Lsi01G006550 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G006550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPre-mRNA-splicing factor prp46, putative
Locationchr01 : 5261566 .. 5261982 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAACATCCTAAACAGCACAGTTTCTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGTGCATAACATGCTTTCTCAGCAGAAGAGTATAATCAATGCGATGGATGTCAATGAGAAGGGTGTTATGGTGACTGGTGGTGACAATGGTAGTTTATGGTTTTGGGATTGGAAGACTGGCCATAACTTTCAGCAATCACAAACAATTGTTCAGCCTGGCTCGTTGGATAGTGAAGCTGCTATTTATGCTCTGTCTTACGACATCACTGGTTCGAGGCTTGTTACTTGTGAAACCGACAAAACTATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCTCAAACTCATCCCCTCAACATCAAGCCATCCAAAGATATCAGAAGATTTTAG

mRNA sequence

ATGGCACAACATCCTAAACAGCACAGTTTCTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGTGCATAACATGCTTTCTCAGCAGAAGAGTATAATCAATGCGATGGATGTCAATGAGAAGGGTGTTATGGTGACTGGTGGTGACAATGGTAGTTTATGGTTTTGGGATTGGAAGACTGGCCATAACTTTCAGCAATCACAAACAATTGTTCAGCCTGGCTCGTTGGATAGTGAAGCTGCTATTTATGCTCTGTCTTACGACATCACTGGTTCGAGGCTTGTTACTTGTGAAACCGACAAAACTATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCTCAAACTCATCCCCTCAACATCAAGCCATCCAAAGATATCAGAAGATTTTAG

Coding sequence (CDS)

ATGGCACAACATCCTAAACAGCACAGTTTCTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGTGCATAACATGCTTTCTCAGCAGAAGAGTATAATCAATGCGATGGATGTCAATGAGAAGGGTGTTATGGTGACTGGTGGTGACAATGGTAGTTTATGGTTTTGGGATTGGAAGACTGGCCATAACTTTCAGCAATCACAAACAATTGTTCAGCCTGGCTCGTTGGATAGTGAAGCTGCTATTTATGCTCTGTCTTACGACATCACTGGTTCGAGGCTTGTTACTTGTGAAACCGACAAAACTATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCTCAAACTCATCCCCTCAACATCAAGCCATCCAAAGATATCAGAAGATTTTAG

Protein sequence

MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
Homology
[Close]
BLAST of Lsi01G006550 vs. Swiss-Prot
Match: PRL1_ARATH (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-61
Identity = 110/138 (79.71%), Postives = 124/138 (89.86%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           M  HPK+++F ASASADN KKF+LP+GEF HNMLSQQK+IINAM VNE GVMVTGGDNGS
Sbjct: 350 MTLHPKENAF-ASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGS 409

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GH+FQQS+TIVQPGSL+SEA IYA  YD TGSRLVTCE DKTIKMWKEDENA
Sbjct: 410 IWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENA 469

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THP+N KP K+IRRF
Sbjct: 470 TPETHPINFKPPKEIRRF 486

[Close]
BLAST of Lsi01G006550 vs. Swiss-Prot
Match: PRL2_ARATH (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK++ F  SASADNIKKF+LP+GEF HNMLS Q+ IINA+ VNE GVMVTGGD G 
Sbjct: 343 MALHPKENDF-VSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGG 402

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQ+++TIVQPGSL+SEA IYA  YD TGSRLVTCE DKTIKMWKEDE+A
Sbjct: 403 LWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDA 462

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP K+IRRF
Sbjct: 463 TPETHPLNFKPPKEIRRF 479

[Close]
BLAST of Lsi01G006550 vs. Swiss-Prot
Match: PRP46_SCHPO (Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-34
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           ++ HP + +F AS S+DNIK +  P G F+ N      +I+N + +N   VM +G DNGS
Sbjct: 337 LSLHPDEFTF-ASGSSDNIKHWKFPEGAFMGNF-EGHNAIVNTLSINSDNVMFSGADNGS 396

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           + FWDWK+GH +Q+ Q++VQPGSLDSEA I+A S+D TG RL+TCE DK++K++K+ +NA
Sbjct: 397 MCFWDWKSGHKYQELQSVVQPGSLDSEAGIFASSFDKTGLRLITCEADKSVKIYKQVDNA 456

Query: 121 TPQTHP-LNIKPSKDIRRF 139
           TP+THP L   PS   RR+
Sbjct: 457 TPETHPNLPWTPSNLRRRY 473

[Close]
BLAST of Lsi01G006550 vs. Swiss-Prot
Match: PLRG1_BOVIN (Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-34
Identity = 69/128 (53.91%), Postives = 94/128 (73.44%), Query Frame = 1 

Query: 4   HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWF 63
           HP+ H  FAS S DNIK++  P G F+ N LS   +IIN + VN  GV+V+G DNG++  
Sbjct: 380 HPR-HYTFASGSPDNIKQWKFPDGSFIQN-LSGHNAIINTLTVNSDGVLVSGADNGTMHL 439

Query: 64  WDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENATPQ 123
           WDW+TG+NFQ+    VQPGSLDSE+ I+A ++D + SRL+T E DKTIK++KED+ AT +
Sbjct: 440 WDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYKEDDTATEE 499

Query: 124 THPLNIKP 132
           THP++ KP
Sbjct: 500 THPVSWKP 505

[Close]
BLAST of Lsi01G006550 vs. Swiss-Prot
Match: PLRG1_HUMAN (Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-34
Identity = 68/128 (53.12%), Postives = 94/128 (73.44%), Query Frame = 1 

Query: 4   HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWF 63
           HP+ H  FAS S DNIK++  P G F+ N LS   +IIN + VN  GV+V+G DNG++  
Sbjct: 381 HPR-HYTFASGSPDNIKQWKFPDGSFIQN-LSGHNAIINTLTVNSDGVLVSGADNGTMHL 440

Query: 64  WDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENATPQ 123
           WDW+TG+NFQ+    VQPGSLDSE+ I+A ++D + SRL+T E DKTIK+++ED+ AT +
Sbjct: 441 WDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTATEE 500

Query: 124 THPLNIKP 132
           THP++ KP
Sbjct: 501 THPVSWKP 506

[Close]
BLAST of Lsi01G006550 vs. TrEMBL
Match: A0A0A0KD37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319790 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-67
Identity = 124/138 (89.86%), Postives = 130/138 (94.20%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+HSF ASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVM TGGDNGS
Sbjct: 340 MALHPKEHSF-ASASADNIKKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMATGGDNGS 399

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGSRL+TCE DKTIKMWKEDENA
Sbjct: 400 LWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKTIKMWKEDENA 459

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 460 TPETHPLNFKPPKDIRRF 476

[Close]
BLAST of Lsi01G006550 vs. TrEMBL
Match: D7SYE1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02310 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-64
Identity = 118/138 (85.51%), Postives = 129/138 (93.48%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+H+F ASASADNIKKFNLP+GEF+HNMLSQQK+IINAM VNE+GVM T GDNGS
Sbjct: 348 MALHPKEHTF-ASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMATAGDNGS 407

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GHNFQQ+QTIVQPGSLDSEA IYALSYD+TGSRLVTCE DKTIKMWKEDENA
Sbjct: 408 MWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDLTGSRLVTCEADKTIKMWKEDENA 467

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 468 TPETHPLNFKPPKDIRRF 484

[Close]
BLAST of Lsi01G006550 vs. TrEMBL
Match: A0A151T5Z5_CAJCA (PP1/PP2A phosphatases pleiotropic regulator PRL1 OS=Cajanus cajan GN=KK1_016977 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.8e-64
Identity = 117/138 (84.78%), Postives = 129/138 (93.48%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+ SF ASASADNIKKFNLP+GEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGS
Sbjct: 344 MAPHPKEQSF-ASASADNIKKFNLPKGEFVHNMLSQQKTIINAMAVNEEGVMVTGGDNGS 403

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GHNFQQSQTIVQPGSLDSEA IYAL+YD+TGSRL++CE DKTIKMWKEDE A
Sbjct: 404 MWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALTYDVTGSRLISCEADKTIKMWKEDETA 463

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN +P KDIRRF
Sbjct: 464 TPETHPLNFRPPKDIRRF 480

[Close]
BLAST of Lsi01G006550 vs. TrEMBL
Match: M5XXX5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005183mg PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.8e-64
Identity = 117/138 (84.78%), Postives = 130/138 (94.20%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MAQHPK++ F ASASADNIKKFNLP+GEF+HNMLSQQK+IINAM VNE GVM TGGDNGS
Sbjct: 337 MAQHPKENCF-ASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEDGVMATGGDNGS 396

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GHNFQQSQTIVQPGSLDSEAAIYALSYD+TG+RLV+CE DKTIKMWK+DENA
Sbjct: 397 VWFWDWKSGHNFQQSQTIVQPGSLDSEAAIYALSYDVTGTRLVSCEADKTIKMWKQDENA 456

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN +P KDIRRF
Sbjct: 457 TPETHPLNFRPPKDIRRF 473

[Close]
BLAST of Lsi01G006550 vs. TrEMBL
Match: A0A0B2Q3Q4_GLYSO (Protein pleiotropic regulatory locus 1 OS=Glycine soja GN=glysoja_024708 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.6e-64
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MAQHPK+ +F ASASADNIKKFNLP+GEF+HNMLSQQK+IINAM VNE+GVMVTGGDNGS
Sbjct: 340 MAQHPKEQAF-ASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMVTGGDNGS 399

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GHNFQQSQTIVQPGSLDSEA IYA +YD+TGSRL+TCE DKTIKMWKEDE+A
Sbjct: 400 MWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYACTYDLTGSRLITCEADKTIKMWKEDESA 459

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN +P KDIRRF
Sbjct: 460 TPETHPLNFRPPKDIRRF 476

[Close]
BLAST of Lsi01G006550 vs. TAIR10
Match: AT4G15900.1 (AT4G15900.1 pleiotropic regulatory locus 1)

HSP 1 Score: 235.7 bits (600), Expect = 1.7e-62
Identity = 110/138 (79.71%), Postives = 124/138 (89.86%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           M  HPK+++F ASASADN KKF+LP+GEF HNMLSQQK+IINAM VNE GVMVTGGDNGS
Sbjct: 350 MTLHPKENAF-ASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGS 409

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GH+FQQS+TIVQPGSL+SEA IYA  YD TGSRLVTCE DKTIKMWKEDENA
Sbjct: 410 IWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENA 469

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THP+N KP K+IRRF
Sbjct: 470 TPETHPINFKPPKEIRRF 486

[Close]
BLAST of Lsi01G006550 vs. TAIR10
Match: AT3G16650.1 (AT3G16650.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 1.7e-59
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK++ F  SASADNIKKF+LP+GEF HNMLS Q+ IINA+ VNE GVMVTGGD G 
Sbjct: 343 MALHPKENDF-VSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGG 402

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQ+++TIVQPGSL+SEA IYA  YD TGSRLVTCE DKTIKMWKEDE+A
Sbjct: 403 LWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDA 462

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP K+IRRF
Sbjct: 463 TPETHPLNFKPPKEIRRF 479

[Close]
BLAST of Lsi01G006550 vs. NCBI nr
Match: gi|659117096|ref|XP_008458420.1| (PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67
Identity = 126/138 (91.30%), Postives = 131/138 (94.93%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+HSF ASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGS
Sbjct: 347 MALHPKEHSF-ASASADNIKKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMVTGGDNGS 406

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGSRLVTCE DKTIKMWKEDENA
Sbjct: 407 LWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKTIKMWKEDENA 466

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 467 TPETHPLNFKPPKDIRRF 483

[Close]
BLAST of Lsi01G006550 vs. NCBI nr
Match: gi|449465573|ref|XP_004150502.1| (PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 124/138 (89.86%), Postives = 130/138 (94.20%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+HSF ASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVM TGGDNGS
Sbjct: 340 MALHPKEHSF-ASASADNIKKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMATGGDNGS 399

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGSRL+TCE DKTIKMWKEDENA
Sbjct: 400 LWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKTIKMWKEDENA 459

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 460 TPETHPLNFKPPKDIRRF 476

[Close]
BLAST of Lsi01G006550 vs. NCBI nr
Match: gi|359477184|ref|XP_002262991.2| (PREDICTED: protein pleiotropic regulatory locus 1 [Vitis vinifera])

HSP 1 Score: 253.1 bits (645), Expect = 2.9e-64
Identity = 118/138 (85.51%), Postives = 129/138 (93.48%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+H+F ASASADNIKKFNLP+GEF+HNMLSQQK+IINAM VNE+GVM T GDNGS
Sbjct: 348 MALHPKEHTF-ASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMATAGDNGS 407

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           +WFWDWK+GHNFQQ+QTIVQPGSLDSEA IYALSYD+TGSRLVTCE DKTIKMWKEDENA
Sbjct: 408 MWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDLTGSRLVTCEADKTIKMWKEDENA 467

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 468 TPETHPLNFKPPKDIRRF 484

[Close]
BLAST of Lsi01G006550 vs. NCBI nr
Match: gi|470121601|ref|XP_004296851.1| (PREDICTED: protein pleiotropic regulatory locus 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-64
Identity = 116/138 (84.06%), Postives = 131/138 (94.93%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           +AQHPK+H+F ASASADNIKKF+LPRGEF+HNMLSQQK+IINAM +NE+GVM TGGDNGS
Sbjct: 345 IAQHPKEHAF-ASASADNIKKFSLPRGEFLHNMLSQQKTIINAMAINEEGVMATGGDNGS 404

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHN+QQSQTIVQPGSLDSEA IYALSYD+TG+RLV+CE DKTIKMWK+DENA
Sbjct: 405 LWFWDWKSGHNYQQSQTIVQPGSLDSEAGIYALSYDVTGTRLVSCEADKTIKMWKQDENA 464

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 465 TPETHPLNFKPPKDIRRF 481

[Close]
BLAST of Lsi01G006550 vs. NCBI nr
Match: gi|1009142236|ref|XP_015888616.1| (PREDICTED: protein pleiotropic regulatory locus 1-like [Ziziphus jujuba])

HSP 1 Score: 251.5 bits (641), Expect = 8.4e-64
Identity = 119/138 (86.23%), Postives = 127/138 (92.03%), Query Frame = 1 

Query: 1   MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGS 60
           MA HPK+H F ASASADNIKKFNLPRGEF+HNMLSQQK+IINAM VNE GVM TGGDNGS
Sbjct: 319 MALHPKEHCF-ASASADNIKKFNLPRGEFLHNMLSQQKTIINAMAVNEDGVMATGGDNGS 378

Query: 61  LWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKTIKMWKEDENA 120
           LWFWDWK+GHNFQQ+QTIVQPGSLDSEA IYA+SYDITGSRLVTCE DKTIKMWKED+ A
Sbjct: 379 LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAISYDITGSRLVTCEADKTIKMWKEDDAA 438

Query: 121 TPQTHPLNIKPSKDIRRF 139
           TP+THPLN KP KDIRRF
Sbjct: 439 TPETHPLNFKPPKDIRRF 455

The following BLAST results are available for this feature:
BLAST of Lsi01G006550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRL1_ARATH3.0e-6179.71Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1[more]
PRL2_ARATH3.1e-5876.81Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2[more]
PRP46_SCHPO1.4e-3450.36Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
PLRG1_BOVIN3.1e-3453.91Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1[more]
PLRG1_HUMAN6.9e-3453.13Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1[more]
BLAST of Lsi01G006550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD37_CUCSA7.4e-6789.86Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319790 PE=4 SV=1[more]
D7SYE1_VITVI2.0e-6485.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02310 PE=4 SV=... [more]
A0A151T5Z5_CAJCA5.8e-6484.78PP1/PP2A phosphatases pleiotropic regulator PRL1 OS=Cajanus cajan GN=KK1_016977 ... [more]
M5XXX5_PRUPE5.8e-6484.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005183mg PE=4 SV=1[more]
A0A0B2Q3Q4_GLYSO7.6e-6484.06Protein pleiotropic regulatory locus 1 OS=Glycine soja GN=glysoja_024708 PE=4 SV... [more]
BLAST of Lsi01G006550 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15900.11.7e-6279.71 pleiotropic regulatory locus 1[more]
AT3G16650.11.7e-5976.81 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of Lsi01G006550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117096|ref|XP_008458420.1|2.8e-6791.30PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo][more]
gi|449465573|ref|XP_004150502.1|1.1e-6689.86PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis sativus][more]
gi|359477184|ref|XP_002262991.2|2.9e-6485.51PREDICTED: protein pleiotropic regulatory locus 1 [Vitis vinifera][more]
gi|470121601|ref|XP_004296851.1|3.8e-6484.06PREDICTED: protein pleiotropic regulatory locus 1 [Fragaria vesca subsp. vesca][more]
gi|1009142236|ref|XP_015888616.1|8.4e-6486.23PREDICTED: protein pleiotropic regulatory locus 1-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005662 DNA replication factor A complex
cellular_component GO:0016459 myosin complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000974 Prp19 complex
molecular_function GO:0016905 myosin heavy chain kinase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G006550.1Lsi01G006550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 86..115
score: 0
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 77..115
score: 0.16coord: 26..65
score:
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 83..124
score: 8
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 3..127
score: 7.8
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 1..124
score: 12
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 3..118
score: 6.11
NoneNo IPR availablePANTHERPTHR19923WD40 REPEAT PROTEINPRL1/PRL2-RELATEDcoord: 1..138
score: 1.0
NoneNo IPR availablePANTHERPTHR19923:SF0PLEIOTROPIC REGULATOR 1coord: 1..138
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G006550CSPI06G31260Wild cucumber (PI 183967)cpilsiB439
Lsi01G006550MELO3C007855Melon (DHL92) v3.5.1lsimeB156
Lsi01G006550MELO3C007855.2Melon (DHL92) v3.6.1lsimedB163
Lsi01G006550Bhi03G000696Wax gourdlsiwgoB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G006550Cucumber (Chinese Long) v3cuclsiB119
Lsi01G006550Cucumber (Chinese Long) v3cuclsiB187
Lsi01G006550Cucumber (Chinese Long) v3cuclsiB276
Lsi01G006550Cucumber (Chinese Long) v3cuclsiB462
Lsi01G006550Watermelon (97103) v2lsiwmbB115
Lsi01G006550Watermelon (97103) v2lsiwmbB144
Lsi01G006550Watermelon (97103) v2lsiwmbB147
Lsi01G006550Watermelon (97103) v2lsiwmbB149
Lsi01G006550Wax gourdlsiwgoB154
Lsi01G006550Wax gourdlsiwgoB200
Lsi01G006550Bottle gourd (USVL1VR-Ls)lsilsiB032
Lsi01G006550Bottle gourd (USVL1VR-Ls)lsilsiB078
Lsi01G006550Bottle gourd (USVL1VR-Ls)lsilsiB082
Lsi01G006550Bottle gourd (USVL1VR-Ls)lsilsiB085
Lsi01G006550Cucumber (Gy14) v1cgylsiB022
Lsi01G006550Cucumber (Gy14) v1cgylsiB375
Lsi01G006550Cucumber (Gy14) v1cgylsiB547
Lsi01G006550Cucurbita maxima (Rimu)cmalsiB013
Lsi01G006550Cucurbita maxima (Rimu)cmalsiB305
Lsi01G006550Cucurbita maxima (Rimu)cmalsiB407
Lsi01G006550Cucurbita maxima (Rimu)cmalsiB597
Lsi01G006550Cucurbita maxima (Rimu)cmalsiB786
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB001
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB152
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB292
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB393
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB582
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB632
Lsi01G006550Cucurbita moschata (Rifu)cmolsiB774
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB166
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB237
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB439
Lsi01G006550Cucurbita pepo (Zucchini)cpelsiB665
Lsi01G006550Wild cucumber (PI 183967)cpilsiB107
Lsi01G006550Wild cucumber (PI 183967)cpilsiB170
Lsi01G006550Wild cucumber (PI 183967)cpilsiB252
Lsi01G006550Cucumber (Chinese Long) v2culsiB109
Lsi01G006550Cucumber (Chinese Long) v2culsiB171
Lsi01G006550Cucumber (Chinese Long) v2culsiB253
Lsi01G006550Cucumber (Chinese Long) v2culsiB434
Lsi01G006550Melon (DHL92) v3.5.1lsimeB132
Lsi01G006550Melon (DHL92) v3.5.1lsimeB142
Lsi01G006550Melon (DHL92) v3.5.1lsimeB148
Lsi01G006550Watermelon (Charleston Gray)lsiwcgB127
Lsi01G006550Watermelon (Charleston Gray)lsiwcgB146
Lsi01G006550Watermelon (Charleston Gray)lsiwcgB150
Lsi01G006550Watermelon (Charleston Gray)lsiwcgB151
Lsi01G006550Watermelon (97103) v1lsiwmB132
Lsi01G006550Watermelon (97103) v1lsiwmB139
Lsi01G006550Watermelon (97103) v1lsiwmB140
Lsi01G006550Watermelon (97103) v1lsiwmB144
Lsi01G006550Watermelon (97103) v1lsiwmB168
Lsi01G006550Cucumber (Gy14) v2cgyblsiB098
Lsi01G006550Cucumber (Gy14) v2cgyblsiB155
Lsi01G006550Cucumber (Gy14) v2cgyblsiB240
Lsi01G006550Cucumber (Gy14) v2cgyblsiB398
Lsi01G006550Melon (DHL92) v3.6.1lsimedB140
Lsi01G006550Melon (DHL92) v3.6.1lsimedB148
Lsi01G006550Melon (DHL92) v3.6.1lsimedB155
Lsi01G006550Silver-seed gourdcarlsiB364
Lsi01G006550Silver-seed gourdcarlsiB693
Lsi01G006550Silver-seed gourdcarlsiB862
Lsi01G006550Silver-seed gourdcarlsiB892
Lsi01G006550Silver-seed gourdcarlsiB930