Lsi01G006910 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G006910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 5521402 .. 5522259 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAGGTTCTTCCGGCTATCAGCGATCCCACCAGTGCGCACAAGTTTAAAATTCCGGCTAGAACTTCCACTTGAACTTCATTGATTTTCATTTCATCTTTAATGAATATCATTGCTCCACTCATAACACCCGTATCTGCATAATTGAATTTTCAGTTTCAATTCATTAAACATTTCTCTCTCTGTTCTTCAGAAGGATAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTTACCATAACCAAAGATGATAGATATAATGGAGGCAACAATAGCACATGCCAGAGAATACTTATTGAGTTTGTTCTGAGTTCCAGTGGTGGCTTCTCCATCCAATGCCTTACCCACCATTGTCTTCTCCATTTTTTTGGTATCTTCTTCTCGGAGGCGTAAGGTTAGTTTCTCAGAAAGCTTATGTTCTTAACAATTATATAGAAAATTTTGGTGTTTACAGAAAGTGCTCTATTATGTTATGAATTGGAACCCATATGATCCAAAAAGATAAGGAAAGAAACTGAGGGGGAAGTCCAAAAGAATTTGGTTTTGAAGACTGAATCGGTTTGCTTTTTATTCAAGAATCGACGTGCTATTTCTGTTGAATAGATAAGAATGATAAGAACTACTCTAAGATGAAAGGAAAAAAAAATAGTGATGAATAATCTGATCGAGCTGTCTTGGTTCTAAATCTTACTCTTCGCCTGTGAAACTCAATTTTGCTGTCGTCATCTAATCAAAACTGCTTTTAGTTTCACAAATTTATGATAAAAATGGTGATGTTTGTTTGAGTTGCAGTCCTGACTTCTAGCATGTTGATTGGATACTCTCTAAAAACGGGA

mRNA sequence

ATGTCGGAGAAGGATAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTTACCATAACCAAAGATGATAGATATAATGGAGGCAACAATAGCACATGCCAGAGAATACTTATTGAGTTTGTTCTGAGTTCCAGTGGTGGCTTCTCCATCCAATGCCTTACCCACCATTGTCTTCTCCATTTTTTTGGTATCTTCTTCTCGGAGGCGTAAGGTTAGTTTCTCAGAAAGCTTATGTTCTTAACAATTATATAGAAAATTTTGGTGTTTACAGAAAGTGCTCTATTATGTTATGAATTGGAACCCATATGATCCAAAAAGATAAGGAAAGAAACTGAGGGGGAAGTCCAAAAGAATTTGGTTTTGAAGACTGAATCGGTTTGCTTTTTATTCAAGAATCGACGTGCTATTTCTGTTGAATAGATAAGAATGATAAGAACTACTCTAAGATGAAAGGAAAAAAAAATAGTGATGAATAATCTGATCGAGCTGTCTTGGTTCTAAATCTTACTCTTCGCCTGTGAAACTCAATTTTGCTGTCGTCATCTAATCAAAACTGCTTTTAGTTTCACAAATTTATGATAAAAATGGTGATGTTTGTTTGAGTTGCAGTCCTGACTTCTAGCATGTTGATTGGATACTCTCTAAAAACGGGA

Coding sequence (CDS)

ATGTCGGAGAAGGATAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTTACCATAACCAAAGATGATAGATATAATGGAGGCAACAATAGCACATGCCAGAGAATACTTATTGAGTTTGTTCTGAGTTCCAGTGGTGGCTTCTCCATCCAATGCCTTACCCACCATTGTCTTCTCCATTTTTTTGGTATCTTCTTCTCGGAGGCGTAA

Protein sequence

MSEKDRKEEEEEEEEEEEEEEELTITKDDRYNGGNNSTCQRILIEFVLSSSGGFSIQCLTHHCLLHFFGIFFSEA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G006910.1Lsi01G006910.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..29
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G006910Watermelon (97103) v2lsiwmbB115
Lsi01G006910Watermelon (97103) v2lsiwmbB149
Lsi01G006910Wax gourdlsiwgoB181
Lsi01G006910Bottle gourd (USVL1VR-Ls)lsilsiB085
Lsi01G006910Cucumber (Gy14) v1cgylsiB197
Lsi01G006910Cucumber (Gy14) v1cgylsiB375
Lsi01G006910Cucurbita maxima (Rimu)cmalsiB013
Lsi01G006910Cucurbita maxima (Rimu)cmalsiB407
Lsi01G006910Cucurbita maxima (Rimu)cmalsiB597
Lsi01G006910Cucurbita maxima (Rimu)cmalsiB786
Lsi01G006910Cucurbita moschata (Rifu)cmolsiB001
Lsi01G006910Cucurbita moschata (Rifu)cmolsiB152
Lsi01G006910Cucurbita moschata (Rifu)cmolsiB393
Lsi01G006910Cucurbita moschata (Rifu)cmolsiB582
Lsi01G006910Cucurbita moschata (Rifu)cmolsiB774
Lsi01G006910Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G006910Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G006910Cucurbita pepo (Zucchini)cpelsiB665
Lsi01G006910Wild cucumber (PI 183967)cpilsiB107
Lsi01G006910Wild cucumber (PI 183967)cpilsiB439
Lsi01G006910Cucumber (Chinese Long) v2culsiB109
Lsi01G006910Cucumber (Chinese Long) v2culsiB434
Lsi01G006910Melon (DHL92) v3.5.1lsimeB132
Lsi01G006910Melon (DHL92) v3.5.1lsimeB156
Lsi01G006910Watermelon (Charleston Gray)lsiwcgB127
Lsi01G006910Watermelon (Charleston Gray)lsiwcgB151
Lsi01G006910Watermelon (97103) v1lsiwmB132
Lsi01G006910Watermelon (97103) v1lsiwmB144
Lsi01G006910Cucumber (Gy14) v2cgyblsiB098
Lsi01G006910Cucumber (Gy14) v2cgyblsiB398
Lsi01G006910Melon (DHL92) v3.6.1lsimedB140
Lsi01G006910Melon (DHL92) v3.6.1lsimedB163
Lsi01G006910Silver-seed gourdcarlsiB364
Lsi01G006910Silver-seed gourdcarlsiB693
Lsi01G006910Silver-seed gourdcarlsiB862
Lsi01G006910Silver-seed gourdcarlsiB892
Lsi01G006910Cucumber (Chinese Long) v3cuclsiB119
Lsi01G006910Cucumber (Chinese Long) v3cuclsiB462