Lsi01G009170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G009170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_8
Locationchr01 : 7415768 .. 7417677 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTGAGGTTCTTTCGGGGTTCCTCGTAAAAATGGGAGGTGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAATATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTATCTCTCTAATTCTTCGCCTTTATTTGTCGACAATTCTTTCTTTTTTGTTGGAGTACTTTGTTTGATTTCTGAGTGGATTTCTAACTAATCAAAGCGACGACTCTGTTAGGGTGGAAGTATTCTAATTGTTTAGGGATTCTTGGGGGGGCGGGCGGGCGGCGTAGCTGTTGAGTCTATTATTTTCGTTCGTTATTCGGTTGAGATTTTGAAGATTTTGTTTGTTCTGTTATCAGGAAGTCAGCTGGAAGCAAACAAGAAAGCAATGTCTATTCAGGTATGTCTTGACAATGTTTGATGCTAATTTATGTGAAGATAGCTGAACTAGTTACTATATTGATGCCAATCTATTGGTCCATGCTCGTCTTTGTTGTGTTTATGGGAATTGTTTTTCTTTCTGCCGCTTTTACTTTAGTTTCTAGCTTATGCTGTACTTTTTGATGTCCCAGAATTGGTTCTTTCTTTTTTCGTTTTTAGCCACATTTCGATATGTTGAATTAAATATTCAGTAGATGAGTTTTTTTCGATTAGATAGTATGGGCACCTTACATGCGAATAGAATGCTGGTGTCCAATTATTAAGTAAATCTTTCAGTTCTCTTCAGGAACTTACCATTAGTGTTACGGACTTTGGAGTTCATATCTGTATCCTTAATTAAGTTAGGAAGGCCTTGCTGATGGCTATAGCCTGCAGTTAGTGTGATGGGTCGGAAGCATATAAAACTTAAGTTAAAAGTCTTGATGTTAGACTTTGAATTACACATTGAGTAGATGAATTTTTAACATTAGATAGTATGGGCACCTTACATGCGAATAGAATGCTGGCGTTCAATTATTTGGTAAATCTTTCAGTTCTCTTCAGGGAACTTACCATTAGTGTTATGGACTATGGAGTTCATATCTGTTTTGTTATGTAAGTTAGGAAGGCCTTGCCTTGCTGATGGCCATAGCCTGCAGTTAGTGTGATGGTTCAAAAGCATGTAAAACTTAATTAAAGTTAAAAGTGTTGATGGTTGGACATGTTTGGGGTGCTGACAAGCTTCATAGCCTCAGGCCGTGATAGAAGAAATAACCTGTGGCGCCACCAAGCTTCACATGCTTGGGCCGTGATAGAAGAAATAACTTGTGGCGCCACCATCATTCATATGTCCTAATTTTAGAAATGTTTTGTTCTCTCTCTCTTTTATCATGCTTGATTCCACACATGCTTGTCAATAGGTGAATCATCTTATTGTAGTTGATCTTTAGCGTTATACAGTTAACGAAGATTGTTTATAGTTCGAGATGACCTTTGAACAACTGAATTCTGTCTTGTAGATGTGGAAGTACGTGAACTAACTTTGGATATCATAATCAATAAATATATATATATATTTTAGTTTTTAATTTTAAACAATATTGTTATTTCAAGCTTGCAACTTTCTAAGCCCTCTAAGTTATTCTTGCTCGTAGAGGATTCGGAAGAACGTTATATTGGCAGTATGTGCTACTGTTGTATAGCTTTTATATAATTTACTCTTGATTTTCTTTTCTCGTGGCTGGTTACCTTTCGTATTTTGAAGAAAATTTCTCTGTAGTGCTTTAACATAAAATGGAATAATCTTATTTTGGCTTTAAGTTTCGCTTACACTAGATTCCATGGATATGTTTCAAGCATTTTCTTTGAAACTGAATGCAGTGCAAGGTATGTATGCAAACCTTTATCTGCACCACTTCAGAGGTCAAATGCAGGGAACATGCTGAGGCAAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

mRNA sequence

ATTATTGAGGTTCTTTCGGGGTTCCTCGTAAAAATGGGAGGTGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAATATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTATCTCTCTAATTCTTCGCCTTTATTTGTCGACAATTCTTTCTTTTTTGTTGGAGGATTCTTGGGGGGGCGGGCGGGCGGCGTAGCTGTTGAGTCTATTATTTTCGTTCGTTATTCGGTTGAGATTTTGAAGATTTTGTTTGTTCTGTTATCAGGAAGTCAGCTGGAAGCAAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGTATGCAAACCTTTATCTGCACCACTTCAGAGGTCAAATGCAGGGAACATGCTGAGGCAAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Coding sequence (CDS)

ATTATTGAGGTTCTTTCGGGGTTCCTCGTAAAAATGGGAGGTGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAATATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTATCTCTCTAATTCTTCGCCTTTATTTGTCGACAATTCTTTCTTTTTTGTTGGAGGATTCTTGGGGGGGCGGGCGGGCGGCGTAGCTGTTGAGTCTATTATTTTCGTTCGTTATTCGGTTGAGATTTTGAAGATTTTGTTTGTTCTGTTATCAGGAAGTCAGCTGGAAGCAAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGTATGCAAACCTTTATCTGCACCACTTCAGAGGTCAAATGCAGGGAACATGCTGAGGCAAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Protein sequence

IIEVLSGFLVKMGGGNGQKAKMAREKNMEKLKASKGEFYLSNSSPLFVDNSFFFVGGFLGGRAGGVAVESIIFVRYSVEILKILFVLLSGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK
Homology
[Close]
BLAST of Lsi01G009170 vs. Swiss-Prot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPK+DV  CFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. TrEMBL
Match: A5C9I9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021844 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.7e-23
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLE+NKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK
Sbjct: 26  GSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. TrEMBL
Match: A9PA34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12100g PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVY CFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. TrEMBL
Match: A0A0A0KLH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494960 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDV+TCFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVHTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. TrEMBL
Match: K4BUP4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAM+IQCKVCMQTFICTTSEVKCREHAEAKHPKSDVY CFPHLKK
Sbjct: 25  GSQLEANKKAMNIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK 77

[Close]
BLAST of Lsi01G009170 vs. TrEMBL
Match: A0A0B0MMQ4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_23639 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLE+NKKAMSIQCKVCMQTF+CTT+EVKCREHAEAKHPKSDVYTCFPHLKK
Sbjct: 26  GSQLESNKKAMSIQCKVCMQTFMCTTTEVKCREHAEAKHPKSDVYTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. TAIR10
Match: AT2G23090.1 (AT2G23090.1 Uncharacterised protein family SERF)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPK+DV  CFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. NCBI nr
Match: gi|659079627|ref|XP_008440357.1| (PREDICTED: uncharacterized protein At2g23090 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. NCBI nr
Match: gi|147785069|emb|CAN62217.1| (hypothetical protein VITISV_021844 [Vitis vinifera])

HSP 1 Score: 115.2 bits (287), Expect = 9.6e-23
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLE+NKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK
Sbjct: 26  GSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. NCBI nr
Match: gi|778718585|ref|XP_011657888.1| (PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDV+TCFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVHTCFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. NCBI nr
Match: gi|224067224|ref|XP_002302417.1| (hypothetical protein POPTR_0002s12100g [Populus trichocarpa])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVY CFPHLKK
Sbjct: 26  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK 78

[Close]
BLAST of Lsi01G009170 vs. NCBI nr
Match: gi|747056236|ref|XP_011074376.1| (PREDICTED: uncharacterized protein At2g23090 [Sesamum indicum])

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 90  GSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYTCFPHLKK 143
           GSQLE+NKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPK+DVYTCFPHLKK
Sbjct: 25  GSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVYTCFPHLKK 77

The following BLAST results are available for this feature:
BLAST of Lsi01G009170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y2309_ARATH1.9e-2394.34Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1[more]
BLAST of Lsi01G009170 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C9I9_VITVI6.7e-2398.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021844 PE=4 SV=1[more]
A9PA34_POPTR1.1e-2298.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12100g PE=2 SV=1[more]
A0A0A0KLH2_CUCSA1.1e-2298.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494960 PE=4 SV=1[more]
K4BUP4_SOLLC2.6e-2296.23Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0B0MMQ4_GOSAR3.3e-2294.34Uncharacterized protein OS=Gossypium arboreum GN=F383_23639 PE=4 SV=1[more]
BLAST of Lsi01G009170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23090.11.1e-2494.34 Uncharacterised protein family SERF[more]
BLAST of Lsi01G009170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079627|ref|XP_008440357.1|4.3e-23100.00PREDICTED: uncharacterized protein At2g23090 [Cucumis melo][more]
gi|147785069|emb|CAN62217.1|9.6e-2398.11hypothetical protein VITISV_021844 [Vitis vinifera][more]
gi|778718585|ref|XP_011657888.1|1.6e-2298.11PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus][more]
gi|224067224|ref|XP_002302417.1|1.6e-2298.11hypothetical protein POPTR_0002s12100g [Populus trichocarpa][more]
gi|747056236|ref|XP_011074376.1|2.1e-2296.23PREDICTED: uncharacterized protein At2g23090 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026939At2g23090-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G009170.1Lsi01G009170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026939At2g23090-likeGENE3DG3DSA:4.10.1050.10coord: 90..140
score: 1.1E-21coord: 12..36
score: 3.
IPR026939At2g23090-likeunknownSSF118359Expressed protein At2g23090/F21P24.15coord: 90..141
score: 1.31E-20coord: 10..35
score: 7.4
NoneNo IPR availablePANTHERPTHR33788FAMILY NOT NAMEDcoord: 89..140
score: 4.4E-46coord: 13..35
score: 4.4
NoneNo IPR availablePANTHERPTHR33788:SF2SUBFAMILY NOT NAMEDcoord: 89..140
score: 4.4E-46coord: 13..35
score: 4.4
NoneNo IPR availablePFAMPF12907zf-met2coord: 103..140
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G009170CmaCh16G003290Cucurbita maxima (Rimu)cmalsiB304
Lsi01G009170ClCG01G017360Watermelon (Charleston Gray)lsiwcgB127
Lsi01G009170CsaV3_6G043890Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G009170Watermelon (Charleston Gray)lsiwcgB153
Lsi01G009170Watermelon (97103) v1lsiwmB133
Lsi01G009170Watermelon (97103) v1lsiwmB144
Lsi01G009170Cucumber (Gy14) v2cgyblsiB095
Lsi01G009170Cucumber (Gy14) v2cgyblsiB398
Lsi01G009170Melon (DHL92) v3.6.1lsimedB137
Lsi01G009170Melon (DHL92) v3.6.1lsimedB142
Lsi01G009170Melon (DHL92) v3.6.1lsimedB163
Lsi01G009170Silver-seed gourdcarlsiB001
Lsi01G009170Silver-seed gourdcarlsiB340
Lsi01G009170Silver-seed gourdcarlsiB364
Lsi01G009170Cucumber (Chinese Long) v3cuclsiB113
Lsi01G009170Cucumber (Chinese Long) v3cuclsiB118
Lsi01G009170Watermelon (97103) v2lsiwmbB115
Lsi01G009170Watermelon (97103) v2lsiwmbB150
Lsi01G009170Wax gourdlsiwgoB156
Lsi01G009170Wax gourdlsiwgoB180
Lsi01G009170Bottle gourd (USVL1VR-Ls)lsilsiB030
Lsi01G009170Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi01G009170Cucumber (Gy14) v1cgylsiB125
Lsi01G009170Cucumber (Gy14) v1cgylsiB634
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB165
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB519
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB567
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB597
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB640
Lsi01G009170Cucurbita maxima (Rimu)cmalsiB786
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB004
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB154
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB291
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB504
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB582
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB627
Lsi01G009170Cucurbita moschata (Rifu)cmolsiB774
Lsi01G009170Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G009170Cucurbita pepo (Zucchini)cpelsiB325
Lsi01G009170Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G009170Cucurbita pepo (Zucchini)cpelsiB610
Lsi01G009170Wild cucumber (PI 183967)cpilsiB103
Lsi01G009170Wild cucumber (PI 183967)cpilsiB439
Lsi01G009170Cucumber (Chinese Long) v2culsiB105
Lsi01G009170Cucumber (Chinese Long) v2culsiB434
Lsi01G009170Melon (DHL92) v3.5.1lsimeB135
Lsi01G009170Melon (DHL92) v3.5.1lsimeB147
Lsi01G009170Melon (DHL92) v3.5.1lsimeB156