Lsi01G008100 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G008100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMADS-box transcription factor
Locationchr01 : 6424709 .. 6425024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGTAAGAAGAACCCTTTTCCACAGCATACTAATATAAATTGTGTCCTTTAAATCCCTTTGTAACTTTCGGCGGCGGTGGTTTGCAGGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

mRNA sequence

ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

Coding sequence (CDS)

ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

Protein sequence

MCMQSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS
Homology
[Close]
BLAST of Lsi01G008100 vs. Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-07
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 1 

Query: 7   ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVS 66
           +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   
Sbjct: 159 QLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNA--G 218

Query: 67  NSNGPPQDLESSDTSLKLG 72
           NS G P D ESSDTSL+LG
Sbjct: 219 NSTGAPVDSESSDTSLRLG 235

[Close]
BLAST of Lsi01G008100 vs. TrEMBL
Match: A0A0A0KIR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499000 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.1e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 112 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 171

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 172 SDTSLKLG 179

[Close]
BLAST of Lsi01G008100 vs. TrEMBL
Match: A0A0H3U1Y8_PAESU (SVP OS=Paeonia suffruticosa PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +  +LM+EN+RL+Q  E  N  +H+  + E +V E+GQSS S+T  C  NSNGPPQD +S
Sbjct: 158 KGVQLMEENRRLRQMTEISNGKKHVAADLEHMVCEEGQSSESITNVC--NSNGPPQDYDS 217

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 218 SDTSLKLG 223

[Close]
BLAST of Lsi01G008100 vs. TrEMBL
Match: E3NYP9_SOYBN (Short vegetative phase-like protein OS=Glycine max GN=SVPL PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-09
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 8   LMDENKRLKQQ-AEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDT 67
           LM+EN+RLK+  A  +N  RH G E E  V+++GQSS SVT  C  NS GPPQD ESSDT
Sbjct: 160 LMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVC--NSTGPPQDFESSDT 219

Query: 68  SLKLG 72
           SLKLG
Sbjct: 220 SLKLG 222

[Close]
BLAST of Lsi01G008100 vs. TrEMBL
Match: A0A0B2NY65_GLYSO (MADS-box protein SVP OS=Glycine soja GN=glysoja_000085 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-09
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 8   LMDENKRLKQQ-AEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDT 67
           LM+EN+RLK+  A  +N  RH G E E  V+++GQSS SVT  C  NS GPPQD ESSDT
Sbjct: 160 LMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVC--NSTGPPQDFESSDT 219

Query: 68  SLKLG 72
           SLKLG
Sbjct: 220 SLKLG 222

[Close]
BLAST of Lsi01G008100 vs. TrEMBL
Match: F6M3V2_BETPL (MADS-box protein (Fragment) OS=Betula platyphylla GN=MADS14 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 7  ELMDENKRLKQQ-AEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSD 66
          +LM+EN+RL+QQ AE  N  RH+G + E ++ E+GQSS SVT  C +++  PP D ESSD
Sbjct: 22 QLMEENERLRQQVAEISNGRRHVGADSENVITEEGQSSESVTNVC-NSTGAPPHDYESSD 81

Query: 67 TSLKLG 72
          TSLKLG
Sbjct: 82 TSLKLG 86

[Close]
BLAST of Lsi01G008100 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-08
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 1 

Query: 7   ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVS 66
           +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   
Sbjct: 159 QLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNA--G 218

Query: 67  NSNGPPQDLESSDTSLKLG 72
           NS G P D ESSDTSL+LG
Sbjct: 219 NSTGAPVDSESSDTSLRLG 235

[Close]
BLAST of Lsi01G008100 vs. NCBI nr
Match: gi|449451385|ref|XP_004143442.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

[Close]
BLAST of Lsi01G008100 vs. NCBI nr
Match: gi|778719004|ref|XP_011657948.1| (PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 142 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 201

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 202 SDTSLKLG 209

[Close]
BLAST of Lsi01G008100 vs. NCBI nr
Match: gi|700193500|gb|KGN48704.1| (hypothetical protein Csa_6G499000 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 112 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 171

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 172 SDTSLKLG 179

[Close]
BLAST of Lsi01G008100 vs. NCBI nr
Match: gi|659079967|ref|XP_008440541.1| (PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 142 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 201

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 202 SDTSLKLG 209

[Close]
BLAST of Lsi01G008100 vs. NCBI nr
Match: gi|659079963|ref|XP_008440538.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

The following BLAST results are available for this feature:
BLAST of Lsi01G008100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SVP_ARATH5.2e-0748.10MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1[more]
BLAST of Lsi01G008100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIR9_CUCSA9.1e-2795.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499000 PE=4 SV=1[more]
A0A0H3U1Y8_PAESU9.2e-1154.41SVP OS=Paeonia suffruticosa PE=2 SV=1[more]
E3NYP9_SOYBN3.9e-0961.54Short vegetative phase-like protein OS=Glycine max GN=SVPL PE=2 SV=1[more]
A0A0B2NY65_GLYSO3.9e-0961.54MADS-box protein SVP OS=Glycine soja GN=glysoja_000085 PE=4 SV=1[more]
F6M3V2_BETPL5.0e-0956.06MADS-box protein (Fragment) OS=Betula platyphylla GN=MADS14 PE=2 SV=1[more]
BLAST of Lsi01G008100 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22540.12.9e-0848.10 K-box region and MADS-box transcription factor family protein [more]
BLAST of Lsi01G008100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451385|ref|XP_004143442.1|1.3e-2695.59PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus][more]
gi|778719004|ref|XP_011657948.1|1.3e-2695.59PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis sativus][more]
gi|700193500|gb|KGN48704.1|1.3e-2695.59hypothetical protein Csa_6G499000 [Cucumis sativus][more]
gi|659079967|ref|XP_008440541.1|1.3e-2695.59PREDICTED: MADS-box protein SVP-like isoform X2 [Cucumis melo][more]
gi|659079963|ref|XP_008440538.1|1.3e-2695.59PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0048438 floral whorl development
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006417 regulation of translation
biological_process GO:0017148 negative regulation of translation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:2000113 negative regulation of cellular macromolecule biosynthetic process
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0051172 negative regulation of nitrogen compound metabolic process
biological_process GO:0010629 negative regulation of gene expression
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000900 translation repressor activity, nucleic acid binding
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G008100.1Lsi01G008100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 5..25
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G008100Csa6G499000Cucumber (Chinese Long) v2culsiB434
Lsi01G008100CmoCh07G005770Cucurbita moschata (Rifu)cmolsiB774
Lsi01G008100Cp4.1LG19g10020Cucurbita pepo (Zucchini)cpelsiB396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G008100Cucumber (Chinese Long) v3cuclsiB114
Lsi01G008100Cucumber (Chinese Long) v3cuclsiB183
Lsi01G008100Cucumber (Chinese Long) v3cuclsiB462
Lsi01G008100Watermelon (97103) v2lsiwmbB115
Lsi01G008100Watermelon (97103) v2lsiwmbB120
Lsi01G008100Watermelon (97103) v2lsiwmbB148
Lsi01G008100Wax gourdlsiwgoB187
Lsi01G008100Wax gourdlsiwgoB197
Lsi01G008100Bottle gourd (USVL1VR-Ls)lsilsiB075
Lsi01G008100Bottle gourd (USVL1VR-Ls)lsilsiB084
Lsi01G008100Cucumber (Gy14) v1cgylsiB125
Lsi01G008100Cucumber (Gy14) v1cgylsiB259
Lsi01G008100Cucumber (Gy14) v1cgylsiB502
Lsi01G008100Cucurbita maxima (Rimu)cmalsiB164
Lsi01G008100Cucurbita maxima (Rimu)cmalsiB597
Lsi01G008100Cucurbita maxima (Rimu)cmalsiB639
Lsi01G008100Cucurbita maxima (Rimu)cmalsiB718
Lsi01G008100Cucurbita maxima (Rimu)cmalsiB786
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB002
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB153
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB155
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB582
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB628
Lsi01G008100Cucurbita moschata (Rifu)cmolsiB707
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB079
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB164
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB326
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB664
Lsi01G008100Cucurbita pepo (Zucchini)cpelsiB666
Lsi01G008100Wild cucumber (PI 183967)cpilsiB102
Lsi01G008100Wild cucumber (PI 183967)cpilsiB165
Lsi01G008100Wild cucumber (PI 183967)cpilsiB439
Lsi01G008100Cucumber (Chinese Long) v2culsiB106
Lsi01G008100Cucumber (Chinese Long) v2culsiB166
Lsi01G008100Melon (DHL92) v3.5.1lsimeB136
Lsi01G008100Melon (DHL92) v3.5.1lsimeB143
Lsi01G008100Melon (DHL92) v3.5.1lsimeB156
Lsi01G008100Watermelon (Charleston Gray)lsiwcgB122
Lsi01G008100Watermelon (Charleston Gray)lsiwcgB127
Lsi01G008100Watermelon (Charleston Gray)lsiwcgB152
Lsi01G008100Watermelon (97103) v1lsiwmB131
Lsi01G008100Watermelon (97103) v1lsiwmB144
Lsi01G008100Watermelon (97103) v1lsiwmB166
Lsi01G008100Cucumber (Gy14) v2cgyblsiB094
Lsi01G008100Cucumber (Gy14) v2cgyblsiB151
Lsi01G008100Cucumber (Gy14) v2cgyblsiB398
Lsi01G008100Melon (DHL92) v3.6.1lsimedB150
Lsi01G008100Melon (DHL92) v3.6.1lsimedB143
Lsi01G008100Melon (DHL92) v3.6.1lsimedB163
Lsi01G008100Silver-seed gourdcarlsiB053
Lsi01G008100Silver-seed gourdcarlsiB364
Lsi01G008100Silver-seed gourdcarlsiB574
Lsi01G008100Silver-seed gourdcarlsiB855