCCCTTGGTATACCTTCTGAATTTTCATGATCAATAATTACGCAACCCTTTCGATGGAAACATCATCCAAATTCTACCTCTCATGTCAGGTTTTTAACCCGTCAATCCCCTCATATTGGCAAATTGATTATAAAAGAATGATATAGCTAGATAAGATAATATTATTTATTAACTATCAAAGATCCCACATTAGAAAAATCAAGGGACCTCACCGTCTTTACTAGATAGATGGGTTCTTCCTCTTATTACCAATTGGTTTTGAGATAGAATCGCATGTTATCTAATATGGTATCAGAGGATATAAAGCCCAAACGGATATTCGGTCCAATTAAAAAAACAGAATTGGGATTTGATTCAAGAATAGTGAAACCAAAAGAGACACCATCTTGAGGGGGGGGAGAGACAAGGGACCTCATACTTTTTTGTAAGATAGATGAGTTACTCCTCTCATTGCCAATTACTTTTGAGATGGAACTCCATGTTATTTAATATTAACAATAGATACAAGCCAAGGAATGACTCGGGAGCTTCCTTACCTCTCCCAAAATACCAGGCTATGCTGACCAACTAGATATCCTCTCTCATCTATCAAGCTAATACAATTTTCCTCTTCATGATGTTCCCCATTTGCCTATGTCATAACATTAGTCACTAGTAGGGTCCACATGCTAACTAACAATATAAGGCCCTGCTTCTCTCTGACCTGCTTCTGCCGTAATTTATCGGTGTATCAGAAGAGAGAATATGCTTTTGCTTTTTTTGAGTAGATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATGTATATGAACATTATTGGTGAATAACATGGTGGTTCCACCTTCCTAGTCTTGCATCACATTTAACCACATGATTCTTGAGTAAAACATTGTGATTTGTGAGGGAATACTTTACATATCAGAGCATTGGAATGGATTCAATTATCTAATCTGGGCCCCCCAATTTCTTAACTCTGATTTCGATCTAGCTTGACTAATGTAAACACTGCATGATGAAAGCCAATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATTTGTTTATTTTCAATAATGCATTGAAGTGTACTATTCTTACGACTTGATTTTTCAGAGCATATGCAATGCTTATTGCGGAGAAAACTATGGATCTATGGATTTTAGTACACTAGAAACTGTGAGGGATGCAATTCTAAGGATGATCTATTACTGGTATAATATTTCTGCACTGGTACTAGTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

mRNA sequence

ATGTATATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

Coding sequence (CDS)

ATGTATATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

Protein sequence

MYIIRIFMFYAMTSMAHFDCQFSRVLKTQLHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

Homology

[Close]

BLAST of Lsi01G009290 vs. Swiss-Prot
Match: SRFR1_ARATH (Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-35
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVK
Sbjct: 955  YYWYNFMPLARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVK 1014

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Sbjct: 1015 SWLYPSLKINTSWRDHTEISSAFSTTGAVVAALSTYND 1052

[Close]

BLAST of Lsi01G009290 vs. Swiss-Prot
Match: TTC13_HUMAN (Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 30  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
           +++ YN MPLSRGS+ + + V++G L+A+  E  G IP+G  VD+EAM      +F    
Sbjct: 756 VYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKVA 815

Query: 90  KSWLYPSLK-MTTSWKEYPDVASTLKTTGSVVAALSS 126
           KSW+  +LK ++ S+K  P V+ T  T  S++  L++
Sbjct: 816 KSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLNT 850

[Close]

BLAST of Lsi01G009290 vs. TrEMBL
Match: A0A0A0KIG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493870 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 937  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 996

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 997  KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1035

[Close]

BLAST of Lsi01G009290 vs. TrEMBL
Match: U5G4J2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10170g PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1


Query: 31  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
           ++ YNFMPLSRGSA VGF VLLGLLLAANMEF G IP+G+QVDWEA+LNFDPNSF +SVK
Sbjct: 476 YYWYNFMPLSRGSAVVGFTVLLGLLLAANMEFTGKIPKGIQVDWEAILNFDPNSFAESVK 535

Query: 91  SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            WLYPSLK+TTSWK+YPDV STL TTGSVVAALSSYDD
Sbjct: 536 RWLYPSLKITTSWKDYPDVTSTLATTGSVVAALSSYDD 573

[Close]

BLAST of Lsi01G009290 vs. TrEMBL
Match: A0A061DNS7_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_000742 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRG+A VGF+VLLGL LAANMEF GNIP+G+QVDWEA+LNFDPNSFVDSVK
Sbjct: 1003 YYWYNFMPLSRGTAVVGFIVLLGLFLAANMEFTGNIPKGVQVDWEAILNFDPNSFVDSVK 1062

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            S LYPS+KMTTSWK++PDVASTL TTGSVVAALS YDD
Sbjct: 1063 SRLYPSVKMTTSWKDFPDVASTLATTGSVVAALSPYDD 1100

[Close]

BLAST of Lsi01G009290 vs. TrEMBL
Match: A0A061DHE9_THECC (Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000742 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRG+A VGF+VLLGL LAANMEF GNIP+G+QVDWEA+LNFDPNSFVDSVK
Sbjct: 1002 YYWYNFMPLSRGTAVVGFIVLLGLFLAANMEFTGNIPKGVQVDWEAILNFDPNSFVDSVK 1061

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            S LYPS+KMTTSWK++PDVASTL TTGSVVAALS YDD
Sbjct: 1062 SRLYPSVKMTTSWKDFPDVASTLATTGSVVAALSPYDD 1099

[Close]

BLAST of Lsi01G009290 vs. TrEMBL
Match: A0A067KJM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12495 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRG+AAVGF+VLLGLLLAANMEF   IP+G+QVDWEA+LNFDP+SFVDS K
Sbjct: 998  YYWYNFMPLSRGTAAVGFIVLLGLLLAANMEFEEKIPKGVQVDWEAILNFDPSSFVDSAK 1057

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLK+TTSWK+YPDVAST  TTGSVVAALSSYDD
Sbjct: 1058 SWLYPSLKVTTSWKDYPDVASTFATTGSVVAALSSYDD 1095

[Close]

BLAST of Lsi01G009290 vs. TAIR10
Match: AT4G37460.1 (AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 4.3e-36
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVK
Sbjct: 955  YYWYNFMPLARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVK 1014

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Sbjct: 1015 SWLYPSLKINTSWRDHTEISSAFSTTGAVVAALSTYND 1052

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: gi|449448472|ref|XP_004141990.1| (PREDICTED: suppressor of RPS4-RLD 1 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: gi|700193375|gb|KGN48579.1| (hypothetical protein Csa_6G493870 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 937  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 996

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 997  KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1035

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: gi|659079601|ref|XP_008440343.1| (PREDICTED: tetratricopeptide repeat protein 13 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: gi|743925291|ref|XP_011006781.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X2 [Populus euphratica])

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRGSA VGF VLLGLLLAANMEF G IP+G+QVDWEA+LNFDPNSF +SVK
Sbjct: 1066 YYWYNFMPLSRGSAVVGFTVLLGLLLAANMEFTGKIPKGIQVDWEAILNFDPNSFAESVK 1125

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
             WLYPSLK+TTSWK+YPDVASTL TTGSVVAALSSYDD
Sbjct: 1126 RWLYPSLKITTSWKDYPDVASTLATTGSVVAALSSYDD 1163

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: gi|743925289|ref|XP_011006780.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X1 [Populus euphratica])

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRGSA VGF VLLGLLLAANMEF G IP+G+QVDWEA+LNFDPNSF +SVK
Sbjct: 1095 YYWYNFMPLSRGSAVVGFTVLLGLLLAANMEFTGKIPKGIQVDWEAILNFDPNSFAESVK 1154

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
             WLYPSLK+TTSWK+YPDVASTL TTGSVVAALSSYDD
Sbjct: 1155 RWLYPSLKITTSWKDYPDVASTLATTGSVVAALSSYDD 1192

The following BLAST results are available for this feature:

BLAST of Lsi01G009290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRFR1_ARATH	7.6e-35	68.37	Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1	[more]
TTC13_HUMAN	4.5e-11	38.14	Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3	[more]

BLAST of Lsi01G009290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIG1_CUCSA	2.1e-47	95.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493870 PE=4 SV=1	[more]
U5G4J2_POPTR	7.1e-40	82.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10170g PE=4 SV=1	[more]
A0A061DNS7_THECC	2.1e-39	82.65	Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao G...	[more]
A0A061DHE9_THECC	2.1e-39	82.65	Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao G...	[more]
A0A067KJM3_JATCU	2.1e-39	82.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12495 PE=4 SV=1	[more]

BLAST of Lsi01G009290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37460.1	4.3e-36	68.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi01G009290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448472\|ref\|XP_004141990.1\|	3.0e-47	95.96	PREDICTED: suppressor of RPS4-RLD 1 [Cucumis sativus]	[more]
gi\|700193375\|gb\|KGN48579.1\|	3.0e-47	95.96	hypothetical protein Csa_6G493870 [Cucumis sativus]	[more]
gi\|659079601\|ref\|XP_008440343.1\|	3.0e-47	95.96	PREDICTED: tetratricopeptide repeat protein 13 [Cucumis melo]	[more]
gi\|743925291\|ref\|XP_011006781.1\|	3.5e-40	83.67	PREDICTED: suppressor of RPS4-RLD 1 isoform X2 [Populus euphratica]	[more]
gi\|743925289\|ref\|XP_011006780.1\|	3.5e-40	83.67	PREDICTED: suppressor of RPS4-RLD 1 isoform X1 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0031348	negative regulation of defense response
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0048471	perinuclear region of cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009290.1	Lsi01G009290.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G009290	Bottle gourd (USVL1VR-Ls)	lsilsiB030
Lsi01G009290	Bottle gourd (USVL1VR-Ls)	lsilsiB087
Lsi01G009290	Cucumber (Gy14) v1	cgylsiB125
Lsi01G009290	Cucumber (Gy14) v1	cgylsiB634
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB165
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB304
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB519
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB567
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB640
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB717
Lsi01G009290	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB004
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB154
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB291
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB504
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB627
Lsi01G009290	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB080
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB236
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB325
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G009290	Cucurbita pepo (Zucchini)	cpelsiB610
Lsi01G009290	Wild cucumber (PI 183967)	cpilsiB103
Lsi01G009290	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G009290	Cucumber (Chinese Long) v2	culsiB105
Lsi01G009290	Cucumber (Chinese Long) v2	culsiB434
Lsi01G009290	Melon (DHL92) v3.5.1	lsimeB135
Lsi01G009290	Melon (DHL92) v3.5.1	lsimeB147
Lsi01G009290	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G009290	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G009290	Watermelon (Charleston Gray)	lsiwcgB153
Lsi01G009290	Watermelon (97103) v1	lsiwmB133
Lsi01G009290	Watermelon (97103) v1	lsiwmB144
Lsi01G009290	Cucumber (Gy14) v2	cgyblsiB095
Lsi01G009290	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G009290	Melon (DHL92) v3.6.1	lsimedB137
Lsi01G009290	Melon (DHL92) v3.6.1	lsimedB142
Lsi01G009290	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G009290	Silver-seed gourd	carlsiB001
Lsi01G009290	Silver-seed gourd	carlsiB161
Lsi01G009290	Silver-seed gourd	carlsiB340
Lsi01G009290	Silver-seed gourd	carlsiB364
Lsi01G009290	Cucumber (Chinese Long) v3	cuclsiB113
Lsi01G009290	Cucumber (Chinese Long) v3	cuclsiB118
Lsi01G009290	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G009290	Watermelon (97103) v2	lsiwmbB115
Lsi01G009290	Watermelon (97103) v2	lsiwmbB150
Lsi01G009290	Wax gourd	lsiwgoB156
Lsi01G009290	Wax gourd	lsiwgoB180