Lsi01G004780 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004780
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 3981769 .. 3982871 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTAAAGGTAGACAAAATTAATGTCCTTTCAAAAATGTCAGCTAAATGAGGTGGCAAAATTACTAAAGATTCTTTGGACTCCTCATGCTTCCCCTCCTCTTTTCCCCAACCTCATTATATTTTATTTCAATCCATCATTTTTCATACACCTATATAAACCCTCCCCTGCTGCTTCTTATAATCAACTTGTGCTCGCTCACATTTTAGTTTTCCTCACAACTCATCTGAGTTTATCTTTTTAACTCTTTTCTTCACTTTCTTTGCTTTCTCTTCCCTTTCCCAAATGGCCACCATTGAGGTAATTCAAGTTTATATAGCTTTTGCTCATGGCTTTGGGTTAAGTTTTTTAGTATTTGGTTCAGTTCAGATCAAACCTCTTTCAAATCTTCTTCTTTTTTTGTTTTTCTGTTGACATTCTTACTCTTTATTTCTCTCTATGTAAGTGTGATCAAGTTCCAATTGATCTTGCAATGTGGGATTTTTCTCATCAATGCATTGAAATGATCTATATATTGGATCGTATATATTCTACTAGCAAAAGAAAGAACAAACTAATGGCCTTTTCTCATATGAAAATGATCATATAAAACTGTTTAAAACAATGTTTTCCTTAAATCATTGCTAAAAAGCAAGTTCCAATTTGATAATCAATTGTGTGATCTGGGTTTTGCAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

mRNA sequence

AAGTAAAGGTAGACAAAATTAATGTCCTTTCAAAAATGTCAGCTAAATGAGGTGGCAAAATTACTAAAGATTCTTTGGACTCCTCATGCTTCCCCTCCTCTTTTCCCCAACCTCATTATATTTTATTTCAATCCATCATTTTTCATACACCTATATAAACCCTCCCCTGCTGCTTCTTATAATCAACTTGTGCTCGCTCACATTTTAGTTTTCCTCACAACTCATCTGAGTTTATCTTTTTAACTCTTTTCTTCACTTTCTTTGCTTTCTCTTCCCTTTCCCAAATGGCCACCATTGAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

Coding sequence (CDS)

ATGGCCACCATTGAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

Protein sequence

MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAEAPAEEPKEEAAPEPVEAEEPAPVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVEEKKEEEAKEETVEPVVEKTEEPQEAKSEDAVEESSEAAAPAEEEKPKAEE
Homology
[Close]
BLAST of Lsi01G004780 vs. TrEMBL
Match: A0A0A0KMX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511710 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-33
Identity = 119/154 (77.27%), Postives = 126/154 (81.82%), Query Frame = 1 

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAE-APAEEPKEEAA----PEPVEAEEP 60
           MAT+EVES PVVLPEPEAAP VQ EEKVVEEPVAE  PA+E +EEAA    PEPVE    
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPVEE--- 60

Query: 61  APVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVE 120
           APVATEP VETKEEVV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V E
Sbjct: 61  APVATEPEVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEE 120

Query: 121 KTEEP-QEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           KTEE  +E KSEDAVEESSEAAAPAEEEKPKAEE
Sbjct: 121 KTEEETKEVKSEDAVEESSEAAAPAEEEKPKAEE 148

[Close]
BLAST of Lsi01G004780 vs. NCBI nr
Match: gi|659079095|ref|XP_008440071.1| (PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.7e-33
Identity = 117/150 (78.00%), Postives = 125/150 (83.33%), Query Frame = 1 

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEEAAPEPV-EAEEPAPV 60
           MATIEVESAPVVLPEPEAAP VQ EEKVVEEPVA E PA+E KEEAAPEPV E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVEKTE 120
            TEPVVETKEEVV ++E+KPEEAEPAA   EPEAP E E E+KEEE KEE VE   E  E
Sbjct: 61  ETEPVVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEEKEEETKEEAVEEKAE--E 120

Query: 121 EPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           E +E KSE+ VEESSEAAAPAEEEKPKAEE
Sbjct: 121 EAKEVKSEEVVEESSEAAAPAEEEKPKAEE 145

[Close]
BLAST of Lsi01G004780 vs. NCBI nr
Match: gi|449434024|ref|XP_004134796.1| (PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 119/154 (77.27%), Postives = 126/154 (81.82%), Query Frame = 1 

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAE-APAEEPKEEAA----PEPVEAEEP 60
           MAT+EVES PVVLPEPEAAP VQ EEKVVEEPVAE  PA+E +EEAA    PEPVE    
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPVEE--- 60

Query: 61  APVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVE 120
           APVATEP VETKEEVV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V E
Sbjct: 61  APVATEPEVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEE 120

Query: 121 KTEEP-QEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           KTEE  +E KSEDAVEESSEAAAPAEEEKPKAEE
Sbjct: 121 KTEEETKEVKSEDAVEESSEAAAPAEEEKPKAEE 148

The following BLAST results are available for this feature:
BLAST of Lsi01G004780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMX7_CUCSA9.7e-3377.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511710 PE=4 SV=1[more]
BLAST of Lsi01G004780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G004780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079095|ref|XP_008440071.1|3.7e-3378.00PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo][more]
gi|449434024|ref|XP_004134796.1|1.4e-3277.27PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004780.1Lsi01G004780.1mRNA