Lsi01G006850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G006850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription initiation factor IIB
Location	chr01 : 5500389 .. 5503245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCAACAAAAACAAAAAGTATAAATTCGATTGACCTGCAAAGTCGGATTGAGATTATCTGATCACTACCAAACATTTGCGAGCTGAATCCGAATCCCTAGCAGCACTGTAACGACGTCAATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCTCGAGCACCGGCAAATCCATCACAGAATGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGACAATTCCAGCCTCACCACCTCTTCCACCTTCGCGCTCAAGATAACCCCCTTTGTCTCGTCACCTCCGACCTACCCACCCCTCCGGTCCACCACCAGAATGATCAGGTTCTGGATCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACTTGGTCCTTGGAGCACAATCCACTCTTCTTCCGCTCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTTGAGCGTATCCTAGAGTCTACGTCCTCATCCAATTTGCCGTCGTCGTCGACGGTCGTGGTCGATAACCTTAGGGCTTATATGCAGATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCTGAGCACGCGTTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGAAGCGTTGAGGCGTTGGCCACTGCTGCCCTTGTGCAGGCTATTAGGGAGGCCCAGGAGCCCCGAACCCTTCAGGTCTCTATTTCACTTTAAATATGTGCATTTGGGGCCTTTGTTTGATTATTTGTTTTGATGTGCTCGCATTATGTTCAAGAAGATTTTTGAGAAATTCTCTATCAGGATGGATTAAGAAATCTATGTCGCTATTATCCTTTCATGTTGTTGTTTGATAGTTGGGGAGGCTATGGCTTTCAATGTCAATCTTTTTGCCATACATCTTTCTGAATTTCTTTACTAAAGTGTATAACTATCCGCAATATTTGTTCGCATTTCATGAATTACCCTGGCTTGTTCTGCATATTGTGGATCAATTGTTATCCTTCTTCTAGTTTCTTGCAAAATTATTATTTTGGAGTGTTTAGTCTTCTTGAGTTAGAATGTAAAATTTTGAGCCTCGTATATGTTGTTATCTGTACAAGCCCCTTTTTGCACGTCTGAATTTCGATTGGTGTCTTCTACCAATTGTGATTTTGAGCTATGTTTTGTGATCTTTACTTTAGTATTAATACGACATCTAAAGTGGTGTATACTGTGAGTATAACAGGAAATCTCCATTGCAGCGAATGTACCCCAAAAAGAAATAGGGAAGTACATCAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGTACCTCAATTTCATTTCTTAGACCTGGCTAAGACATATTGGTTGGTATGCATTGTCATGTTCAAAAGATGATTTATATGGACTGTATTTAGTTGATTCTTTTCAATATTATCAGAACTTCTACGGCATGAGAAAATGGAGAAGTACTGTCTCCTGATTGAAGGCATAAAATGAGAAATTTCTTTACAAATAAATATGTCTTGAGGGTTAATTACATTGGATTCTCAAAATGTTCTGCGTAAAAAGCATTATGGATTTTACAGAACCTTTATGTTCTGCCAGTGGTAGATGGTTGATGAGGAATTATAGGATCTTCATGGATAAATTTAGAGGGCTAGAGGATGTGCGGGAGAAGTACATGTGGACAAAAATGACACCCTCCCACGTAACAAAACCAAGGGAAGTTCTGAATGAGCCCTTCATTAAAATCCCCAAATCTTTCACAACTGTTCTTAGTGTCTATTGATCCCTTCAAAGACTTGGCATTTCTTATTTAACGACAGCTTCCAAAACATTGTGCTTCTGAGATTTTAGTAATTACAATGTGCGTTTGATAAATGTCAATTGGAGTACTTCTCTGTTATCTTCTTTGGCTTAGAGTGGATTAATCTCACATCTACCCCATTGTTTTCTCGTATTCTCCGAGAGTGGAAATAGTTGTTTCTTATCTAATAATTTAAATTCCCATAACGCAGTTCTCTTTTATATGACCTATAGATTTACTTTTTCTATAACCTTATGAATCACGTTTCTTTCTTTTTTAAAAAAATTAAATCAAACAAGAAAGCGATGTGATGAGTTTTCACAACTCCAAGCATGTGGTAACATGTAATGTATTATTTTCCCTCTATCATGCTTGTTAACAACTATGAATTTTAGGAACTGGCAACTCACATCGGAGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGGAAGACACAAGCAGAAATCTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAGGAGCTACTAGAAAATTGGGATGATTTGCTTCCGTCTAATTATACTCCTGCTGTTCCTCCAGAAAGAGCATTTCCCACAACTGTAATTGCTTCAGGCCGTTCTGCAGCTCCTAAAGTTGATGCATTTGAAGGAGCTTCTTTAGAGAAAGACAAGCCGGTAGAGACTAAGCCTATTATATCCACCGAGATCTCAGAAATGGGTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTTTCCCGTGGGATGTATAACCATATGACTAACAAGTCATCAACTTTTTGTCAACCACACCCTCCTAAAGGGAATTCTATCCCAAGTACTGTAGGGAAGAAGACTCAAAGTGATACCCAGGGAATGGATATTGTTAAGGAGCACTCCAACAGCCAACAGTAA

mRNA sequence

CTGCAACAAAAACAAAAAGTATAAATTCGATTGACCTGCAAAGTCGGATTGAGATTATCTGATCACTACCAAACATTTGCGAGCTGAATCCGAATCCCTAGCAGCACTGTAACGACGTCAATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCTCGAGCACCGGCAAATCCATCACAGAATGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGACAATTCCAGCCTCACCACCTCTTCCACCTTCGCGCTCAAGATAACCCCCTTTGTCTCGTCACCTCCGACCTACCCACCCCTCCGGTCCACCACCAGAATGATCAGGTTCTGGATCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACTTGGTCCTTGGAGCACAATCCACTCTTCTTCCGCTCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTTGAGCGTATCCTAGAGTCTACGTCCTCATCCAATTTGCCGTCGTCGTCGACGGTCGTGGTCGATAACCTTAGGGCTTATATGCAGATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCTGAGCACGCGTTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGAAGCGTTGAGGCGTTGGCCACTGCTGCCCTTGTGCAGGCTATTAGGGAGGCCCAGGAGCCCCGAACCCTTCAGGAAATCTCCATTGCAGCGAATGTACCCCAAAAAGAAATAGGGAAGTACATCAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCAACTCACATCGGAGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGGAAGACACAAGCAGAAATCTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAGGAGCTACTAGAAAATTGGGATGATTTGCTTCCGTCTAATTATACTCCTGCTGTTCCTCCAGAAAGAGCATTTCCCACAACTGTAATTGCTTCAGGCCGTTCTGCAGCTCCTAAAGTTGATGCATTTGAAGGAGCTTCTTTAGAGAAAGACAAGCCGGTAGAGACTAAGCCTATTATATCCACCGAGATCTCAGAAATGGGTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTTTCCCGTGGGATGTATAACCATATGACTAACAAGTCATCAACTTTTTGTCAACCACACCCTCCTAAAGGGAATTCTATCCCAAGTACTGTAGGGAAGAAGACTCAAAGTGATACCCAGGGAATGGATATTGTTAAGGAGCACTCCAACAGCCAACAGTAA

Coding sequence (CDS)

ATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCTCGAGCACCGGCAAATCCATCACAGAATGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGACAATTCCAGCCTCACCACCTCTTCCACCTTCGCGCTCAAGATAACCCCCTTTGTCTCGTCACCTCCGACCTACCCACCCCTCCGGTCCACCACCAGAATGATCAGGTTCTGGATCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACTTGGTCCTTGGAGCACAATCCACTCTTCTTCCGCTCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTTGAGCGTATCCTAGAGTCTACGTCCTCATCCAATTTGCCGTCGTCGTCGACGGTCGTGGTCGATAACCTTAGGGCTTATATGCAGATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCTGAGCACGCGTTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGAAGCGTTGAGGCGTTGGCCACTGCTGCCCTTGTGCAGGCTATTAGGGAGGCCCAGGAGCCCCGAACCCTTCAGGAAATCTCCATTGCAGCGAATGTACCCCAAAAAGAAATAGGGAAGTACATCAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCAACTCACATCGGAGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGGAAGACACAAGCAGAAATCTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAGGAGCTACTAGAAAATTGGGATGATTTGCTTCCGTCTAATTATACTCCTGCTGTTCCTCCAGAAAGAGCATTTCCCACAACTGTAATTGCTTCAGGCCGTTCTGCAGCTCCTAAAGTTGATGCATTTGAAGGAGCTTCTTTAGAGAAAGACAAGCCGGTAGAGACTAAGCCTATTATATCCACCGAGATCTCAGAAATGGGTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTTTCCCGTGGGATGTATAACCATATGACTAACAAGTCATCAACTTTTTGTCAACCACACCCTCCTAAAGGGAATTCTATCCCAAGTACTGTAGGGAAGAAGACTCAAAGTGATACCCAGGGAATGGATATTGTTAAGGAGCACTCCAACAGCCAACAGTAA

Protein sequence

MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSNLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPSTVGKKTQSDTQGMDIVKEHSNSQQ

Homology

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BLAST of Lsi01G006850 vs. Swiss-Prot
Match: PBRP1_ARATH (Plant-specific TFIIB-related protein 1 OS=Arabidopsis thaliana GN=PBRP1 PE=2 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 2.6e-167
Identity = 320/430 (74.42%), Postives = 349/430 (81.16%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCS+AQGRC T+S+G+SITEC SCGRV+EERQ Q HHLFHLRAQD PLCLVTSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSN 120
           T       D+  DPFEPTGFITAFSTWSLE +P+F RS  SFSGHLAELER LE  SS++
Sbjct: 61  TAAQPSPEDEE-DPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASSTS 120

Query: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180
             +SSTVVVDNLRAYMQIIDVAS+LGLD  ISEHAF+LFRDCCSATCLRNRSVEALATA 
Sbjct: 121 NSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATAC 180

Query: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240
           LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300
           LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGLT
Sbjct: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLT 300

Query: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPK-VDAFEGASLEKD 360
           EVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I++ RS  P+ VD  E + +EKD
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPEPSFVEKD 360

Query: 361 KPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPST 420
           KP   KPI            + KED + KF    ++   +  +       P K N++   
Sbjct: 361 KP-SAKPI--ETFDHTYQQPKGKEDKQPKFRQPWLFGTASVMNPAEMISEPAKPNAMDY- 420

Query: 421 VGKKTQSDTQ 430
             +K Q D Q
Sbjct: 421 --EKQQLDKQ 423

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BLAST of Lsi01G006850 vs. Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-23
Identity = 63/191 (32.98%), Postives = 107/191 (56.02%), Query Frame = 1


Query: 132 LRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 191
           L A+ +I  +A  + L   + + A +LFR        + RSV+ +  AAL  A R+    
Sbjct: 122 LAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLS 181

Query: 192 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELA 251
           RT +EI+   NVP+KEI +  KI+ E       + + S      RFC+ L+L    ++ A
Sbjct: 182 RTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGA 241

Query: 252 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 311
            H+ ++ ++      ++PIS++AA+IY+  QL  +++TQ +I  V+G++EVT+R  YK+L
Sbjct: 242 EHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDL 301

Query: 312 LENWDDLLPSN 323
               D L+PS+
Sbjct: 302 YAKRDQLIPSD 312

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BLAST of Lsi01G006850 vs. Swiss-Prot
Match: TF2B_METPE (Transcription initiation factor IIB OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-23
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 1


Query: 134 AYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 193
           A  ++  +AS LGL   + E A  ++RD      +R RS+E +A AAL  A R+   PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208

Query: 194 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATH 253
           L EI+  + V +KEIG+  + +   L L   +   S   ++PRFC+ L L    Q  A  
Sbjct: 209 LDEIAEVSRVSRKEIGRTYRFISRELGLK--LLPTSPIDYVPRFCSGLTLKGEVQSRAVE 268

Query: 254 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 313
           I      +   + R P  ++AAAIY++  L  +R+TQ E+ +V G+TEVT+R  YKEL E
Sbjct: 269 ILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAE 328

Query: 314 NWD 317
             D
Sbjct: 329 KLD 329

[Close]

BLAST of Lsi01G006850 vs. Swiss-Prot
Match: TF2B_METMJ (Transcription initiation factor IIB OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.9e-23
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 1


Query: 134 AYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 193
           A  ++  +AS LGL   + E A  ++RD      +R RS+E +A AAL  A R+   PRT
Sbjct: 152 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 211

Query: 194 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATH 253
           L EI+  + V +KEIG+  + +   L L   +   S   ++PRFC+ L L    Q  A  
Sbjct: 212 LDEIAEVSRVSRKEIGRTYRFISRELGLK--LLPTSPIDYVPRFCSGLNLKGEVQSRAVE 271

Query: 254 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 313
           I      +   + R P  ++AAAIY++  L  +R+TQ E+ +V G+TEVT+R  YKEL E
Sbjct: 272 ILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAE 331

Query: 314 NWD 317
             D
Sbjct: 332 KLD 332

[Close]

BLAST of Lsi01G006850 vs. Swiss-Prot
Match: TF2B_METB6 (Transcription initiation factor IIB OS=Methanoregula boonei (strain 6A8) GN=tfb PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-22
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 1


Query: 134 AYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 193
           A  ++  +AS LGL   + E A  ++RD      +R RS+E +A AAL  A R+   PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208

Query: 194 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATH 253
           L EI+  + V +KEIG+  + +   L L   +   S   ++PRFC+ L L    Q  A  
Sbjct: 209 LDEIAEVSRVSRKEIGRTYRFISRELGLK--LLPTSPIDYVPRFCSGLTLKGEVQSRAVE 268

Query: 254 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 313
           I      +   + R P  ++AAAIY++  L  +R+TQ E+ +V G+TEVT+R  YKEL E
Sbjct: 269 ILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAE 328

Query: 314 NWD 317
             D
Sbjct: 329 KLD 329

[Close]

BLAST of Lsi01G006850 vs. TrEMBL
Match: A0A0A0KM51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502590 PE=4 SV=1)

HSP 1 Score: 840.5 bits (2170), Expect = 9.4e-241
Identity = 425/443 (95.94%), Postives = 432/443 (97.52%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRC TSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP
Sbjct: 1   MKCPYCSAAQGRCVTSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSN 120
           TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELER LESTSSSN
Sbjct: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSSN 120

Query: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180
           LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA
Sbjct: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180

Query: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240
           LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300
           LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT
Sbjct: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300

Query: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDK 360
           EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPK+DAFEGASLEKDK
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKIDAFEGASLEKDK 360

Query: 361 PVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPSTV 420
           P+ETKP ISTEISEM HPSRVKEDSESKFVS GMYN +TNKSSTF QPHPPKGNS+   V
Sbjct: 361 PIETKPNISTEISEMSHPSRVKEDSESKFVSHGMYNPVTNKSSTFSQPHPPKGNSVAGFV 420

Query: 421 GKKTQ-SDTQGMDIVKEHSNSQQ 443
           GKK+Q +DTQGMDIVK+HSNSQQ
Sbjct: 421 GKKSQTADTQGMDIVKDHSNSQQ 443

[Close]

BLAST of Lsi01G006850 vs. TrEMBL
Match: A0A0D2SNJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G204500 PE=4 SV=1)

HSP 1 Score: 639.0 bits (1647), Expect = 4.2e-180
Identity = 340/436 (77.98%), Postives = 373/436 (85.55%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRCAT+STG+SITEC SCGRVVEERQFQ HHLFH+RAQD PLCLVTSD+P
Sbjct: 1   MKCPYCSAAQGRCATTSTGRSITECTSCGRVVEERQFQNHHLFHVRAQDTPLCLVTSDIP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSS- 120
            P   +Q  +  DPFEPTGFITAFSTWSLE NPLF RS  SFSGHLAELERILE +SSS 
Sbjct: 61  APASAYQIHED-DPFEPTGFITAFSTWSLEPNPLFLRSSLSFSGHLAELERILELSSSSA 120

Query: 121 -NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALAT 180
            +  SSSTVVVDNLRAYMQI+DVAS+LGLD  IS+HAF+LFRDCCSATCLRNRSVEALAT
Sbjct: 121 PSATSSSTVVVDNLRAYMQILDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 180

Query: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240
           AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240

Query: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300

Query: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE-GASLE 360
           LTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT IA+GRS+ P+VD+ +  ++ +
Sbjct: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSVPRVDSIDLSSTAD 360

Query: 361 KDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIP 420
           +DK  ++KPI   ++SE G  +R K+D+E+   S G +  M N+   F QP    G    
Sbjct: 361 RDKQQDSKPIKPNDVSEAGLQARGKDDAENNGNSSGTHAAMLNRPPHFRQPWLQFGAPNV 420

Query: 421 STVGKKTQSDTQGMDI 434
            TVG K Q+ T G DI
Sbjct: 421 RTVGDKNQT-TIGGDI 434

[Close]

BLAST of Lsi01G006850 vs. TrEMBL
Match: A0A0B0NFI7_GOSAR (Transcription initiation factor IIB OS=Gossypium arboreum GN=F383_14465 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 2.7e-179
Identity = 338/436 (77.52%), Postives = 373/436 (85.55%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRCAT++TG+SITEC SCGRVVEERQFQ HHLFH+RAQD PLCLVTSD+P
Sbjct: 1   MKCPYCSAAQGRCATTTTGRSITECTSCGRVVEERQFQNHHLFHVRAQDTPLCLVTSDIP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSS- 120
            P   +Q  +  DPFEPTGFITAF+TWSLE NPLF RS  SFSGHLAELERILE +SSS 
Sbjct: 61  APASAYQIHED-DPFEPTGFITAFATWSLEPNPLFLRSSLSFSGHLAELERILELSSSSA 120

Query: 121 -NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALAT 180
            +  SSSTVVVDNLRAYMQI+DVAS+LGLD  IS+HAF+LFRDCCSATCLRNRSVEALAT
Sbjct: 121 PSATSSSTVVVDNLRAYMQILDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 180

Query: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240
           AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240

Query: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300

Query: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE-GASLE 360
           LTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT IA+GRS+ P+VD+ +  ++ +
Sbjct: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSVPRVDSIDLSSTAD 360

Query: 361 KDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIP 420
           +DK  ++KPI   ++SE G  +R K+D+E+   S G +  M N+   F QP    G    
Sbjct: 361 RDKQQDSKPIKPNDVSEAGLQARGKDDAENNGNSSGTHAAMLNRPPHFRQPWLQFGAPGV 420

Query: 421 STVGKKTQSDTQGMDI 434
            TVG K Q+ T G DI
Sbjct: 421 RTVGDKNQT-TIGGDI 434

[Close]

BLAST of Lsi01G006850 vs. TrEMBL
Match: W9R6L4_9ROSA (Transcription initiation factor IIB OS=Morus notabilis GN=L484_014608 PE=4 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 3.5e-179
Identity = 347/450 (77.11%), Postives = 370/450 (82.22%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           M+CPYCSA QGRCAT+S G+SITEC SCGRVVEERQ  PHHLFHLRAQDNPLCLVTSDLP
Sbjct: 1   MRCPYCSAGQGRCATTSGGRSITECSSCGRVVEERQSHPHHLFHLRAQDNPLCLVTSDLP 60

Query: 61  TPPVHHQ-NDQVL-----DPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILE 120
           +   HH  ND        DPFEPTGFITAFSTWSLE  PLF RS  SFSGHLAELER LE
Sbjct: 61  SLQSHHHPNDNNNAADDDDPFEPTGFITAFSTWSLEPTPLFLRSSLSFSGHLAELERTLE 120

Query: 121 STSSSNLP--SSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRS 180
           S+SSSN    SSSTVVVDNLRAYMQIIDVAS+LGLD  IS+HAF+LFRDCCSATCLRNRS
Sbjct: 121 SSSSSNSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRS 180

Query: 181 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV 240
           VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV
Sbjct: 181 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV 240

Query: 241 HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 300
           HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE
Sbjct: 241 HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 300

Query: 301 ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE 360
           ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRS+  K D  E
Sbjct: 301 ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSGSKGDFTE 360

Query: 361 -GASLEKDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPP 420
             A+L ++K  E KP    ++ E  H  RVKE++ESK  SRG +    N SS   Q   P
Sbjct: 361 VAAALGREKQPEMKPNKPNDVLEPSHQVRVKEEAESKGNSRGAHTSALNCSSVLWQTQLP 420

Query: 421 KGNSIPSTVGKKTQSDTQGMDIVKEHSNSQ 442
            G     T  +K Q+ ++GM I +   + Q
Sbjct: 421 FGAFGVRTTSEKGQNVSRGMHIDEAQPDHQ 450

[Close]

BLAST of Lsi01G006850 vs. TrEMBL
Match: M5WDI6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004039mg PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 4.6e-179
Identity = 346/448 (77.23%), Postives = 370/448 (82.59%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGK-SITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDL 60
           M+CPYC A QGRCAT++  + SITEC SCGRVVEERQ Q HHLFHLRAQDNPLCLVTSDL
Sbjct: 1   MRCPYCLAGQGRCATTTNSRRSITECTSCGRVVEERQSQFHHLFHLRAQDNPLCLVTSDL 60

Query: 61  PTPPVHHQNDQVLD---PFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILEST 120
           PT      N+   D   PFEPTGFITAFSTWSLE NPLF RS  SFSGHLAELER LEST
Sbjct: 61  PTLHQAQPNNAAADDDDPFEPTGFITAFSTWSLEPNPLFLRSSLSFSGHLAELERTLEST 120

Query: 121 SSSNL--PSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVE 180
           SSS+   PSSSTVVVDNLRAYMQIIDVAS+LGL+Y IS+HAF+LFRDCCS TCLRNRSVE
Sbjct: 121 SSSSSSSPSSSTVVVDNLRAYMQIIDVASILGLEYDISDHAFQLFRDCCSTTCLRNRSVE 180

Query: 181 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM 240
           ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM
Sbjct: 181 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM 240

Query: 241 PRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 300
           PRFCTLLQLNKSAQ+LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC
Sbjct: 241 PRFCTLLQLNKSAQKLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 300

Query: 301 KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE-G 360
           KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRS+  KVD  E  
Sbjct: 301 KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSTSKVDLVEIP 360

Query: 361 ASLEKDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKG 420
             LE++K  E KP    E  +M  P+  KE+ E K  SRG    + N+S+TF Q   P G
Sbjct: 361 VYLEREKLPEIKPNKPNEGLDMNVPAIGKEEFELKGNSRGAQTTVLNQSTTFWQHQVPYG 420

Query: 421 NSIPSTVGKKTQSDTQGMDIVKEHSNSQ 442
            S   T GK + + T+GMDI +   N Q
Sbjct: 421 TSGLRTAGKNSHNGTEGMDIDEPQRNQQ 448

[Close]

BLAST of Lsi01G006850 vs. TAIR10
Match: AT4G36650.1 (AT4G36650.1 plant-specific TFIIB-related protein)

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-168
Identity = 320/430 (74.42%), Postives = 349/430 (81.16%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCS+AQGRC T+S+G+SITEC SCGRV+EERQ Q HHLFHLRAQD PLCLVTSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSN 120
           T       D+  DPFEPTGFITAFSTWSLE +P+F RS  SFSGHLAELER LE  SS++
Sbjct: 61  TAAQPSPEDEE-DPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASSTS 120

Query: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180
             +SSTVVVDNLRAYMQIIDVAS+LGLD  ISEHAF+LFRDCCSATCLRNRSVEALATA 
Sbjct: 121 NSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATAC 180

Query: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240
           LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300
           LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGLT
Sbjct: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLT 300

Query: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPK-VDAFEGASLEKD 360
           EVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I++ RS  P+ VD  E + +EKD
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPEPSFVEKD 360

Query: 361 KPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPST 420
           KP   KPI            + KED + KF    ++   +  +       P K N++   
Sbjct: 361 KP-SAKPI--ETFDHTYQQPKGKEDKQPKFRQPWLFGTASVMNPAEMISEPAKPNAMDY- 420

Query: 421 VGKKTQSDTQ 430
             +K Q D Q
Sbjct: 421 --EKQQLDKQ 423

[Close]

BLAST of Lsi01G006850 vs. TAIR10
Match: AT2G41630.1 (AT2G41630.1 transcription factor IIB)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-18
Identity = 68/199 (34.17%), Postives = 107/199 (53.77%), Query Frame = 1


Query: 132 LRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 191
           ++A+  I  ++  LGL   I + A +L++        R R+ +AL  A L  A R+  +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKP 165

Query: 192 RTLQEISIAAN-VPQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLLQLN 251
           RT++EI + AN   +KEIG+     +K LG  L+  Q ++  +I     M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LEPGQSVDLGTIHAGDFMRRFCSNLAMS 225

Query: 252 KSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 311
             A + A     V  ++ F  RR+PISI+A  IY+  QL D +KT  +I   TG+ E T+
Sbjct: 226 NHAVKAAQE--AVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTI 285

Query: 312 RKVYKELLENWDDLLPSNY 324
           R  YK+L  +   + PS Y
Sbjct: 286 RNSYKDLYPHLSKIAPSWY 300

[Close]

BLAST of Lsi01G006850 vs. TAIR10
Match: AT3G10330.1 (AT3G10330.1 Cyclin-like family protein)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-17
Identity = 70/201 (34.83%), Postives = 105/201 (52.24%), Query Frame = 1


Query: 134 AYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 193
           A+  I  +A  LGL   I + A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167

Query: 194 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLL----Q 253
           ++EI S+A    +KEIG+     +K LG  L+  Q +   +I     M RFC+ L    Q
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCSNLGMTNQ 227

Query: 254 LNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 313
             K+AQE      E      F  RR+PISI+AA IY+  QL D++K   +I   TG+ E 
Sbjct: 228 TVKAAQESVQKSEE------FDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEG 287

Query: 314 TLRKVYKELLENWDDLLPSNY 324
           T+R  YK+L  +   ++P+ Y
Sbjct: 288 TIRNSYKDLYPHLSKIIPAWY 300

[Close]

BLAST of Lsi01G006850 vs. TAIR10
Match: AT4G10680.1 (AT4G10680.1 transcription factor IIB (TFIIB) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-07
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 100 FSFSGHLAELERILESTSSSNLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLF 159
           F  SG  + L   L  T +  + +     V  + AY +I  +   LGL + IS  A K+ 
Sbjct: 61  FKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKI-AYAEIERMTEALGLTFGISNTACKIL 120

Query: 160 RDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
                      +S+  L  A++ +A R+   P+TL+EIS  ANV  KEI K +K+LG++
Sbjct: 121 SKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVANVDMKEINKAVKLLGDS 178

[Close]

BLAST of Lsi01G006850 vs. TAIR10
Match: AT3G29380.1 (AT3G29380.1 Cyclin-like family protein)

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-07
Identity = 55/201 (27.36%), Postives = 97/201 (48.26%), Query Frame = 1


Query: 133 RAYMQIIDVASLLGLDYYISEHAFKL---FRDCCSATCLRNRSVEALATAALVQAIREAQ 192
           +A+ +I  +   L LD  I+  A ++   +    +    R + + A+  A++  A RE Q
Sbjct: 114 QAFEEIQRMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQ 173

Query: 193 EPRTLQEISIAAN-VPQKEIGKYIKILGEALQLSQPINSNSISV-----HMPRFCTLLQL 252
             RTL+EI+  AN V +K+I K   ++   L+  Q   S S ++      + RFC+ L +
Sbjct: 174 LSRTLKEIAEVANGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDI 233

Query: 253 NKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQL-EDKRKTQAEICKVTGLTEV 312
             S +E+      V   + F  RRNP S+ AA I++   + +  RK   EI  V  + E 
Sbjct: 234 --SQREIMAIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVEN 293

Query: 313 TLRKVYKELLENWDDLLPSNY 324
           T++   K++      ++P+ Y
Sbjct: 294 TIKNSVKDMYPYALKIIPNWY 312

[Close]

BLAST of Lsi01G006850 vs. NCBI nr
Match: gi|449451663|ref|XP_004143581.1| (PREDICTED: uncharacterized protein LOC101217129 [Cucumis sativus])

HSP 1 Score: 840.5 bits (2170), Expect = 1.4e-240
Identity = 425/443 (95.94%), Postives = 432/443 (97.52%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRC TSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP
Sbjct: 1   MKCPYCSAAQGRCVTSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSN 120
           TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELER LESTSSSN
Sbjct: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSSN 120

Query: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180
           LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA
Sbjct: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180

Query: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240
           LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300
           LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT
Sbjct: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300

Query: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDK 360
           EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPK+DAFEGASLEKDK
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKIDAFEGASLEKDK 360

Query: 361 PVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPSTV 420
           P+ETKP ISTEISEM HPSRVKEDSESKFVS GMYN +TNKSSTF QPHPPKGNS+   V
Sbjct: 361 PIETKPNISTEISEMSHPSRVKEDSESKFVSHGMYNPVTNKSSTFSQPHPPKGNSVAGFV 420

Query: 421 GKKTQ-SDTQGMDIVKEHSNSQQ 443
           GKK+Q +DTQGMDIVK+HSNSQQ
Sbjct: 421 GKKSQTADTQGMDIVKDHSNSQQ 443

[Close]

BLAST of Lsi01G006850 vs. NCBI nr
Match: gi|659080265|ref|XP_008440699.1| (PREDICTED: uncharacterized protein LOC103485039 [Cucumis melo])

HSP 1 Score: 840.1 bits (2169), Expect = 1.8e-240
Identity = 425/443 (95.94%), Postives = 432/443 (97.52%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRC TSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP
Sbjct: 1   MKCPYCSAAQGRCVTSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSN 120
           TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELER LESTSSSN
Sbjct: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSSN 120

Query: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180
           LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA
Sbjct: 121 LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAA 180

Query: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240
           LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300
           LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT
Sbjct: 241 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300

Query: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDK 360
           EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPK+DAFEGASLEKDK
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKIDAFEGASLEKDK 360

Query: 361 PVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPSTV 420
           P+ETKP I TEI+EM HPSRVKEDSESKFVSRGMYN +TNKSSTF QPHPPKGNS+ S V
Sbjct: 361 PIETKPNICTEITEMSHPSRVKEDSESKFVSRGMYNPVTNKSSTFSQPHPPKGNSVASFV 420

Query: 421 GKKTQ-SDTQGMDIVKEHSNSQQ 443
           GKK+Q +D QGMDIVKEHSNSQQ
Sbjct: 421 GKKSQTADAQGMDIVKEHSNSQQ 443

[Close]

BLAST of Lsi01G006850 vs. NCBI nr
Match: gi|1009145196|ref|XP_015890200.1| (PREDICTED: uncharacterized protein LOC107424838 [Ziziphus jujuba])

HSP 1 Score: 669.5 bits (1726), Expect = 4.1e-189
Identity = 358/450 (79.56%), Postives = 387/450 (86.00%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           M+CPYCSA QGRCAT+S G+SITEC SCGRVVEERQ QPHHLFHLRAQDNPLCLVTSDLP
Sbjct: 1   MRCPYCSAGQGRCATTSGGRSITECDSCGRVVEERQSQPHHLFHLRAQDNPLCLVTSDLP 60

Query: 61  TPPVHHQ--NDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSS 120
           T   H+Q  +D   DPFEPTGFITAFSTWSLE +PLF RSC SFSGHLAELER LES+SS
Sbjct: 61  TLHQHYQTHDDDDEDPFEPTGFITAFSTWSLEPSPLFLRSCLSFSGHLAELERTLESSSS 120

Query: 121 SN----LPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVE 180
           S+      SSSTVVVDNLRAYMQIIDVAS+LGLDY IS+HAF+LFRDCCSATCLRNRSVE
Sbjct: 121 SSSSSSTSSSSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVE 180

Query: 181 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM 240
           ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM
Sbjct: 181 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHM 240

Query: 241 PRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 300
           PRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC
Sbjct: 241 PRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 300

Query: 301 KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEG- 360
           KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGR++A K D  E  
Sbjct: 301 KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRTSATKADLAEAT 360

Query: 361 ASLEKDKPVETKPIIS-TEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPK 420
           ASL+++K  E KP     E+++M H +RVKED ESK  +RG +N + N+S+   Q   P 
Sbjct: 361 ASLDREKQPEAKPNNKPNEVTDMIHQARVKEDVESKGNARGAHNPLLNRSTIIWQTQHPF 420

Query: 421 GNSIPSTVGKKTQSDTQGMDIVKEHSNSQQ 443
           G S   TVG K+Q+  QGM+I +  SN QQ
Sbjct: 421 GTSGLRTVGDKSQNIVQGMEIDEAQSNRQQ 450

[Close]

BLAST of Lsi01G006850 vs. NCBI nr
Match: gi|823192139|ref|XP_012491666.1| (PREDICTED: uncharacterized protein LOC105803814 isoform X1 [Gossypium raimondii])

HSP 1 Score: 639.0 bits (1647), Expect = 6.0e-180
Identity = 340/436 (77.98%), Postives = 373/436 (85.55%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRCAT+STG+SITEC SCGRVVEERQFQ HHLFH+RAQD PLCLVTSD+P
Sbjct: 1   MKCPYCSAAQGRCATTSTGRSITECTSCGRVVEERQFQNHHLFHVRAQDTPLCLVTSDIP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSS- 120
            P   +Q  +  DPFEPTGFITAFSTWSLE NPLF RS  SFSGHLAELERILE +SSS 
Sbjct: 61  APASAYQIHED-DPFEPTGFITAFSTWSLEPNPLFLRSSLSFSGHLAELERILELSSSSA 120

Query: 121 -NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALAT 180
            +  SSSTVVVDNLRAYMQI+DVAS+LGLD  IS+HAF+LFRDCCSATCLRNRSVEALAT
Sbjct: 121 PSATSSSTVVVDNLRAYMQILDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 180

Query: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240
           AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240

Query: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300

Query: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE-GASLE 360
           LTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT IA+GRS+ P+VD+ +  ++ +
Sbjct: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSVPRVDSIDLSSTAD 360

Query: 361 KDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIP 420
           +DK  ++KPI   ++SE G  +R K+D+E+   S G +  M N+   F QP    G    
Sbjct: 361 RDKQQDSKPIKPNDVSEAGLQARGKDDAENNGNSSGTHAAMLNRPPHFRQPWLQFGAPNV 420

Query: 421 STVGKKTQSDTQGMDI 434
            TVG K Q+ T G DI
Sbjct: 421 RTVGDKNQT-TIGGDI 434

[Close]

BLAST of Lsi01G006850 vs. NCBI nr
Match: gi|728831151|gb|KHG10594.1| (Transcription initiation factor IIB [Gossypium arboreum])

HSP 1 Score: 636.3 bits (1640), Expect = 3.9e-179
Identity = 338/436 (77.52%), Postives = 373/436 (85.55%), Query Frame = 1


Query: 1   MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
           MKCPYCSAAQGRCAT++TG+SITEC SCGRVVEERQFQ HHLFH+RAQD PLCLVTSD+P
Sbjct: 1   MKCPYCSAAQGRCATTTTGRSITECTSCGRVVEERQFQNHHLFHVRAQDTPLCLVTSDIP 60

Query: 61  TPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSS- 120
            P   +Q  +  DPFEPTGFITAF+TWSLE NPLF RS  SFSGHLAELERILE +SSS 
Sbjct: 61  APASAYQIHED-DPFEPTGFITAFATWSLEPNPLFLRSSLSFSGHLAELERILELSSSSA 120

Query: 121 -NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALAT 180
            +  SSSTVVVDNLRAYMQI+DVAS+LGLD  IS+HAF+LFRDCCSATCLRNRSVEALAT
Sbjct: 121 PSATSSSTVVVDNLRAYMQILDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 180

Query: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240
           AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 181 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 240

Query: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 241 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 300

Query: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFE-GASLE 360
           LTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT IA+GRS+ P+VD+ +  ++ +
Sbjct: 301 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSVPRVDSIDLSSTAD 360

Query: 361 KDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIP 420
           +DK  ++KPI   ++SE G  +R K+D+E+   S G +  M N+   F QP    G    
Sbjct: 361 RDKQQDSKPIKPNDVSEAGLQARGKDDAENNGNSSGTHAAMLNRPPHFRQPWLQFGAPGV 420

Query: 421 STVGKKTQSDTQGMDI 434
            TVG K Q+ T G DI
Sbjct: 421 RTVGDKNQT-TIGGDI 434

The following BLAST results are available for this feature:

BLAST of Lsi01G006850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PBRP1_ARATH	2.6e-167	74.42	Plant-specific TFIIB-related protein 1 OS=Arabidopsis thaliana GN=PBRP1 PE=2 SV=...	[more]
TF2B_DICDI	2.7e-23	32.98	Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV...	[more]
TF2B_METPE	4.6e-23	37.16	Transcription initiation factor IIB OS=Methanosphaerula palustris (strain ATCC B...	[more]
TF2B_METMJ	7.9e-23	37.16	Transcription initiation factor IIB OS=Methanoculleus marisnigri (strain ATCC 35...	[more]
TF2B_METB6	1.0e-22	37.16	Transcription initiation factor IIB OS=Methanoregula boonei (strain 6A8) GN=tfb ...	[more]

BLAST of Lsi01G006850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM51_CUCSA	9.4e-241	95.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502590 PE=4 SV=1	[more]
A0A0D2SNJ8_GOSRA	4.2e-180	77.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G204500 PE=4 SV=1	[more]
A0A0B0NFI7_GOSAR	2.7e-179	77.52	Transcription initiation factor IIB OS=Gossypium arboreum GN=F383_14465 PE=4 SV=...	[more]
W9R6L4_9ROSA	3.5e-179	77.11	Transcription initiation factor IIB OS=Morus notabilis GN=L484_014608 PE=4 SV=1	[more]
M5WDI6_PRUPE	4.6e-179	77.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004039mg PE=4 SV=1	[more]

BLAST of Lsi01G006850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36650.1	1.5e-168	74.42	plant-specific TFIIB-related protein	[more]
AT2G41630.1	2.1e-18	34.17	transcription factor IIB	[more]
AT3G10330.1	2.4e-17	34.83	Cyclin-like family protein	[more]
AT4G10680.1	3.8e-07	31.93	transcription factor IIB (TFIIB) family protein	[more]
AT3G29380.1	4.9e-07	27.36	Cyclin-like family protein	[more]

BLAST of Lsi01G006850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451663\|ref\|XP_004143581.1\|	1.4e-240	95.94	PREDICTED: uncharacterized protein LOC101217129 [Cucumis sativus]	[more]
gi\|659080265\|ref\|XP_008440699.1\|	1.8e-240	95.94	PREDICTED: uncharacterized protein LOC103485039 [Cucumis melo]	[more]
gi\|1009145196\|ref\|XP_015890200.1\|	4.1e-189	79.56	PREDICTED: uncharacterized protein LOC107424838 [Ziziphus jujuba]	[more]
gi\|823192139\|ref\|XP_012491666.1\|	6.0e-180	77.98	PREDICTED: uncharacterized protein LOC105803814 isoform X1 [Gossypium raimondii]	[more]
gi\|728831151\|gb\|KHG10594.1\|	3.9e-179	77.52	Transcription initiation factor IIB [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0017025	TBP-class protein binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR013150	TFIIB_cyclin
IPR000812	TFIIB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0010440	stomatal lineage progression
biological_process	GO:0070897	DNA-templated transcriptional preinitiation complex assembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009527	plastid outer membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0000182	rDNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G006850.1	Lsi01G006850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000812	Transcription factor TFIIB	PRINTS	PR00685	TIFACTORIIB	coord: 18..38 score: 1.3E-25coord: 178..197 score: 1.3E-25coord: 267..283 score: 1.3E-25coord: 299..313 score: 1.3E-25coord: 233..251 score: 1.3E-25coord: 204..219 score: 1.3
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 1..349 score: 6.8E
IPR013150	Transcription factor TFIIB, cyclin-like domain	PFAM	PF00382	TFIIB	coord: 234..304 score: 2.8E-12coord: 140..208 score: 1.
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 134..227 score: 4.5E-19coord: 234..329 score: 1.6
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 232..313 score: 1.7E-15coord: 136..217 score: 2.
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 133..223 score: 4.88E-15coord: 230..328 score: 9.3
None	No IPR available	PANTHER	PTHR11618:SF26	SUBFAMILY NOT NAMED	coord: 1..349 score: 6.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G006850	Csa6G502590	Cucumber (Chinese Long) v2	culsiB434
Lsi01G006850	CSPI06G30900	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G006850	Cucsa.127360	Cucumber (Gy14) v1	cgylsiB197
Lsi01G006850	CmaCh03G007600	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G006850	CmoCh03G007870	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G006850	Cla014202	Watermelon (97103) v1	lsiwmB144
Lsi01G006850	MELO3C007819	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G006850	ClCG01G019450	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G006850	MELO3C007819.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G006850	Cla97C01G018850	Watermelon (97103) v2	lsiwmbB115
Lsi01G006850	Bhi03G000995	Wax gourd	lsiwgoB181
Lsi01G006850	Cp4.1LG10g00900	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G006850	CsGy6G030420	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G006850	Carg00654	Silver-seed gourd	carlsiB364
Lsi01G006850	CsaV3_6G046160	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G006850	Silver-seed gourd	carlsiB693
Lsi01G006850	Silver-seed gourd	carlsiB862
Lsi01G006850	Silver-seed gourd	carlsiB892
Lsi01G006850	Cucumber (Chinese Long) v3	cuclsiB119
Lsi01G006850	Cucumber (Chinese Long) v3	cuclsiB187
Lsi01G006850	Watermelon (97103) v2	lsiwmbB144
Lsi01G006850	Watermelon (97103) v2	lsiwmbB149
Lsi01G006850	Bottle gourd (USVL1VR-Ls)	lsilsiB085
Lsi01G006850	Cucumber (Gy14) v1	cgylsiB375
Lsi01G006850	Cucumber (Gy14) v1	cgylsiB547
Lsi01G006850	Cucurbita maxima (Rimu)	cmalsiB013
Lsi01G006850	Cucurbita maxima (Rimu)	cmalsiB407
Lsi01G006850	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G006850	Cucurbita moschata (Rifu)	cmolsiB001
Lsi01G006850	Cucurbita moschata (Rifu)	cmolsiB152
Lsi01G006850	Cucurbita moschata (Rifu)	cmolsiB393
Lsi01G006850	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G006850	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G006850	Cucurbita pepo (Zucchini)	cpelsiB439
Lsi01G006850	Cucurbita pepo (Zucchini)	cpelsiB665
Lsi01G006850	Wild cucumber (PI 183967)	cpilsiB107
Lsi01G006850	Wild cucumber (PI 183967)	cpilsiB170
Lsi01G006850	Cucumber (Chinese Long) v2	culsiB109
Lsi01G006850	Cucumber (Chinese Long) v2	culsiB171
Lsi01G006850	Melon (DHL92) v3.5.1	lsimeB132
Lsi01G006850	Melon (DHL92) v3.5.1	lsimeB142
Lsi01G006850	Watermelon (Charleston Gray)	lsiwcgB146
Lsi01G006850	Watermelon (Charleston Gray)	lsiwcgB151
Lsi01G006850	Watermelon (97103) v1	lsiwmB132
Lsi01G006850	Watermelon (97103) v1	lsiwmB140
Lsi01G006850	Cucumber (Gy14) v2	cgyblsiB098
Lsi01G006850	Cucumber (Gy14) v2	cgyblsiB155
Lsi01G006850	Melon (DHL92) v3.6.1	lsimedB140
Lsi01G006850	Melon (DHL92) v3.6.1	lsimedB148