Lsi01G008890 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G008890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMYB transcription factor
Locationchr01 : 7165905 .. 7172738 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTAGCTTTATGCAATTCTCAGTTCTTTCTTCTTACCTTGATGCCTCTACATGATTGTTTTTTTGTTGACAAAAATGGTTCTATACAATCTGAAATTTTCATTTGTTCTATGTAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAATTCTCCTACTATAATAGAGAAATTATAGCCACCAAGGGGCGGCCTCATTGGCAAGGACTTGGGGTCTCTTGGTCATACCGGCTTAAAGGTTCCAAGTTCGAATCTTTGGGTGAGCTTAATATCAAAAACTCTTGCAGGGTGTTTGGCCCAAGGAGTTGGAGTTGGGAACTTCACTCCTTGTTTGGTCAAAGAAGTTCGTGGGTCCCACAACTAAAAACATCAATTTTATGCTTTATTAACTCCTTACGCTGTGGGTCCCACGACTTCGTCACTCTTTAGACTTCACAACTCCTTCTCTTTGCCCCAAACACCGCCTTGATGTCTTTCAAGTCTAGGTTTGGGGCAAAGCTCCAACTCCTGGTTATTTAAAAAAAAAATAATACAGGAACTATATGGAACAATGATTATTATAGATGCTCTTGAGTCTCAAGACTGTTGAGCTGCAAAGCTAATTGAATATTACTGGTAAGCCTGTGCTAATGTCTTCGCGAGGAGGAGGCCTGAAGGAGCAGTGGCTTAGGAGATTGTAGAATAGCAAGGGTAATTGGAAGGATGTTTTTTAACTTTTATGCACAAGAATGTGTCATTCCATGGTGGGGAGTGTTCATAAGGTATGTCTAGGGGGAGAGTAATGTTGTAACTACTATTTAAACAAAACAAATCGAAAGAGGAGGGGGGAAGGGTAAGCTGGTTACGATAGCTAGTAGGAGAGAGCAAACCACTCAAAATTGTGTGACCCCTGCTGTTTGAGCAATTCTCTTGGCAGCCAATTCTTGTAATTGTTTGGTTTGGGAAACAAATTCATTGAAGTGAGATTTTATCAATGGGACACAAGCCCATGCTCGAGTAGACAGGCCATGTTGATGATGAGGTGATTTGTTTGTGCCTTTTTTAATAGCATTTTGGTTTGTAGCCCTAGTCTGGATACTTGTGTCCAGCATTTAGATGCATTGCCGCATGATCAAAGGCTATATGCTAACCTCCAGTAATGTGTATTTGCCTAAATGGAACTGGAGTACCTCAGTCATATATTACGAAGGGTGGGGTATCAGCTGATCAGCAGAAAATTCAATCCCTGCGTGTCTTGTGTGTTTCAAGAATGTTGAAGGAACTAATGTGGTTCGTTGGTTTAACTGGGTACTAAAGAAACTTTATCAAAGATAATGAACACATTTTGTGGCCACTCATGTAATTATTGAAAAGGGACCAATTCATAGATTCACCTAAGGCCAACGCTTGTCAGCAGCTAAAAGGAACCATGGTAAATTTTTAGGTTCTTTCTTTACCGAAATTTGAGCATTTATTTGTTGTTGAGGTTGGTGCCTACGTTGTGGGGGTTTGGCAGTTTTAATGCAAAATGAAAAACCTATTGCTTTTTTCATTAGGCGTTGGGTCAGTGAGGAGTAAGGGCAACCTTGGTGTATGGAAGAGAACTACTTGCAAGAGTGCTAGCCATCCCGAGAATGGAGTCCTGACACGGGTGAGTCATATAGAGAGTCACTATAAGAGTCTGAAATTCTTGATAAGATGATGGTGGGTAGAACTCTAAGTGATTTAATTGGAGGAAACTCCATTCTGTGCAGCCTTGACTATGGAGAATATCTTTGACCCCAAGGTACTCAATGGAGCATTGGAGAAGAAATGCTTTTTTCTAACATTAAGTCCAAACTACAGGACTGTTAGAAACTAGAATTTGAAATAGAAAATAACAGAAAATAGCAGCAAACTGAAGGAAGATTACAGTACTCTAAACACAGAGAGAAGCTTGGATTCCAAGAAACTATTTATGGATTCACTACTTACTTCCTACTCCCCTAACCCACACTGTATATAACCACCATTCATTAAGCAACCCTTTATCCAATGATCAATACGCCCTTAATATCCTAAAAGTATTTCGAATATTCATTCTAATAATATTTCTAACAAGAACCAATCTATGATTTTCTCTGGGTTTTAACTGGGATGGAATTATCCTAACTTTTCATAGAAGCTAATTGGGGTGCTAAAAGGAACCTTTTGCTTTGTGAAGTTCCTAGAAATGATCAGCTGGGAATTTTTTCTGGGAGGAACGGAAACAGATTTCACACTAAAGTGCGATCAACAAACGGATTATTTGTTGATGGCAGCTCTGTAGGATTGGTACTACCTTTATCTCAGCAAGTCTAGGAGGAAATAACAGTGGATTTTATGGAAGGCCACTCCGAAGGAAGGTAAACCATTCTTGTGGTGGCGGATAGGGCTTATAAGTACCATGTATGTCTTCTTTGCTGCATCCCTTCTCAGCTTGAGTAGCAAGGGACCTTTTTCCTGAAAGAGGCATATGGCTCCGTGGATTTTTTTTCCAATCATATCCGACAAAGAAAAGAATTTCCTAGTTTTTTTTGGCAACAGCTATTCAGGAAGCTGGAAACACAGTTGAAGAACAGTAGTTCCTTTCACCTACAAATGGATCGCCAGTCCAAAGTTGTAAACAGACTGCTTAGAAGCAGATCCTTGACGCAGCACAGATAAACCAAAACAGTGGATGTGCTGGATGCATTTGGGCCAAAATTGTTATAACAATTCATTCCTTAAAACAACTTCTTTTAAGGCACTCTGTGGTCAAGACCTAATCACAGTTAACTGTTGGGATGGATTTTTTTTTTTTTTTTTTTTTTTTTAAATGAGAAAATCTCTTTTTAAGTTTATATGTCTTTTTTTGAGTAATGTGATTGCTTAAAGATGTTAGACTTGTAAGTAGTTGATTTAACTCAAGTTTTTTAATTTTTTAAACTAATTACATCCTCCAGATTTTTTTTTTTTAATTAATTATATTAACATCTTAGGAGAGAATACAATATTTAGTTTTTTAGTAAAAGGTTTCCATTTTTTGGTTACAGAAGCATANAGTTCCTTTCACCTACAAATGGATCGCCAGTCCAAAGTTGTAAACAGACTGCTTAGAAGCAGATCCTTGACGCAGCACAGATAAACCAAAACAGTGGATGTGCTGGATGCATTTGGGCCAAAATTGTTATAACAATTCATTCCTTAAAACAACTTCTTTTAAGGCACTCTGTGGTCAAGACCTAATCACAGTTAACTGTTGGGATGGATTTTTTTTTTTTTTTTTTTTTTTTGAATGAGAAACAGTCAATCATAATTTCATTGATGGTATGAAATTACAAAAGGGACCACATGTGCCGAGAGAGATTACATAATGCTATTCCATTGAGATATGAGAGATGTGAGATTGTAATCACATAAAAAGAAAGTGAATTTACACCATGAGAGAGGTGTATACAAAAGGTGATAAAAAAAATTGTGTGAAATCCGATTCTCTATCTTCAAATATACGATGATTCCGCTCAATCCAAATGAGCCAAAAGTAGGCTTTGATGATGTAGGTCCACATAATTGCTTTCTCATTCTTAAATGGATGGCCAATAAGAAGCATATTCGGAAGGGTGAGAGGGTCATTAGGAAACACCACATGACTGTTGGGACAGATTTGAATTGGAGATCTTGAACTTGAGTTTGTGAAAGACTCTTGCCCCTCCTCTGCTGAGCCTTTTCTTATCTCCTTTGCAAGAAGCTCTGCAAACCTTCTTTCAAATTCATCCACTTCAAGGTGACAAAGCTGAGCCACTAATAGAGTGGCGAAGGACCATGTTGCACATAAGCCACTAGGTTGCCGTCCTTCCCTTTTTCTTTGAATACGAGTTTCAAAGGAGAAAATGATTTTCTGAATCAAAATCATAGTCCATGAAGAAATTTCTTAATGCTTCTTTATGGTAGGGAGAGCTCTTAGATCTTCAAACTTTACAGAGTCTCTACATTGTGCCCTTCATTTCAAAGCGTGACATATATTATATTCTAGGCGTGACATATATGTGTGAAGACATTGGTCAATATGAAGAGGAAGGATTTGAGTTTTGTAGTAGGTGACTTAGTTTTCCTTTTCCAGAAGTTTTCCCCTATAGATGACAATCTCTTGTTCAGTGTTCAAATAAGAAACTTGCAGCCACCTTCTGCAGTCATTTTCCCAAATAGGATTAGGATTAGGTGTGTGGTGGCATATCAATCGACTGTACCAGCTACAAGTGCTATGCCTTTGGTGTTTCATGTGTCCCTACTTTGTCCAAATGGTGGCTCTACATTTAATGCTTGCCTCTTTCACAGATTCTTAACTTTGAATGGGATTTGCTGTGGAACCATAAACAATATCGAATGTCTTCAAAAAGAGTTTGCTCAGTCAAATTGTGATGGAGGGCTTTAACTGACCCTGATGCTAGAGTCATAATAACATGGCACATTGAACGCTTTAAATGTGCCAAGGTTATGTGGTTAAGAAGTTCTTTAAGGGCATTTTGAAACCTTCCCACCAAGTATTTTATTGAAGGCACAATTTCAGAAAATATTTTTGAAGGATGGTCTATTATGCCGTGCATAAAGAATTCATGCTCAAATTAGAGTATTATTTTCCTTTTCGTCAAGGCACCGTTGTAAATTGTACTGCAAGTAATACAGAATTTGTTATTAAAAAAAAATAACGAAGAAAATGGCAAACTTGACGCTGGCAAATGAATGGTAATGCTGGAATTTGCTATTAGATCATTTATATGGATTTTGTTTGGGTAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTTATCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCAGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGTAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGGTAATGCAACGCACAGCTTCAGTCATAAATTTCTATGTAGTTAATACTCCTGCGTGTCTTGTTTAATTAGCACTGTAAACTTACATATGTACATGTGTTGTCATGATTTTTCATAAACTAATCTCAACTTAAAAAAGACAACGAAAAGCATAATATAAATTGACCGTTGGCATCTTTGCTGACTTTAAGAAAATTTCTTCATTCACTTTTTGTTTCCCTTGAGGTCTGCTATATTTAGAGGTTAACAACTCAACTTCCACTTCACTACCCCTCGTGATCAAATCACTTGGCTATTGACCAAGTTAGTTTGAGTTCTCATATCAATGATTCCACATTTGATTTTTTGTTATTCACTGGGTTAACCATCTCGTGATGTAACATTTTATTCTCCTTTTTCTTGCATTGATGTCTTAGCATTATTGGACTTGTTACGAAACAACCATGAGAAGGAAAATAAAATTCAAGCCTTGATTTTTCTTTTTGTGTTACCTAACTTTTTCATGTTGCTCCCTTTTATTTTATTTTATGTTATTTTATTTTGGCAGATAACAAAACTTTGCAATGACAACTGTAGGCAATGTGTTCTGAGAAGATGAAGTTGCTGCTGCTGCATTTCCATGTGCAAGTGATTGTAACTAAACTGTAGATATTGTTAGCATTGTAAATCTGCAGAATATGATTACCTTATGAGCAAGACGGCTGCTGGGGATCATATCATCAGAAGTGTATGTCGGTAATGTGTTTTTAGAATCAAACAAAGAGTAAAGGATTTTGGAGAGAGCAATGCGTTCTTAATCTGAAAAACGGTGTTTTCTCGGTCGTCGTCTTTATGATTCTAAAAAAAATCAAATCTGTAAATTAAGATTTTCTGTTCACCCCACACAACCCAATCATGCTTTCTCGGTAGACCATTTTTGTGATTCAATGAATGATTCTGGTAAAACATGAAGACATTGACATCTTTCAGCGTAAAACAGCCACAAGAGCTAGGGGTGTACATCGGTCTGTCGTATCGGTTTTAGAGGGGAACCGGCACCGAAAATTGACATGTCAGTTTACTAAAATATAAAACCGATTTTGAGAAGTTTGTGCGTAGCAACCGACCGTCGGTCGGTTTGGTCGGTTTTAATTTTATTTTTTTAAAAAAATTCTTGCATTAGTGTTAAATAAATATGAGGGCTCTTGGGCTGGGATTTTGGGAACTAAGGTGGGCTGGGTCTGCATTCTTTATTAATAAGAAATTAATAACACTAATAATAATAAGTAAATAAAATCTGCATTCTTTATTAATAAGAAATTAATAACACTAATAATAATAAGTAAATAAAAATATAAGATCTATATGTCGGGCGGTCGGATCCGTCGGTTTCAGTCGGTCAAATCGGTTTTCGGTGGCTTTGTGTACACCCCTAACCAGAGCTAACATCTTAATTTGAATGGTGTGTCTACAAGTAAAAGCCAGATTAAATCTGATTGCGTTTTTATAAAATAAAAGACGTATTAACTCAAATTGCTGATTAAGTGTTTCTGCAGCTATGGAAATGAACGCCACTTACAAGAGAAACGAATCAACCCATTATTAGTTTTGGTTACTGGCTCTGAAGAGTTATTGCCATCTCTTGTTTGA

mRNA sequence

ATGACCTTAGCTTTATGCAATTCTCAGTTCTTTCTTCTTACCTTGATGCCTCTACATGATTGTTTTTTTGTTGACAAAAATGGCGTTGGGTCAGTGAGGAGTAAGGGCAACCTTGGTGTATGGAAGAGAACTACTTGCAAGAGTGCTAGCCATCCCGAGAATGGAGTCCTGACACGGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTTATCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCAGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGTAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGAATATGATTACCTTATGAGCAAGACGGCTGCTGGGGATCATATCATCAGAAGTGTATGTCGCTATGGAAATGAACGCCACTTACAAGAGAAACGAATCAACCCATTATTAGTTTTGGTTACTGGCTCTGAAGAGTTATTGCCATCTCTTGTTTGA

Coding sequence (CDS)

ATGACCTTAGCTTTATGCAATTCTCAGTTCTTTCTTCTTACCTTGATGCCTCTACATGATTGTTTTTTTGTTGACAAAAATGGCGTTGGGTCAGTGAGGAGTAAGGGCAACCTTGGTGTATGGAAGAGAACTACTTGCAAGAGTGCTAGCCATCCCGAGAATGGAGTCCTGACACGGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTTATCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCAGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGTAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGAATATGATTACCTTATGAGCAAGACGGCTGCTGGGGATCATATCATCAGAAGTGTATGTCGCTATGGAAATGAACGCCACTTACAAGAGAAACGAATCAACCCATTATTAGTTTTGGTTACTGGCTCTGAAGAGTTATTGCCATCTCTTGTTTGA

Protein sequence

MTLALCNSQFFLLTLMPLHDCFFVDKNGVGSVRSKGNLGVWKRTTCKSASHPENGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQEYDYLMSKTAAGDHIIRSVCRYGNERHLQEKRINPLLVLVTGSEELLPSLV
BLAST of Lsi01G008890 vs. Swiss-Prot
Match: SMH6_MAIZE (Single myb histone 6 OS=Zea mays GN=SMH6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           +G L +V  KYRIAP+SP S RR+  + LLED Q +  K    + K +T+SQVD+EL++M
Sbjct: 175 SGKLIKVNRKYRIAPSSPNSERRSPKMPLLEDVQREPVKIWSDDTKTLTRSQVDAELARM 234

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
             MTAEEA++AAARAVAEAEA + EAE AA+EAE AEAEA+ AQ FAEAA   L+ R
Sbjct: 235 ATMTAEEASVAAARAVAEAEAIMAEAEAAAKEAEAAEAEAQAAQAFAEAAFLTLKNR 291

BLAST of Lsi01G008890 vs. Swiss-Prot
Match: TRB2_ARATH (Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-20
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNS-PLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELS 113
           NG L ++KHKYR + N  P   R+ AP L LE + + D +K E++    +TK +VD EL 
Sbjct: 175 NGTLVKIKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELY 234

Query: 114 KMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
            +K MTA+EAA AAARAVAEAE AI EAE+AA+EAE AEAEAE AQ+FA+AAMKAL+ R
Sbjct: 235 MIKGMTAQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALKFR 293

BLAST of Lsi01G008890 vs. Swiss-Prot
Match: TRB1_ARATH (Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-17
Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 1

Query: 55  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSEL 114
           G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+
Sbjct: 172 GKLVKVKRKYRIPNSTPLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEI 231

Query: 115 SKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
           ++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AEAEAE AQ FAE A K L+ R
Sbjct: 232 ARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGR 291

BLAST of Lsi01G008890 vs. Swiss-Prot
Match: TRB3_ARATH (Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1

Query: 55  GVLTRVKHKYRIAPNSPLSGR-RNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 114
           G L + KHKYRI+ N    G  + +P LLLE  + ++ K E++ VK +TKSQV  E+  M
Sbjct: 174 GTLVKKKHKYRISQNYMAEGEGQRSPQLLLEGNKENTPKPEENGVKNLTKSQVGGEVMIM 233

Query: 115 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
             MT +EAA AAARAVAEAE A+ EAE AAREA++AEAEAE A +FA+AAMKA++ R
Sbjct: 234 G-MTEKEAAAAAARAVAEAEFAMAEAEEAAREADKAEAEAEAAHIFAKAAMKAVKYR 289

BLAST of Lsi01G008890 vs. Swiss-Prot
Match: SMH5_MAIZE (Single myb histone 5 OS=Zea mays GN=SMH5 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 61/117 (52.14%), Postives = 73/117 (62.39%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           +G L +V  KYRIAP+            LLED Q +  K      + +T+SQVD+EL +M
Sbjct: 176 SGKLLKVNRKYRIAPS------------LLEDVQREPLKLGSDASRTLTRSQVDAELVRM 235

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
             MT E AA AAA AVAEAEA + EAE AAREAE AEAEA  AQ FAEAA+  L+ R
Sbjct: 236 ATMTVEAAAAAAAHAVAEAEAIMAEAEAAAREAEAAEAEARAAQAFAEAAVLTLKNR 280

BLAST of Lsi01G008890 vs. TrEMBL
Match: A0A0A0KJQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495710 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.3e-51
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKM
Sbjct: 172 NGKLIKVKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFP 173
           KVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFP
Sbjct: 232 KVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFP 291

Query: 174 NRSPIQKVLLQ 185
           NRSPIQKVLLQ
Sbjct: 292 NRSPIQKVLLQ 302

BLAST of Lsi01G008890 vs. TrEMBL
Match: A0A061DIM4_THECC (Homeodomain-like/winged-helix DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_000807 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.8e-28
Identity = 81/117 (69.23%), Postives = 95/117 (81.20%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L ++KHKYRIAP S +S  R +PLLLLE +Q DSSK +K  + I+TKSQVD+ELSKM
Sbjct: 172 NGTLIKIKHKYRIAPRSTVSEARRSPLLLLEGRQKDSSKLDKKGINILTKSQVDAELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
           + MTAEEAA AAARAVAEAE AI EAE AAREAE AEAEAE A++FA+AA KAL+ R
Sbjct: 232 RSMTAEEAAAAAARAVAEAEVAIAEAEEAAREAEAAEAEAEAAKIFAKAAEKALKAR 288

BLAST of Lsi01G008890 vs. TrEMBL
Match: B9SH10_RICCO (Histone H1.1, putative OS=Ricinus communis GN=RCOM_0580970 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLS-GRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSK 113
           +G L +VKHKYRIAP+S +S GRR++PL+ +E KQ DS K+EKS  KI+TKSQVD ELSK
Sbjct: 173 SGKLIKVKHKYRIAPSSAVSEGRRSSPLVRIEGKQKDSPKSEKSNTKILTKSQVDQELSK 232

Query: 114 MKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTF 173
           +K MTAEEAA AAA+AVAEAEAAI EAE AAR+A+ AEAEAE AQVFA+AA+KA + RT 
Sbjct: 233 IKGMTAEEAAAAAAKAVAEAEAAIAEAEAAARDADAAEAEAEAAQVFAKAAIKAFKYRT- 292

Query: 174 PNRSPIQKVLLQEY 187
             R  +  VL Q +
Sbjct: 293 --RHLVNTVLSQVF 303

BLAST of Lsi01G008890 vs. TrEMBL
Match: M5VZE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009220mg PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 83/118 (70.34%), Postives = 99/118 (83.90%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSG-RRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSK 113
           NG L +VKH+YRIAP+S  S  RR++ +LLLE KQ DSS+ +KS V I+TKSQVD++LSK
Sbjct: 173 NGKLIKVKHRYRIAPSSASSEKRRSSSMLLLEGKQKDSSRADKSNVNILTKSQVDADLSK 232

Query: 114 MKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
           M+ MTA+EAA AAA+AVAEAEAAI  AE AAREAE AEAEAE AQVFA+AAMKAL+CR
Sbjct: 233 MRSMTAQEAAAAAAQAVAEAEAAIAAAEEAAREAEAAEAEAEAAQVFAKAAMKALKCR 290

BLAST of Lsi01G008890 vs. TrEMBL
Match: A0A067KJS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12545 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 87/131 (66.41%), Postives = 99/131 (75.57%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLS-------------GRRNAPLLLLEDKQMDSSKTEKSEVKI 113
           NG L +VKHKYR+AP+S +S             GRRN+P LL+E KQ DSSKTE +  KI
Sbjct: 173 NGKLVKVKHKYRLAPSSAVSDGRRNSQHLAVSEGRRNSPHLLVEGKQKDSSKTEMNTTKI 232

Query: 114 ITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFA 172
           +TKSQVD ELSK+K MTA EAA AAA+AVAEAEAAI EAE AAREAE AEAEAE AQVFA
Sbjct: 233 LTKSQVDQELSKIKGMTALEAAAAAAKAVAEAEAAIAEAEEAAREAEAAEAEAEAAQVFA 292

BLAST of Lsi01G008890 vs. TAIR10
Match: AT5G67580.1 (AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-21
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNS-PLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELS 113
           NG L ++KHKYR + N  P   R+ AP L LE + + D +K E++    +TK +VD EL 
Sbjct: 175 NGTLVKIKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELY 234

Query: 114 KMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
            +K MTA+EAA AAARAVAEAE AI EAE+AA+EAE AEAEAE AQ+FA+AAMKAL+ R
Sbjct: 235 MIKGMTAQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALKFR 293

BLAST of Lsi01G008890 vs. TAIR10
Match: AT1G49950.3 (AT1G49950.3 telomere repeat binding factor 1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-18
Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 1

Query: 55  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSEL 114
           G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+
Sbjct: 172 GKLVKVKRKYRIPNSTPLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEI 231

Query: 115 SKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
           ++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AEAEAE AQ FAE A K L+ R
Sbjct: 232 ARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGR 291

BLAST of Lsi01G008890 vs. TAIR10
Match: AT3G49850.1 (AT3G49850.1 telomere repeat binding factor 3)

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-18
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1

Query: 55  GVLTRVKHKYRIAPNSPLSGR-RNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 114
           G L + KHKYRI+ N    G  + +P LLLE  + ++ K E++ VK +TKSQV  E+  M
Sbjct: 174 GTLVKKKHKYRISQNYMAEGEGQRSPQLLLEGNKENTPKPEENGVKNLTKSQVGGEVMIM 233

Query: 115 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECR 171
             MT +EAA AAARAVAEAE A+ EAE AAREA++AEAEAE A +FA+AAMKA++ R
Sbjct: 234 G-MTEKEAAAAAARAVAEAEFAMAEAEEAAREADKAEAEAEAAHIFAKAAMKAVKYR 289

BLAST of Lsi01G008890 vs. NCBI nr
Match: gi|778718704|ref|XP_011657903.1| (PREDICTED: telomere repeat-binding factor 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-51
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKM
Sbjct: 172 NGKLIKVKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFP 173
           KVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFP
Sbjct: 232 KVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFP 291

Query: 174 NRSPIQKVLLQE 186
           NRSPIQKVLLQ+
Sbjct: 292 NRSPIQKVLLQD 303

BLAST of Lsi01G008890 vs. NCBI nr
Match: gi|659079709|ref|XP_008440400.1| (PREDICTED: telomere repeat-binding factor 2 isoform X1 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 3.6e-51
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKM
Sbjct: 172 NGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKSEVKIITKSQVDLELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFP 173
           KVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFP
Sbjct: 232 KVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFP 291

Query: 174 NRSPIQKVLLQE 186
           NRSPIQKVLLQ+
Sbjct: 292 NRSPIQKVLLQD 303

BLAST of Lsi01G008890 vs. NCBI nr
Match: gi|778718710|ref|XP_011657905.1| (PREDICTED: telomere repeat-binding factor 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 4.8e-51
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKM
Sbjct: 172 NGKLIKVKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFP 173
           KVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFP
Sbjct: 232 KVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFP 291

Query: 174 NRSPIQKVLLQ 185
           NRSPIQKVLLQ
Sbjct: 292 NRSPIQKVLLQ 302

BLAST of Lsi01G008890 vs. NCBI nr
Match: gi|659079713|ref|XP_008440403.1| (PREDICTED: telomere repeat-binding factor 2 isoform X2 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 8.1e-51
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1

Query: 54  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKM 113
           NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKM
Sbjct: 172 NGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKSEVKIITKSQVDLELSKM 231

Query: 114 KVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFP 173
           KVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFP
Sbjct: 232 KVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFP 291

Query: 174 NRSPIQKVLLQ 185
           NRSPIQKVLLQ
Sbjct: 292 NRSPIQKVLLQ 302

BLAST of Lsi01G008890 vs. NCBI nr
Match: gi|778718721|ref|XP_011657906.1| (PREDICTED: telomere repeat-binding factor 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 1

Query: 60  VKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAE 119
           VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKMKVMTAE
Sbjct: 150 VKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKMKVMTAE 209

Query: 120 EAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPNRSPIQ 179
           EAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVFAEAAMKALECRTFPNRSPIQ
Sbjct: 210 EAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQ 269

Query: 180 KVLLQE 186
           KVLLQ+
Sbjct: 270 KVLLQD 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMH6_MAIZE3.0e-2158.12Single myb histone 6 OS=Zea mays GN=SMH6 PE=2 SV=1[more]
TRB2_ARATH4.3e-2057.98Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2 PE=1 SV=1[more]
TRB1_ARATH4.5e-1754.17Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1[more]
TRB3_ARATH1.3e-1655.56Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3 PE=1 SV=1[more]
SMH5_MAIZE1.0e-1352.14Single myb histone 5 OS=Zea mays GN=SMH5 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KJQ2_CUCSA3.3e-5193.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495710 PE=3 SV=1[more]
A0A061DIM4_THECC8.8e-2869.23Homeodomain-like/winged-helix DNA-binding family protein isoform 1 OS=Theobroma ... [more]
B9SH10_RICCO2.0e-2764.93Histone H1.1, putative OS=Ricinus communis GN=RCOM_0580970 PE=3 SV=1[more]
M5VZE6_PRUPE2.6e-2770.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009220mg PE=3 SV=1[more]
A0A067KJS3_JATCU2.6e-2766.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12545 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G67580.12.4e-2157.98 Homeodomain-like/winged-helix DNA-binding family protein[more]
AT1G49950.32.5e-1854.17 telomere repeat binding factor 1[more]
AT3G49850.17.4e-1855.56 telomere repeat binding factor 3[more]
Match NameE-valueIdentityDescription
gi|778718704|ref|XP_011657903.1|2.1e-5193.18PREDICTED: telomere repeat-binding factor 2 isoform X1 [Cucumis sativus][more]
gi|659079709|ref|XP_008440400.1|3.6e-5193.18PREDICTED: telomere repeat-binding factor 2 isoform X1 [Cucumis melo][more]
gi|778718710|ref|XP_011657905.1|4.8e-5193.89PREDICTED: telomere repeat-binding factor 2 isoform X2 [Cucumis sativus][more]
gi|659079713|ref|XP_008440403.1|8.1e-5193.89PREDICTED: telomere repeat-binding factor 2 isoform X2 [Cucumis melo][more]
gi|778718721|ref|XP_011657906.1|1.2e-4995.24PREDICTED: telomere repeat-binding factor 2 isoform X3 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G008890.1Lsi01G008890.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 122..159
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G008890Cucumber (Chinese Long) v3cuclsiB113
Lsi01G008890Cucumber (Chinese Long) v3cuclsiB283
Lsi01G008890Cucumber (Chinese Long) v3cuclsiB462
Lsi01G008890Watermelon (97103) v2lsiwmbB115
Lsi01G008890Watermelon (97103) v2lsiwmbB150
Lsi01G008890Wax gourdlsiwgoB156
Lsi01G008890Wax gourdlsiwgoB180
Lsi01G008890Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi01G008890Bottle gourd (USVL1VR-Ls)lsilsiB076
Lsi01G008890Cucumber (Gy14) v1cgylsiB125
Lsi01G008890Cucumber (Gy14) v1cgylsiB567
Lsi01G008890Cucumber (Gy14) v1cgylsiB634
Lsi01G008890Cucurbita maxima (Rimu)cmalsiB016
Lsi01G008890Cucurbita maxima (Rimu)cmalsiB304
Lsi01G008890Cucurbita maxima (Rimu)cmalsiB597
Lsi01G008890Cucurbita maxima (Rimu)cmalsiB640
Lsi01G008890Cucurbita maxima (Rimu)cmalsiB786
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB004
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB154
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB291
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB392
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB582
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB627
Lsi01G008890Cucurbita moschata (Rifu)cmolsiB774
Lsi01G008890Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G008890Cucurbita pepo (Zucchini)cpelsiB325
Lsi01G008890Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G008890Wild cucumber (PI 183967)cpilsiB103
Lsi01G008890Wild cucumber (PI 183967)cpilsiB261
Lsi01G008890Wild cucumber (PI 183967)cpilsiB439
Lsi01G008890Cucumber (Chinese Long) v2culsiB105
Lsi01G008890Cucumber (Chinese Long) v2culsiB262
Lsi01G008890Cucumber (Chinese Long) v2culsiB434
Lsi01G008890Melon (DHL92) v3.5.1lsimeB135
Lsi01G008890Melon (DHL92) v3.5.1lsimeB147
Lsi01G008890Melon (DHL92) v3.5.1lsimeB156
Lsi01G008890Watermelon (Charleston Gray)lsiwcgB127
Lsi01G008890Watermelon (Charleston Gray)lsiwcgB153
Lsi01G008890Watermelon (97103) v1lsiwmB133
Lsi01G008890Watermelon (97103) v1lsiwmB144
Lsi01G008890Cucumber (Gy14) v2cgyblsiB095
Lsi01G008890Cucumber (Gy14) v2cgyblsiB246
Lsi01G008890Cucumber (Gy14) v2cgyblsiB398
Lsi01G008890Melon (DHL92) v3.6.1lsimedB142
Lsi01G008890Melon (DHL92) v3.6.1lsimedB153
Lsi01G008890Melon (DHL92) v3.6.1lsimedB163
Lsi01G008890Silver-seed gourdcarlsiB001
Lsi01G008890Silver-seed gourdcarlsiB293
Lsi01G008890Silver-seed gourdcarlsiB340
Lsi01G008890Silver-seed gourdcarlsiB364
Lsi01G008890Silver-seed gourdcarlsiB707