Lsi01G007270 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G007270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 5755155 .. 5756259 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGTTGCTTCTCGTGCTTCTTTTCTGTGGTTTTAGATCCCAATACGTCCAGATCTACCATCTCTCTGCTCTGATCTGTCTTCTCGGTATGCTTTACTCTCAATTCTTTGTTGTTTTCTTCCTGTTTCTGCATCTGTTTTGTTTCCTCTGTTTGAGCTTTATCTTTTCTTGTTTTCTGCTTTTTTGCTTCATCTTGCTTGCTGTTCTTCAGTTTCCTGCTGTTTCGAGGTCGTTTCTGGGACGATTTAACTGAATTTTCTGTGGTTTTTGGTCGTTTTACTATGAATATGGAGTTTAATTTCTCGTATATCTATGGTTTTGTTCACTTTCATGCTGGATTTACCGTTGACTTTATGAACTCTGGAATTTTTTGCTTCACTGAAAGTCGACGCCTCTTTGCTTGTAAGAGGATGCGTCAGAAAGCTTCCTCTGCTCTTTTTTTTTTCTTTTGAGAAAAAAAAGTATTTGAATATGTCCTAGAAGGAGCCTTTTTGGATTTATTGTCTGCGGTCAAACCCCAGGATAGGCGGTAGAAACTACCAAATCAACACGGTAGGGGGGGGCTGACTGAGAGACAGAGAATTTCCCCGGTGGAGTTGGTGTTTTGTTATAATTTTAGTTTTTTTTTTTTTAACGGCTGTTGAATTTTTGGAGACAGATCTGACGGCGACCACCTCTCTCATCAGTTTTTTTTTTCCCCCTTTTGATGCATTTGCAGGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCAGCAGGTGTCACGCTCGGTGATGGCTCACTGGCACGCGCCAGTAATGGTTTAGCTGCTTTACTGGCTTCGGCTCTGGTCAACACCCAGCGCCTGGCTCAGGCAAGGCGCTCTCTAACCTTTGTTAATTACCTCTCATTTCTAAGTTCAATCTGCCCATTAATGAATGTTTTTTTTTCCTTCTAAAAAAATTTCTGGTCGTGATATGCTAAGAGCATGCTAGCTGTGCTTTTGATATTGGAGAAAATTATGTTTTAAATCGGTTTTTACTGGGTGATTTTGGTGTGTTTTCTGTGGAAGAAACCCGCCGGCTTCGGCCAACCGTTTGATGTTGCCGATTTCGGCTGA

mRNA sequence

ATGAACGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCAGCAGGTGTCACGCTCGGTGATGGCTCACTGGCACGCGCCAGTAATGGTTTAGCTGCTTTACTGGCTTCGGCTCTGGTCAACACCCAGCGCCTGGCTCAGGCAAGGCGCTCTCTAACCTTTAAACCCGCCGGCTTCGGCCAACCGTTTGATGTTGCCGATTTCGGCTGA

Coding sequence (CDS)

ATGAACGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCAGCAGGTGTCACGCTCGGTGATGGCTCACTGGCACGCGCCAGTAATGGTTTAGCTGCTTTACTGGCTTCGGCTCTGGTCAACACCCAGCGCCTGGCTCAGGCAAGGCGCTCTCTAACCTTTAAACCCGCCGGCTTCGGCCAACCGTTTGATGTTGCCGATTTCGGCTGA

Protein sequence

MNGTVAARMEIANASAGVTLGDGSLARASNGLAALLASALVNTQRLAQARRSLTFKPAGFGQPFDVADFG
Homology
[Close]
BLAST of Lsi01G007270 vs. TrEMBL
Match: A0A0A0KIZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501250 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-10
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 3  GTVAARMEIANASAGVTLGDGSLARASNGLAALLASALVNTQRLAQ 49
          GTVAARMEIANAS GVTLGDGSLA ASN LAALLASALVNTQRLAQ
Sbjct: 7  GTVAARMEIANASLGVTLGDGSLACASNCLAALLASALVNTQRLAQ 52

[Close]
BLAST of Lsi01G007270 vs. NCBI nr
Match: gi|700193580|gb|KGN48784.1| (hypothetical protein Csa_6G501250 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 3  GTVAARMEIANASAGVTLGDGSLARASNGLAALLASALVNTQRLAQ 49
          GTVAARMEIANAS GVTLGDGSLA ASN LAALLASALVNTQRLAQ
Sbjct: 7  GTVAARMEIANASLGVTLGDGSLACASNCLAALLASALVNTQRLAQ 52

[Close]
BLAST of Lsi01G007270 vs. NCBI nr
Match: gi|449451483|ref|XP_004143491.1| (PREDICTED: prostatic spermine-binding protein [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-07
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 9  MEIANASAGVTLGDGSLARASNGLAALLASALVNTQRLAQ 49
          MEIANAS GVTLGDGSLA ASN LAALLASALVNTQRLAQ
Sbjct: 1  MEIANASLGVTLGDGSLACASNCLAALLASALVNTQRLAQ 40

[Close]
BLAST of Lsi01G007270 vs. NCBI nr
Match: gi|659080176|ref|XP_008440651.1| (PREDICTED: prostatic spermine-binding protein [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 9  MEIANASAGVTLGDGSLARASNGLAALLASALVNTQRLAQ 49
          MEIANAS GVTLGDGSLA ASN LAALLASALVNTQ LAQ
Sbjct: 1  MEIANASLGVTLGDGSLACASNCLAALLASALVNTQLLAQ 40

The following BLAST results are available for this feature:
BLAST of Lsi01G007270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G007270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIZ3_CUCSA3.2e-1093.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501250 PE=4 SV=1[more]
BLAST of Lsi01G007270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G007270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193580|gb|KGN48784.1|4.6e-1093.48hypothetical protein Csa_6G501250 [Cucumis sativus][more]
gi|449451483|ref|XP_004143491.1|3.7e-0792.50PREDICTED: prostatic spermine-binding protein [Cucumis sativus][more]
gi|659080176|ref|XP_008440651.1|2.4e-0690.00PREDICTED: prostatic spermine-binding protein [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007270.1Lsi01G007270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G007270Cucumber (Chinese Long) v3cuclsiB462
Lsi01G007270Watermelon (97103) v2lsiwmbB115
Lsi01G007270Wax gourdlsiwgoB181
Lsi01G007270Cucumber (Gy14) v1cgylsiB125
Lsi01G007270Cucurbita maxima (Rimu)cmalsiB597
Lsi01G007270Cucurbita maxima (Rimu)cmalsiB786
Lsi01G007270Cucurbita moschata (Rifu)cmolsiB582
Lsi01G007270Cucurbita moschata (Rifu)cmolsiB774
Lsi01G007270Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G007270Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G007270Wild cucumber (PI 183967)cpilsiB439
Lsi01G007270Cucumber (Chinese Long) v2culsiB434
Lsi01G007270Melon (DHL92) v3.5.1lsimeB156
Lsi01G007270Watermelon (Charleston Gray)lsiwcgB127
Lsi01G007270Watermelon (97103) v1lsiwmB144
Lsi01G007270Cucumber (Gy14) v2cgyblsiB398
Lsi01G007270Melon (DHL92) v3.6.1lsimedB163
Lsi01G007270Silver-seed gourdcarlsiB364
Lsi01G007270Silver-seed gourdcarlsiB693