Lsi01G005910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G005910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Rhodanese/Cell cycle control phosphatase superfamily protein
Location	chr01 : 4712293 .. 4715406 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTTCATTATCAACAAATTAAAAAAAGAAAATCCCCTTCATCATTTTCCACTGCCAATGAAACAGGCCAATATCATCATTCTTCAATTGAGGAAATGGAGTCACCTCCAACCCAACCCCACTCCCACTTATTTTTCCGGCAGGTGTGGCAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCGTTATAAAAAGAAATTTCCACACTCTTCTTCGCTGTCAAATTTCACCGCCTGTTTCCGCCGCCGTTGTTCTTCCGCCCACTTTTCCCAGACGGTCTCTGATTTTTCCGACTTCAAAAACCGCCCACAGATTTCGAACCACAGGAATTCCGCCGCCAATCATGGGCTCCCTCGATAGGTCTCTCGTCTCTTTATATTTTATTTATACGCTTTTTCCTCTTTTCCTTTCCTTATCATTTCGATATTCTCTCCAATGAATGCTAATTCGATTCTCCTTCTTCCGTTTAAATTTCTGCTCTGTTTTTTCGTTTTCGGTAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACAGCCAAGAATCTGCTCCATTCCGGCTATGCATTTCTCGATGTCAGGTTGATTTTCCGTTAATTTTCTGCTTCGTATTTTGGTTGATTTTGTTAAGATTATTGGTGTGGATTTTTGGTAGGACTGTTGAGGAGTTCAAGGAAGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATTTGTTTAATTCTCCAAATGGTTAATTATTTTTAATAATCGTTTCCATATTCCTTTCTTGTTCCTTTCGAATTTTCCGGTAAAGTGACTGAAAGCCGCGGCGGTGGAATGTTCAGGTAGGGTAAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGACCCCCTCGTCGTGGTAACTTTTTTTTTTTAATCTTTTTCAATTTTTTTAAGTACATATTTTCACTAAATATTAGTTAAATTACAACTTAAATCCTTGAAAAAATTCCATCGGTTGTCTATGTTAAAACCAAATGATTCATTAAAAATAAATAGGCAATTATTAGGTGTACTCTCCAAAAAAAAAATTTTAAAAATCATTTTTTTTAAAATGTCTCGGAGCTGCCGTGGAATGCCTAAGTACTTTTCAAAATAAAATATATTTTTTTCAGGTACTTCCAACAAAAAGTGGAGCCCATTGATATGAAGTTAATAAGTAGTAGGATCAGTGATTAAAAAATCGGCGAAATAAGGGTATATTAGCAAATCCAAAAGTTTAGAGATTTAATATAAATTTTTTAATGCTCTGAGGTCAAATTTATACCAACATAAATGGCTCAAGGCCAAATTTTAAAATTTGTGGAAGAGGTATATATATAAACAGTGTTTAATAGGTCTACAGATATAATTTTTTTTTATTTTGAAGTTTAAAAGTGTCTAAAAGAGTTCTAGAATTTTAATAGTTTTAAAAAAAAAAAAATTAATTGATTTATAAGATGTAAATTTTTAATTTTGTGTCTAGTGAATACTCACTAGATACATAATTGAAGGATGTAAGGATTTATTCGTCACAAAATTAAAAGTTTAAAGGCTTATTAAATACATTTTTAAAATCTAGAGATCTATTAGAAACCAAATTGAAAATTCGTGATGAAAGTATCGTTAATTGTTTCAATTGTTCCAAATAATAATTTTTTCAGTTAAAATAAAATTTAAAAATTAACATGATAATTGATATATAAAAATTAGATATTGTACATAATATTATATACAATTATATAGAATAATAAGATTATTGTTATCATTTAAATATATTGTTAAAGCATTTACATAATAATTATTTTAGGAAAACATATGTAATTTACATATACGTTATTGTAAGTGAATTTTTTAAAAGACAACTTTCAAAGTTTCGGGGTAAAAGAAAATCCAAAGTCCATGGATATAAGTAAAATCTATCCTAGTTTTATGAATATTTTTGTATAATTTAAACTATATTTTTTTAAAACAGGGCTGCCGAAGTGGTGTCAGATCTCTGCTCGCCATTGATGACCTCCAAAATGATGTAAGTTAAATTATATTGGTATGGATTTTATTTCATTTTAATTGAATATTAATATTTAGGGTTGTTTTCAAATATAGTAAAATGAGCTAAAATATTTATAAATATAGCAAAATGTCAATGTCGATTACTTATAAATATTTTTAGCCTACTATCATATATCACGTCTATTAGTAATAGATAATGATATATTTTACTATATTTATAAATATTTCCAGCAGTTTTGTCATTTAAAACAATTACCCTAATATTTAATATATTTACTTTTAATAAATGTTAAGTTTAGTTAGCCTTAATAATAATAATAATAATAATCTAGTTTTCAACAAATATGTTTCAACATCTATAAATGTCCCCTGTAAAATAATTCATGTGTAAATCTTAGGCTTGAATAAGTGGTACCATAAATTTTGTTGATAAGACTTTATAATTCAGTCAAAATAATATAAAAAAATAAATGTAAAGAATAAGGCTTGAACCTAGGTTAGATTATAAATTTGGTCTCTATCTTTTGAAAAAAAAAATATTAGAATTTAGTTTTTATATTTGCTCAAATCCTCCAAAATAATCCTTATACTAAATTCTAACTTTTTTTTTTTTTCAAATAATGGATACTAAATTTGTAATGTTACTAATAAATTTATATCACAAAAATTGAGACAACAGGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGGCATTTGGCATGGTTGGAGAATGGATTTCCAGTAGCTAAGCCAAAAGGGGATCGAGAAGTAGTTGAGGATCATAAGATTGATGAGCTTTGATCGAGGTGAAATTATTTGAGAGACAGTTACAGTGTGATTGTTAGTTTACATTGTTTGATATATAAAAGAGAAATTACGAGAGAATTTGAATTTGTATCGATGCATACAAATTTCTAAATTTATATCAAACGATTATTAAGAGACGATCATATTGTAGCATTTTTATTAAATAATTTTTTTCTATAATGTGAATGTTTGGTTGTAAAGTTTAAGAATAATAAGACATTTCAGTTTGACAAAAATTGTTGATTAATATAACA

mRNA sequence

AAAAAATTTCATTATCAACAAATTAAAAAAAGAAAATCCCCTTCATCATTTTCCACTGCCAATGAAACAGGCCAATATCATCATTCTTCAATTGAGGAAATGGAGTCACCTCCAACCCAACCCCACTCCCACTTATTTTTCCGGCAGGTGTGGCAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCGTTATAAAAAGAAATTTCCACACTCTTCTTCGCTGTCAAATTTCACCGCCTGTTTCCGCCGCCGTTGTTCTTCCGCCCACTTTTCCCAGACGGTCTCTGATTTTTCCGACTTCAAAAACCGCCCACAGATTTCGAACCACAGGAATTCCGCCGCCAATCATGGGCTCCCTCGATAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACAGCCAAGAATCTGCTCCATTCCGGCTATGCATTTCTCGATGTCAGGACTGTTGAGGAGTTCAAGGAAGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATTTGTTTAATTCTCCAAATGGTTAATTATTTTTAATAATCGTTTCCATATTCCTTTCTTGTTCCTTTCGAATTTTCCGGTAAAGTGACTGAAAGCCGCGGCGGTGGAATGTTCAGGTAGGGTAAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGACCCCCTCGTCGTGGGCTGCCGAAGTGGTGTCAGATCTCTGCTCGCCATTGATGACCTCCAAAATGATGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGGCATTTGGCATGGTTGGAGAATGGATTTCCAGTAGCTAAGCCAAAAGGGGATCGAGAAGTAGTTGAGGATCATAAGATTGATGAGCTTTGATCGAGGTGAAATTATTTGAGAGACAGTTACAGTGTGATTGTTAGTTTACATTGTTTGATATATAAAAGAGAAATTACGAGAGAATTTGAATTTGTATCGATGCATACAAATTTCTAAATTTATATCAAACGATTATTAAGAGACGATCATATTGTAGCATTTTTATTAAATAATTTTTTTCTATAATGTGAATGTTTGGTTGTAAAGTTTAAGAATAATAAGACATTTCAGTTTGACAAAAATTGTTGATTAATATAACA

Coding sequence (CDS)

ATGAAACAGGCCAATATCATCATTCTTCAATTGAGGAAATGGAGTCACCTCCAACCCAACCCCACTCCCACTTATTTTTCCGGCAGGTGTGGCAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCGTTATAAAAAGAAATTTCCACACTCTTCTTCGCTGTCAAATTTCACCGCCTGTTTCCGCCGCCGTTGTTCTTCCGCCCACTTTTCCCAGACGGTCTCTGATTTTTCCGACTTCAAAAACCGCCCACAGATTTCGAACCACAGGAATTCCGCCGCCAATCATGGGCTCCCTCGATAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACAGCCAAGAATCTGCTCCATTCCGGCTATGCATTTCTCGATGTCAGGACTGTTGAGGAGTTCAAGGAAGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATTTGTTTAATTCTCCAAATGGTTAA

Protein sequence

MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLDSSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG

Homology

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BLAST of Lsi01G005910 vs. Swiss-Prot
Match: STR17_ARATH (Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 107 SDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           S+  ++T+DV  A+ LL SGY FLDVRTVEEFK+GHV +E + N+PY   +P G
Sbjct: 28  SEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQG 81

[Close]

BLAST of Lsi01G005910 vs. Swiss-Prot
Match: STR18_ARATH (Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 111 IVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           +V+VDV  AK LL SG+ +LDVRT +EF+ GH    KIVNIPY+ N+P G
Sbjct: 14  VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQG 63

[Close]

BLAST of Lsi01G005910 vs. Swiss-Prot
Match: STR19_ARATH (Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 111 IVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           + TVDV TAK  L +G+ +LDVRT EEF + HV  E+ +NIPY+F +  G
Sbjct: 41  VETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHV--EEALNIPYMFKTDEG 88

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BLAST of Lsi01G005910 vs. TrEMBL
Match: A0A0A0KJE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507040 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-61
Identity = 126/161 (78.26%), Postives = 135/161 (83.85%), Query Frame = 1


Query: 1   MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQ 60
           MKQAN IILQLRKWSHLQPNPTP++FSGRC KTTCRPT Q+RS+S L IKRNF+ LLR Q
Sbjct: 1   MKQANAIILQLRKWSHLQPNPTPSFFSGRCCKTTCRPTNQQRSESYLTIKRNFNVLLRHQ 60

Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLD-SSDAGIVTVDVKTA 120
             P VSAAV+LPP  P       T KTAH FRT GI PPIMGSLD SSD+GIVTVDVKTA
Sbjct: 61  NLPAVSAAVLLPPQSP-------TLKTAHGFRTAGIRPPIMGSLDSSSDSGIVTVDVKTA 120

Query: 121 KNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
            NLLHSGYAFLDVRTVEEFKEGH+ATE+IVNIPYL NSPNG
Sbjct: 121 DNLLHSGYAFLDVRTVEEFKEGHMATERIVNIPYLLNSPNG 154

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BLAST of Lsi01G005910 vs. TrEMBL
Match: A0A067LEI4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06570 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 101 MGSLD-SSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPN 160
           MGSLD SS++ ++T+DVK AK L  SGY +LDVRTVEEFK+GHV  EKI NIPY+FN+P 
Sbjct: 1   MGSLDRSSESEVITIDVKAAKGLHESGYIYLDVRTVEEFKKGHVRAEKIFNIPYMFNTPE 60

[Close]

BLAST of Lsi01G005910 vs. TrEMBL
Match: A0A061DFQ0_THECC (Rhodanese/Cell cycle control phosphatase superfamily protein OS=Theobroma cacao GN=TCM_000187 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-14
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 100 IMGSLD-SSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSP 159
           +MGSLD SS + +VT+DV  AK+LL SGY ++DVRTVEE+K+GHV  EKI+NIPY+FN+P
Sbjct: 68  VMGSLDKSSGSEVVTIDVIQAKSLLQSGYGYIDVRTVEEYKKGHVDAEKILNIPYMFNTP 127

Query: 160 NG 161
            G
Sbjct: 128 EG 129

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BLAST of Lsi01G005910 vs. TrEMBL
Match: U5GBF2_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s11330g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.4e-14
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 101 MGSLD-SSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPN 160
           MGSLD S+ A +VTVDVK  K LL SGY +LDVRTVEE+ +GHV  EKI NIPYLFN+P 
Sbjct: 76  MGSLDKSTGAEVVTVDVKATKGLLESGYTYLDVRTVEEYNKGHVDGEKIFNIPYLFNTPE 135

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BLAST of Lsi01G005910 vs. TrEMBL
Match: A0A067FVA3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031752mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 106 SSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           SS A ++TVDV+ AKNLL SGY +LDVRT EEFKEGHV   KI NIPY+FN+P G
Sbjct: 23  SSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG 77

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BLAST of Lsi01G005910 vs. TAIR10
Match: AT2G17850.1 (AT2G17850.1 Rhodanese/Cell cycle control phosphatase superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 107 SDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           S+  ++T+DV  A+ LL SGY FLDVRTVEEFK+GHV +E + N+PY   +P G
Sbjct: 28  SEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQG 81

[Close]

BLAST of Lsi01G005910 vs. TAIR10
Match: AT5G66170.2 (AT5G66170.2 sulfurtransferase 18)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 111 IVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           +V+VDV  AK LL SG+ +LDVRT +EF+ GH    KIVNIPY+ N+P G
Sbjct: 14  VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQG 63

[Close]

BLAST of Lsi01G005910 vs. TAIR10
Match: AT2G21045.1 (AT2G21045.1 Rhodanese/Cell cycle control phosphatase superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 111 IVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           + TVDV TAK  L +G+ +LDVRT EEF + HV  E+ +NIPY+F +  G
Sbjct: 41  VETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHV--EEALNIPYMFKTDEG 88

[Close]

BLAST of Lsi01G005910 vs. TAIR10
Match: AT4G35770.1 (AT4G35770.1 Rhodanese/Cell cycle control phosphatase superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 30/101 (29.70%), Postives = 46/101 (45.54%), Query Frame = 1


Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLDSSDAGIVT-VDVKTA 120
           ISPP+          P R  +         FR         G++ +    I T V V+ A
Sbjct: 19  ISPPLQTCGSFKCQLPTRRGVIVADLRNSNFRWRKATTTSRGNVAAEAVKIPTSVPVRVA 78

Query: 121 KNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           + L  +GY +LDVRT +EF  GH    + +N+PY++   +G
Sbjct: 79  RELAQAGYRYLDVRTPDEFSIGH--PTRAINVPYMYRVGSG 117

[Close]

BLAST of Lsi01G005910 vs. NCBI nr
Match: gi|659080516|ref|XP_008440833.1| (PREDICTED: thiosulfate sulfurtransferase 18 isoform X1 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.7e-63
Identity = 129/160 (80.62%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 1   MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQ 60
           MKQAN IIL+LRKWSHLQ NPTPT+FSGRC KTTCRPT QERS+SNL IK NFH LLR Q
Sbjct: 1   MKQANPIILRLRKWSHLQHNPTPTFFSGRCCKTTCRPTNQERSESNLTIKGNFHVLLRHQ 60

Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLDSSDAGIVTVDVKTAK 120
             P VSAAVVLPP  P       T KTAH FRT GI PPIMGSLDSSD+GIVTVDVKTA 
Sbjct: 61  NLPAVSAAVVLPPQSP-------TLKTAHGFRTAGIRPPIMGSLDSSDSGIVTVDVKTAD 120

Query: 121 NLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           NLLHSGYAFLDVRTVEEFKEGHVATE+IVNIPYL NSPNG
Sbjct: 121 NLLHSGYAFLDVRTVEEFKEGHVATERIVNIPYLLNSPNG 153

[Close]

BLAST of Lsi01G005910 vs. NCBI nr
Match: gi|659080518|ref|XP_008440834.1| (PREDICTED: uncharacterized protein LOC103485140 isoform X2 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.7e-63
Identity = 129/160 (80.62%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 1   MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQ 60
           MKQAN IIL+LRKWSHLQ NPTPT+FSGRC KTTCRPT QERS+SNL IK NFH LLR Q
Sbjct: 1   MKQANPIILRLRKWSHLQHNPTPTFFSGRCCKTTCRPTNQERSESNLTIKGNFHVLLRHQ 60

Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLDSSDAGIVTVDVKTAK 120
             P VSAAVVLPP  P       T KTAH FRT GI PPIMGSLDSSD+GIVTVDVKTA 
Sbjct: 61  NLPAVSAAVVLPPQSP-------TLKTAHGFRTAGIRPPIMGSLDSSDSGIVTVDVKTAD 120

Query: 121 NLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           NLLHSGYAFLDVRTVEEFKEGHVATE+IVNIPYL NSPNG
Sbjct: 121 NLLHSGYAFLDVRTVEEFKEGHVATERIVNIPYLLNSPNG 153

[Close]

BLAST of Lsi01G005910 vs. NCBI nr
Match: gi|778719748|ref|XP_011658053.1| (PREDICTED: uncharacterized protein LOC101221593 isoform X2 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 8.2e-63
Identity = 126/160 (78.75%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 1   MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQ 60
           MKQAN IILQLRKWSHLQPNPTP++FSGRC KTTCRPT Q+RS+S L IKRNF+ LLR Q
Sbjct: 1   MKQANAIILQLRKWSHLQPNPTPSFFSGRCCKTTCRPTNQQRSESYLTIKRNFNVLLRHQ 60

Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLDSSDAGIVTVDVKTAK 120
             P VSAAV+LPP  P       T KTAH FRT GI PPIMGSLDSSD+GIVTVDVKTA 
Sbjct: 61  NLPAVSAAVLLPPQSP-------TLKTAHGFRTAGIRPPIMGSLDSSDSGIVTVDVKTAD 120

Query: 121 NLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
           NLLHSGYAFLDVRTVEEFKEGH+ATE+IVNIPYL NSPNG
Sbjct: 121 NLLHSGYAFLDVRTVEEFKEGHMATERIVNIPYLLNSPNG 153

[Close]

BLAST of Lsi01G005910 vs. NCBI nr
Match: gi|778719745|ref|XP_011658052.1| (PREDICTED: uncharacterized protein LOC101221593 isoform X1 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-61
Identity = 126/161 (78.26%), Postives = 135/161 (83.85%), Query Frame = 1


Query: 1   MKQANIIILQLRKWSHLQPNPTPTYFSGRCGKTTCRPTKQERSKSNLVIKRNFHTLLRCQ 60
           MKQAN IILQLRKWSHLQPNPTP++FSGRC KTTCRPT Q+RS+S L IKRNF+ LLR Q
Sbjct: 1   MKQANAIILQLRKWSHLQPNPTPSFFSGRCCKTTCRPTNQQRSESYLTIKRNFNVLLRHQ 60

Query: 61  ISPPVSAAVVLPPTFPRRSLIFPTSKTAHRFRTTGIPPPIMGSLD-SSDAGIVTVDVKTA 120
             P VSAAV+LPP  P       T KTAH FRT GI PPIMGSLD SSD+GIVTVDVKTA
Sbjct: 61  NLPAVSAAVLLPPQSP-------TLKTAHGFRTAGIRPPIMGSLDSSSDSGIVTVDVKTA 120

Query: 121 KNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 161
            NLLHSGYAFLDVRTVEEFKEGH+ATE+IVNIPYL NSPNG
Sbjct: 121 DNLLHSGYAFLDVRTVEEFKEGHMATERIVNIPYLLNSPNG 154

[Close]

BLAST of Lsi01G005910 vs. NCBI nr
Match: gi|694409502|ref|XP_009379384.1| (PREDICTED: thiosulfate sulfurtransferase 18-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 101 MGSLDSSDAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYLFNSPNG 160
           MGS+ SS++G+VTVDV+ AK+LL SGY FL+VRT EE+K+GHV T+KI+NIPY+FN+P G
Sbjct: 1   MGSIGSSESGVVTVDVQEAKHLLESGYGFLEVRTEEEYKKGHVDTKKILNIPYMFNTPKG 60

The following BLAST results are available for this feature:

BLAST of Lsi01G005910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STR17_ARATH	1.9e-11	55.56	Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=...	[more]
STR18_ARATH	2.1e-10	58.00	Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1	[more]
STR19_ARATH	1.9e-06	52.00	Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thalia...	[more]

BLAST of Lsi01G005910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJE7_CUCSA	1.4e-61	78.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507040 PE=4 SV=1	[more]
A0A067LEI4_JATCU	1.7e-14	67.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06570 PE=4 SV=1	[more]
A0A061DFQ0_THECC	3.8e-14	64.52	Rhodanese/Cell cycle control phosphatase superfamily protein OS=Theobroma cacao ...	[more]
U5GBF2_POPTR	8.4e-14	68.85	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s11330g P...	[more]
A0A067FVA3_CITSI	1.4e-13	69.09	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031752mg PE=4 SV=1	[more]

BLAST of Lsi01G005910 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17850.1	1.1e-12	55.56	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]
AT5G66170.2	1.2e-11	58.00	sulfurtransferase 18	[more]
AT2G21045.1	1.0e-07	52.00	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]
AT4G35770.1	9.8e-06	29.70	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]

BLAST of Lsi01G005910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080516\|ref\|XP_008440833.1\|	1.7e-63	80.63	PREDICTED: thiosulfate sulfurtransferase 18 isoform X1 [Cucumis melo]	[more]
gi\|659080518\|ref\|XP_008440834.1\|	1.7e-63	80.63	PREDICTED: uncharacterized protein LOC103485140 isoform X2 [Cucumis melo]	[more]
gi\|778719748\|ref\|XP_011658053.1\|	8.2e-63	78.75	PREDICTED: uncharacterized protein LOC101221593 isoform X2 [Cucumis sativus]	[more]
gi\|778719745\|ref\|XP_011658052.1\|	2.0e-61	78.26	PREDICTED: uncharacterized protein LOC101221593 isoform X1 [Cucumis sativus]	[more]
gi\|694409502\|ref\|XP_009379384.1\|	2.2e-15	66.67	PREDICTED: thiosulfate sulfurtransferase 18-like isoform X2 [Pyrus x bretschneid...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001763	Rhodanese-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G005910.1	Lsi01G005910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001763	Rhodanese-like domain	GENE3D	G3DSA:3.40.250.10		coord: 105..153 score: 6.
IPR001763	Rhodanese-like domain	unknown	SSF52821	Rhodanese/Cell cycle control phosphatase	coord: 103..145 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G005910	Bottle gourd (USVL1VR-Ls)	lsilsiB031
Lsi01G005910	Bottle gourd (USVL1VR-Ls)	lsilsiB078
Lsi01G005910	Bottle gourd (USVL1VR-Ls)	lsilsiB081
Lsi01G005910	Bottle gourd (USVL1VR-Ls)	lsilsiB085
Lsi01G005910	Cucumber (Gy14) v1	cgylsiB022
Lsi01G005910	Cucumber (Gy14) v1	cgylsiB527
Lsi01G005910	Cucumber (Gy14) v1	cgylsiB547
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB163
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB306
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB407
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB720
Lsi01G005910	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB152
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB293
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB393
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB710
Lsi01G005910	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G005910	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G005910	Cucurbita pepo (Zucchini)	cpelsiB165
Lsi01G005910	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G005910	Cucumber (Chinese Long) v2	culsiB165
Lsi01G005910	Wild cucumber (PI 183967)	cpilsiB164
Lsi01G005910	Wild cucumber (PI 183967)	cpilsiB108
Lsi01G005910	Wild cucumber (PI 183967)	cpilsiB170
Lsi01G005910	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G005910	Cucumber (Chinese Long) v2	culsiB110
Lsi01G005910	Cucumber (Chinese Long) v2	culsiB171
Lsi01G005910	Cucumber (Chinese Long) v2	culsiB434
Lsi01G005910	Melon (DHL92) v3.5.1	lsimeB146
Lsi01G005910	Melon (DHL92) v3.5.1	lsimeB124
Lsi01G005910	Melon (DHL92) v3.5.1	lsimeB142
Lsi01G005910	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G005910	Watermelon (Charleston Gray)	lsiwcgB120
Lsi01G005910	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G005910	Watermelon (Charleston Gray)	lsiwcgB151
Lsi01G005910	Watermelon (97103) v1	lsiwmB129
Lsi01G005910	Watermelon (97103) v1	lsiwmB132
Lsi01G005910	Watermelon (97103) v1	lsiwmB144
Lsi01G005910	Cucumber (Gy14) v2	cgyblsiB100
Lsi01G005910	Cucumber (Gy14) v2	cgyblsiB150
Lsi01G005910	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G005910	Melon (DHL92) v3.6.1	lsimedB131
Lsi01G005910	Melon (DHL92) v3.6.1	lsimedB148
Lsi01G005910	Melon (DHL92) v3.6.1	lsimedB152
Lsi01G005910	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G005910	Silver-seed gourd	carlsiB125
Lsi01G005910	Silver-seed gourd	carlsiB364
Lsi01G005910	Silver-seed gourd	carlsiB585
Lsi01G005910	Silver-seed gourd	carlsiB892
Lsi01G005910	Cucumber (Chinese Long) v3	cuclsiB121
Lsi01G005910	Cucumber (Chinese Long) v3	cuclsiB181
Lsi01G005910	Cucumber (Chinese Long) v3	cuclsiB187
Lsi01G005910	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G005910	Watermelon (97103) v2	lsiwmbB128
Lsi01G005910	Watermelon (97103) v2	lsiwmbB115
Lsi01G005910	Watermelon (97103) v2	lsiwmbB118
Lsi01G005910	Watermelon (97103) v2	lsiwmbB149
Lsi01G005910	Wax gourd	lsiwgoB163
Lsi01G005910	Wax gourd	lsiwgoB168